mRNA_L-elsbetiae_contig19809.5918.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19809.5918.1
Unique NamemRNA_L-elsbetiae_contig19809.5918.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19809.5918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19809contigL-elsbetiae_contig19809:1407..2011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1997
Ec32 orthologEc-22_002370.1
Exons1
Model size606
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.2312212-UTR-L-elsbetiae_contig19809:1406..16391622815820.2312212-UTR-L-elsbetiae_contig19809:1406..1639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19809 1407..1639 +
1691683124.1474335-UTR-L-elsbetiae_contig19809:1406..16391691683124.1474335-UTR-L-elsbetiae_contig19809:1406..1639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19809 1407..1639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.2446234-CDS-L-elsbetiae_contig19809:1639..20111622815820.2446234-CDS-L-elsbetiae_contig19809:1639..2011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19809 1640..2011 +
1691683124.157295-CDS-L-elsbetiae_contig19809:1639..20111691683124.157295-CDS-L-elsbetiae_contig19809:1639..2011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19809 1640..2011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19809.5918.1prot_L-elsbetiae_contig19809.5918.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19809 1640..2011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19809.5918.1

>prot_L-elsbetiae_contig19809.5918.1 ID=prot_L-elsbetiae_contig19809.5918.1|Name=mRNA_L-elsbetiae_contig19809.5918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MRGSVPVTAPGCRRPSLLLTGLAVVGFQLTCAHGFVHIGSASRPLALSRP
PSRCCRVRSRAASRMSAAFPKVHQQGDEEALLSRGISHEEGDGPAETEPS
MEHRESELDGGGGGGGSENTAGKR
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mRNA from alignment at L-elsbetiae_contig19809:1407..2011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19809.5918.1 ID=mRNA_L-elsbetiae_contig19809.5918.1|Name=mRNA_L-elsbetiae_contig19809.5918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=605bp|location=Sequence derived from alignment at L-elsbetiae_contig19809:1407..2011+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCAGCCATCGTTTGGAGCCGTAGGGCCGTGCACTCCACACTAGTCTGA
GGGAAGCGCTTCTGTGGATTATAACACGTAGGGCAGAGCGGTCTGCGTTG
CGGTTTCGGGCCTTGCCTTATTCCTTCTGCTGTACTGCTGTCCGGCACTG
ACCGCCTGTGTCACCCACGTCAGTCACACCAGACAGCGGGAAGATTGACA
CAAACAACGGGTGGGGCGGGGTGCGTGGTTGCCATGCGGGGGAGCGTGCC
TGTTACAGCACCCGGTTGCCGTCGTCCCTCTCTTCTCCTCACCGGCCTGG
CGGTGGTCGGGTTCCAGCTCACGTGCGCCCATGGGTTCGTCCACATCGGC
AGCGCCAGCCGCCCGCTGGCCTTGTCTCGACCCCCTTCGCGGTGCTGCCG
CGTTCGAAGCAGAGCGGCGAGCCGCATGAGCGCCGCGTTCCCCAAGGTCC
ACCAGCAGGGCGACGAAGAAGCCTTGCTATCTCGCGGTATCTCGCACGAA
GAGGGCGACGGCCCCGCCGAAACAGAACCATCGATGGAGCATCGGGAATC
GGAGCTCGACGGCGGCGGCGGCGGCGGCGGCAGTGAAAACACCGCCGGGA
AGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19809:1407..2011+

>mRNA_L-elsbetiae_contig19809.5918.1 ID=mRNA_L-elsbetiae_contig19809.5918.1|Name=mRNA_L-elsbetiae_contig19809.5918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig19809:1407..2011+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGGGAGCGTGCCTGTTACAGCACCCGGTTGCCGTCGTCCCTCTCT
TCTCCTCACCGGCCTGGCGGTGGTCGGGTTCCAGCTCACGTGCGCCCATG
GGTTCGTCCACATCGGCAGCGCCAGCCGCCCGCTGGCCTTGTCTCGACCC
CCTTCGCGGTGCTGCCGCGTTCGAAGCAGAGCGGCGAGCCGCATGAGCGC
CGCGTTCCCCAAGGTCCACCAGCAGGGCGACGAAGAAGCCTTGCTATCTC
GCGGTATCTCGCACGAAGAGGGCGACGGCCCCGCCGAAACAGAACCATCG
ATGGAGCATCGGGAATCGGAGCTCGACGGCGGCGGCGGCGGCGGCGGCAG
TGAAAACACCGCCGGGAAGAGGATGCGGGGGAGCGTGCCTGTTACAGCAC
CCGGTTGCCGTCGTCCCTCTCTTCTCCTCACCGGCCTGGCGGTGGTCGGG
TTCCAGCTCACGTGCGCCCATGGGTTCGTCCACATCGGCAGCGCCAGCCG
CCCGCTGGCCTTGTCTCGACCCCCTTCGCGGTGCTGCCGCGTTCGAAGCA
GAGCGGCGAGCCGCATGAGCGCCGCGTTCCCCAAGGTCCACCAGCAGGGC
GACGAAGAAGCCTTGCTATCTCGCGGTATCTCGCACGAAGAGGGCGACGG
CCCCGCCGAAACAGAACCATCGATGGAGCATCGGGAATCGGAGCTCGACG
GCGGCGGCGGCGGCGGCGGCAGTGAAAACACCGCCGGGAAGAGG
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