Homology
BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Match:
D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI)
HSP 1 Score: 160 bits (406), Expect = 2.330e-43
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 1
Query: 1 KTRQGRRDGIVERAISEADDLVVCVLDAGGGEEDGREADDGSAQPPPLLRGFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGGCELVLARRVGPAEVVKQLHLLPL 369
K++ RDGIVERAISEA+DLVVCVL GG E+D RE + SA+PPPLLR FDDDWEA R R EY E E E+APLATE +T+LPVSGNSTVLDR+G C++VLARRVGP EVVK+LHLLP+
Sbjct: 106 KSKTEPRDGIVERAISEAEDLVVCVLHPGG-EQDDRETES-SARPPPLLRSFDDDWEAIRTRREYVPEPLEPESAPLATEPFSTSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPI 226
BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Match:
A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE)
HSP 1 Score: 119 bits (297), Expect = 1.410e-28
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1
Query: 115 DDGSAQPPPLLRGFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGGCELVLARRVGPAEVVKQLHLLPL 369
DD SAQPPPLLR FDDDWEA R R EY E E E APLATE +T+ PVS NSTVLDR+G C++VLARRVGP EVVK+LHL P+
Sbjct: 73 DDSSAQPPPLLRSFDDDWEAIRTRREYVPEPLEPEGAPLATEPYSTSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPI 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.33e-43 / Id = 69.92 Expect = 1.41e-28 / Id = 70.59 Sequence D7FV98_ECTSI A0A6H5LGE7_9PHAE
Match Name E-value Identity Description
D7FV98_ECTSI 2.330e-43 69.92 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGE7_9PHAE 1.410e-28 70.59 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 2
Model size 383
Cds size 381
Stop 1
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815820.8518229-CDS-L-elsbetiae_contig1982:12934..13056 1622815820.8518229-CDS-L-elsbetiae_contig1982:12934..13056 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1982 12935..13056 +
1691683124.5263448-CDS-L-elsbetiae_contig1982:12934..13056 1691683124.5263448-CDS-L-elsbetiae_contig1982:12934..13056 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1982 12935..13056 +
1622815820.8612027-CDS-L-elsbetiae_contig1982:13661..13920 1622815820.8612027-CDS-L-elsbetiae_contig1982:13661..13920 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1982 13662..13920 +
1691683124.5395987-CDS-L-elsbetiae_contig1982:13661..13920 1691683124.5395987-CDS-L-elsbetiae_contig1982:13661..13920 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1982 13662..13920 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1982.5926.1
>prot_L-elsbetiae_contig1982.5926.1 ID=prot_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
KTRQGRRDGIVERAISEADDLVVCVLDAGGGEEDGREADDGSAQPPPLLR GFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGG CELVLARRVGPAEVVKQLHLLPLLRR* back to top mRNA from alignment at L-elsbetiae_contig1982:12935..13920+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1982.5926.1 ID=mRNA_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=986bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:12935..13920+ (Laminarionema elsbetiae ELsaHSoW15)AAGACCAGGCAGGGGCGGCGGGATGGCATCGTCGAGAGAGCGATCTCGGA
GGCGGACGACCTGGTGGTGTGCGTGCTTGACGCCGGGGGGGGAGAGGAAG
ACGGCCGGGAGGCAGACGATGG GTGAGCCTTCCGTTGCATGCACACAAGA
CGCAAGCGCAAAGAAAGACAGACCCCTCAGTTTTTTGTTTTGACATAAAA
ATGCATGTACATAGACTACATATAACACCTTGTTTTGTTGGGTTTCAATC
CGCATCTTCGCGTGTGCGTGGCTGCTGTTTGTCGCGCCGGGGTTTATTAA
TGGTTGAGTGCACTACATACTACCAGCGTATACTACCTAACTTGAACCCG
ACTCGTACAACAGGCCATACCGTCCCCGTTGCGCGGTGTCATCGTACTAA
ATCACTGTAACTAGGATACATATCGAGTATTTTACACCCGAAACCGGCCT
TTCGCGCTGGAGATCGTGTAATGCCCGCGTGTTTTTCGAAGGTCGTTTGT
TCTTTGATGTTTGATGGCATGCTTTTGTTTTCTCTCGCTGAAGATGCATC
CTTTTGGACGCTCTTCAAGATTTGCTGCGAGCAGCAGCAATGGCGGCATA
TGTATTCGCCTACGGTGTATCAGCATATGGGGCTGGCACTGGTCAACGCG
CTGTGTGCTAGTAGGTAGGACGTGAAGGTCGCACCAACGACTCGTGGACG
CTGCCGCTTCTTCGTGCTCGACCGCAGCTCCGCCCAGCCGCCCCCTCTTC
TGCGCGGTTTCGACGATGACTGGGAGGCGTTCCGCGCTCGGGGAGAGTAT
TCGACGGAGCATTCGGAGCTCGAGACTGCCCCGCTGGCGACAGAGTCAGC
TGCCACAGCGTTACCGGTCAGCGGGAATTCCACCGTTTTGGACCGCGTCG
GTGGTTGCGAACTTGTGCTTGCGCGGCGGGTTGGGCCAGCGGAGGTGGTG
AAGCAGCTTCATCTATTGCCATTGCTCCGGAGGTGA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1982:12935..13920+
>mRNA_L-elsbetiae_contig1982.5926.1 ID=mRNA_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:12935..13920+ (Laminarionema elsbetiae ELsaHSoW15) AAGACCAGGCAGGGGCGGCGGGATGGCATCGTCGAGAGAGCGATCTCGGA GGCGGACGACCTGGTGGTGTGCGTGCTTGACGCCGGGGGGGGAGAGGAAG ACGGCCGGGAGGCAGACGATGGAAGACCAGGCAGGGGCGGCGGGATGGCA TCGTCGAGAGAGCGATCTCGGAGGCGGACGACCTGGTGGTGTGCGTGCTT GACGCCGGGGGGGGAGAGGAAGACGGCCGGGAGGCAGACGATGGCTCCGC CCAGCCGCCCCCTCTTCTGCGCGGTTTCGACGATGACTGGGAGGCGTTCC GCGCTCGGGGAGAGTATTCGACGGAGCATTCGGAGCTCGAGACTGCCCCG CTGGCGACAGAGTCAGCTGCCACAGCGTTACCGGTCAGCGGGAATTCCAC CGTTTTGGACCGCGTCGGTGGTTGCGAACTTGTGCTTGCGCGGCGGGTTG GGCCAGCGGAGGTGGTGAAGCAGCTTCATCTATTGCCATTGCTCCGGAGG TGACTCCGCCCAGCCGCCCCCTCTTCTGCGCGGTTTCGACGATGACTGGG AGGCGTTCCGCGCTCGGGGAGAGTATTCGACGGAGCATTCGGAGCTCGAG ACTGCCCCGCTGGCGACAGAGTCAGCTGCCACAGCGTTACCGGTCAGCGG GAATTCCACCGTTTTGGACCGCGTCGGTGGTTGCGAACTTGTGCTTGCGC GGCGGGTTGGGCCAGCGGAGGTGGTGAAGCAGCTTCATCTATTGCCATTG CTCCGGAGGTGA back to top