mRNA_L-elsbetiae_contig19804.5917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19804.5917.1
Unique NamemRNA_L-elsbetiae_contig19804.5917.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.630e-22
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 3 
Query:  144 VENLLQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
            +E  L    DIVS + EFV+ +Q+LFFA V + W   WG+RP VT+A++AD SVSQL  SF CGL R+  V +  A +GRLDLL++AR  GCP +E TC
Sbjct:    1 MEKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
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BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.440e-21
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 3 
Query:  171 DIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
            DIVS +AEFV+ +Q+LFFA V + W   WG+RP VT+A++AD SV QL  SF CGL R+  V +  A +GRLDLL++AR  GC  +E TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
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BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.100e-21
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:  150 NLLQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCP 422
            N L +N  +V+HL E+V+ +Q+LFFA VC+ W   WG+RP VTRA +   SVSQL +SF+CGL R+  + + AA +GRLDLLQ A L GCP
Sbjct:    7 NPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCP 97
[Close]
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.680e-18
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3 
Query:  156 LQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
            L   +D+ S L EFV+ +QFLFFA VC++W   WGQRP  TRA++ D +V+QL  +F CGL+    V  + A +GRLDLLQ AR  GC  +E TC
Sbjct:    5 LFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMS7_ECTSI5.630e-2252.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE2.440e-2154.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU0_ECTSI4.100e-2153.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI2.680e-1850.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19804contigL-elsbetiae_contig19804:480..2006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue3.7e-13
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_001200.1
Exons2
Model size1337
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19804.5917.1prot_L-elsbetiae_contig19804.5917.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19804 1102..1956 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.1502676-UTR-L-elsbetiae_contig19804:479..5731622815820.1502676-UTR-L-elsbetiae_contig19804:479..573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 480..573 -
1691683124.101668-UTR-L-elsbetiae_contig19804:479..5731691683124.101668-UTR-L-elsbetiae_contig19804:479..573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 480..573 -
1622815820.1637783-UTR-L-elsbetiae_contig19804:763..11011622815820.1637783-UTR-L-elsbetiae_contig19804:763..1101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 764..1101 -
1691683124.114721-UTR-L-elsbetiae_contig19804:763..11011691683124.114721-UTR-L-elsbetiae_contig19804:763..1101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 764..1101 -
1622815820.1931472-UTR-L-elsbetiae_contig19804:1956..20061622815820.1931472-UTR-L-elsbetiae_contig19804:1956..2006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 1957..2006 -
1691683124.1363864-UTR-L-elsbetiae_contig19804:1956..20061691683124.1363864-UTR-L-elsbetiae_contig19804:1956..2006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19804 1957..2006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.1800025-CDS-L-elsbetiae_contig19804:1101..19561622815820.1800025-CDS-L-elsbetiae_contig19804:1101..1956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19804 1102..1956 -
1691683124.1273913-CDS-L-elsbetiae_contig19804:1101..19561691683124.1273913-CDS-L-elsbetiae_contig19804:1101..1956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19804 1102..1956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19804.5917.1

>prot_L-elsbetiae_contig19804.5917.1 ID=prot_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
MGNTLAGQTGTSGPPAKRPAPSQAGRQEASSVENLLQTNTDIVSHLAEFV
EGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSH
LVSDAAAWVGRLDLLQKARLRGCPCDETTCAAAAAAGSVSILEFLRDDGC
PWFAMTCIRAAEHGHLGVIKYAIANGCSLTEEDKFHVAARAAEGGHLTLL
QWLLSEGSVAWNEVMAVYAAQGGQIGVLEWARGKGFPLDVEELTSVAACE
GHKNTLLWLRANGFPFDEMTCFGAAQGGCLELLR*
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mRNA from alignment at L-elsbetiae_contig19804:480..2006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19804.5917.1 ID=mRNA_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1527bp|location=Sequence derived from alignment at L-elsbetiae_contig19804:480..2006- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTTAATACAGCGCAGGCGGTGCGTGCAAGAGCTACATTATCGGGTC
ATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCGGCGAA
GCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGTGGAGA
ACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGTTCGTG
GAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGGTGGTC
TCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGACGCGT
CAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGATCCCAC
CTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTTCAGAA
GGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGCGGCTG
CAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATGGGTGC
CCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCATCTTGG
CGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGAAGACA
AGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCTTACTC
CAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATGGCCGT
CTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAGGGGAA
AAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGTGCGAG
GGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCTTTCGA
TGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCTACTTC
GGTGATTACGAGATGAAATGTGCCCGTGGGACGAAAGCACCTGTACTGTG
GCCGCTTTCAGGGGTCACTTGCACATTCTGAAATGGGCTAGAGAGAATGG
GTGCCCGTGGAATGCCGAAGCCTGCTGCAATGCCGCGGTCGCGGGGAATT
TGGACTGTCTGAAGTACCTTAGATCCCAAGGATGTCCGTGGGATGTGGCC
ACCTGCGGATCGGCCGCTGCGTTTGGGCACCTCGATGTCCTAAAATACGC
CCGCTCGGAAGGCTGTCCCTGGAACGATTCCACCACCAAAAACGCCAGGA
AGGGCGGTCACATCAAAAATTTCAACTGGGCGGTCGCAAACGGGTGTGAC
GTTGCTCCTCAGGGTGGTATCATAATGCCACGTCGTTAGGGCGGGGCATG
TTTGGTGGGGGATACACCCTTTTGCTTGCTGGTACTCCCAGTGTTGAATT
TTTTGGACACGGTCGCCATGCCAACGTTTCAGGTGCATGTACCTGTGGTT
AGCCAAAAACTTCGTATCTATTTCGCCGCGCAGAGTGATCTCCTGGCACA
AGGACGAGGAGGAGGCTAGCCGACAACGGGCGATCGACCGAGACAAAAAA
CGGCCCAGCAGTAAAATAGACACGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19804:480..2006-

>mRNA_L-elsbetiae_contig19804.5917.1 ID=mRNA_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig19804:480..2006- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCGGCGAA
GCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGTGGAGA
ACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGTTCGTG
GAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGGTGGTC
TCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGACGCGT
CAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGATCCCAC
CTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTTCAGAA
GGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGCGGCTG
CAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATGGGTGC
CCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCATCTTGG
CGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGAAGACA
AGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCTTACTC
CAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATGGCCGT
CTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAGGGGAA
AAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGTGCGAG
GGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCTTTCGA
TGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCTACTTC
GGTGAATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCG
GCGAAGCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGT
GGAGAACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGT
TCGTGGAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGG
TGGTCTCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGA
CGCGTCAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGAT
CCCACCTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTT
CAGAAGGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGC
GGCTGCAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATG
GGTGCCCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCAT
CTTGGCGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGA
AGACAAGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCT
TACTCCAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATG
GCCGTCTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAG
GGGAAAAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGT
GCGAGGGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCT
TTCGATGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCT
ACTTCGGTGA
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