mRNA_L-elsbetiae_contig19847.5933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19847.5933.1
Unique NamemRNA_L-elsbetiae_contig19847.5933.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.090e-33
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRHVHP 198
            +RV+FYSLAGKLVGRLEAY HALGV+S+AWSPDGTLLSVGSYDQC RLVSPVTWKAVAVLRHVHP
Sbjct:  207 YRVMFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHP 271          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.730e-31
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRHVHP 198
            +RV+FYSLAGKLVGRLEAY  ALGV+S+AWSP GTLLSVGSYDQC RLVSPVTWKAVAVLRHVHP
Sbjct:  215 YRVMFYSLAGKLVGRLEAYSRALGVKSMAWSPAGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHP 279          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: W4FZL7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZL7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.160e-16
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +RVLFYS+ G L+ + EAY+HALG++S+AWSP G  L++GS+D+ VRL+S + WK +A L H
Sbjct:  235 YRVLFYSIEGDLLHQYEAYQHALGIKSMAWSPSGQFLALGSFDEKVRLMSHMHWKCIAELDH 296          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A024TM13_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TM13_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.240e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +RVLFYS+ G L+ + EAY+HALG++S+ WSP G  L+VGS+D+ +RL+S + WK +A L H
Sbjct:  231 YRVLFYSIDGDLLHQFEAYQHALGIKSMVWSPSGQFLAVGSFDEKIRLLSHMHWKCIAELDH 292          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A485K5F4_9STRA (Aste57867_1501 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5F4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.050e-15
Identity = 34/62 (54.84%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +R+LFYS+ G L+ + EAY++ALGV++++WSP G  L+VGSYD+ VRLVS + WK++A L H
Sbjct:  196 YRLLFYSVDGVLLHQFEAYQNALGVKTMSWSPSGQFLAVGSYDEKVRLVSHMHWKSIAELDH 257          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A1V9Y9N4_9STRA (WD repeat-containing protein 8-like (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9N4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.740e-15
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +RVLFY+  G L+   EAYEHALG++S++WSP G  +++GSYD+ VRL+S + WK VA L H
Sbjct: 1160 YRVLFYAPDGTLLQSYEAYEHALGIKSMSWSPSGQFVAIGSYDERVRLLSNLHWKPVAELEH 1221          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A8B6BS87_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BS87_MYTGA)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-14
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRHVHP 198
            +++L YS+ G+ V +  AYE+ALGV+S+AWSP    L++GSYD+ VR+++ +TWK VA   H HP
Sbjct:    4 YKILVYSVDGRCVSKYSAYENALGVKSIAWSPTSQFLAIGSYDEKVRILNHITWKTVA--EHSHP 66          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: UPI000359A7DC (WD repeat-containing protein WRAP73 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359A7DC)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-14
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    4 FRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +RVL YSL G+ + R  AY+ ALGV++LAWSP    L++GSYD+ +RL++ VTWK +A L H
Sbjct:  202 YRVLLYSLDGRCLARYSAYDLALGVKTLAWSPSSQFLAIGSYDEKLRLLNHVTWKTIATLPH 263          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A6P8P278_GEOSA (WD repeat-containing protein WRAP73 isoform X4 n=8 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8P278_GEOSA)

HSP 1 Score: 74.7 bits (182), Expect = 3.870e-14
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 RFRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRHV 192
            +F+VL YSL G+L+    AYE +LG++S+ WSP    L++GSYD+ VR+++ VTWK +A L H+
Sbjct:  202 QFKVLLYSLDGRLLSTYSAYEWSLGIKSITWSPSSQFLAIGSYDEKVRILNHVTWKPIAELEHL 265          
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Match: A0A1S3II40_LINUN (WD repeat-containing protein WRAP73-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3II40_LINUN)

HSP 1 Score: 74.7 bits (182), Expect = 3.930e-14
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 RFRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLVSPVTWKAVAVLRH 189
            +++VL YS+ G+ +    AYEHALGV+++AW+P    L++GSYDQ VR+++ +TW+AVA   H
Sbjct:  201 QYKVLLYSVDGRCLSEYSAYEHALGVKNIAWAPSSQFLAIGSYDQKVRILNHITWRAVAEFDH 263          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19847.5933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM7_ECTSI1.090e-3390.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUS3_9PHAE5.730e-3187.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4FZL7_9STRA6.160e-1654.84Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TM13_9STRA1.240e-1553.23Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485K5F4_9STRA4.050e-1554.84Aste57867_1501 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9Y9N4_9STRA4.740e-1554.84WD repeat-containing protein 8-like (Fragment) n=1... [more]
A0A8B6BS87_MYTGA1.200e-1449.23Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
UPI000359A7DC2.190e-1453.23WD repeat-containing protein WRAP73 n=1 Tax=Aplysi... [more]
A0A6P8P278_GEOSA3.870e-1448.44WD repeat-containing protein WRAP73 isoform X4 n=8... [more]
A0A1S3II40_LINUN3.930e-1447.62WD repeat-containing protein WRAP73-like n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19847contigL-elsbetiae_contig19847:380..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue8e-28
Seed eggNOG ortholog2880.D8LDM7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of non-motile cilium assembly
EggNOG OGsKOG4497@1,KOG4497@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-19_001240.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.2790394-CDS-L-elsbetiae_contig19847:379..5771622815821.2790394-CDS-L-elsbetiae_contig19847:379..577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19847 380..577 +
1691683124.7702851-CDS-L-elsbetiae_contig19847:379..5771691683124.7702851-CDS-L-elsbetiae_contig19847:379..577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19847 380..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19847.5933.1prot_L-elsbetiae_contig19847.5933.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19847 380..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19847.5933.1

>prot_L-elsbetiae_contig19847.5933.1 ID=prot_L-elsbetiae_contig19847.5933.1|Name=mRNA_L-elsbetiae_contig19847.5933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
RFRVLFYSLAGKLVGRLEAYEHALGVRSLAWSPDGTLLSVGSYDQCVRLV
SPVTWKAVAVLRHVHP
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mRNA from alignment at L-elsbetiae_contig19847:380..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19847.5933.1 ID=mRNA_L-elsbetiae_contig19847.5933.1|Name=mRNA_L-elsbetiae_contig19847.5933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig19847:380..577+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTTCGTGTTTTGTTCTACTCGCTGGCGGGGAAGTTGGTGGGGCGTTT GGAGGCGTACGAGCACGCGCTGGGCGTGCGGTCTCTGGCTTGGTCCCCAG ACGGCACCCTGCTGTCGGTGGGCAGCTACGACCAGTGCGTGAGGCTGGTG TCTCCGGTGACGTGGAAGGCCGTGGCGGTTCTTCGGCACGTGCACCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19847:380..577+

>mRNA_L-elsbetiae_contig19847.5933.1 ID=mRNA_L-elsbetiae_contig19847.5933.1|Name=mRNA_L-elsbetiae_contig19847.5933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig19847:380..577+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTTCGTGTTTTGTTCTACTCGCTGGCGGGGAAGTTGGTGGGGCGTTT
GGAGGCGTACGAGCACGCGCTGGGCGTGCGGTCTCTGGCTTGGTCCCCAG
ACGGCACCCTGCTGTCGGTGGGCAGCTACGACCAGTGCGTGAGGCTGGTG
TCTCCGGTGACGTGGAAGGCCGTGGCGGTTCTTCGGCACGTGCACCCTAG
GTTTCGTGTTTTGTTCTACTCGCTGGCGGGGAAGTTGGTGGGGCGTTTGG
AGGCGTACGAGCACGCGCTGGGCGTGCGGTCTCTGGCTTGGTCCCCAGAC
GGCACCCTGCTGTCGGTGGGCAGCTACGACCAGTGCGTGAGGCTGGTGTC
TCCGGTGACGTGGAAGGCCGTGGCGGTTCTTCGGCACGTGCACCCT
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