mRNA_L-elsbetiae_contig1980.5915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1980.5915.1 vs. uniprot
Match: D7G3E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E3_ECTSI) HSP 1 Score: 787 bits (2033), Expect = 8.510e-254 Identity = 774/1503 (51.50%), Postives = 880/1503 (58.55%), Query Frame = 1 Query: 1 PPGSCAARRWDEDDVLCLAPSRVFLGIVIGAARAGGKMVTPAAELLGKAAAVRPRNVAVETPRDRSIALIAPAAXXXXXXXXXXXXXXXXXXXXXSCSSARTTLYGVLADCMRGALDLMAMVLDGAAKLGQAVNPVRLERPRAVAGLAASCILVSLRHLGPLSSTPQSGTAVAASATAADGRVDPVPPPDAARSAAAAAGAFMEVLGRALDTRFSKHLGGAALTTVLSAVLHCWPXXXXXXLAXXXXXXXXXXXXXVAGGADAAGAVQRGYAMGWWRLDSDGRLRGSNSSGGADEPALNGSASSGAGAGEEA--------------QSGQDASGDEWGSFSFLDDPELDAILGGTT--ATP-QASXXXXXXXXXXXXXXXXXXXXXXKTWL---------SLADGARTHILPHLHEILRTTYTVARYAQGSSTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAVAGRS-SSIENSRVGAGTLLELHAAAALVVLHGXXXXXXXXXXXXXXXXXXXXXXXVGEPC----STYKAVRDRYLEVHRMAHNPLVPQQRLLAPAFFCLALGSGGGKGANDGGDGGSSGHRHPSALETGPGGGRETSPPRPGPPLLEALRGREWEVLQLWMQAALDPLVFPVSQRRHGLSRGGGGGGRGASREPSDIVRER-FEGFTRCLSDAFVEGACERSPVALDADIAGVFEKRLVRFEPAQLAALSSEEARVLERVLDLQSVVAHCGGLWSTALVRAGPQSLSEGDKKRVKDRVLKLVHHSIKSVGRFLHEVFPREARQQPSGRRRGRR----------CGSG-LPPPRYRSAFRRLYGRAAYSFAAFLLRICGGSMLKGPPLRELVDAFFEGVACRGPAAAVXXXXXXXXXXXXXXXX------------ASAPHSELTALAVKHVPDLLHGFSETNMTMKPVADWIKNIIDHAIHG---KPRSSSXXXXXXXXXXXXXXXLGNANANGDGNDAS-TPLLVSLALALRGDMAYSC-PGAGAGAV-GAPRLY-------DAYDGLTAAAALAPPPCRDPALRRKRRVDLRREMLGDQKLRVARFLMETATAGRTPRRHGDGAAGAT--------GTEQGRLQQQQQA----TISIHKARRLLALSTGVFGRRYPDDGGSGRAGTGXXXXXXXXXXXXXXHR---------------RPPLSAETDVLPLIRPAYSLLGEALLGDAGMARRLAPEAVAVASALAVAGLDY-IPAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN---------------VVTERRAAQCFAEVVVLAVSTHLGMVLASVRRTPADGGVDGGSGGDGSGLADLGPRESLLERLLEGLGAWECHGGEGR-GWPHSSLPAAAVENSRSGREGGAEAAAAGAGPRAGPEGIEQSSHAVED-GIPLSELFKEVEKMIADLRST----GAEGETGEAMRRLLDSALAPRLEACKAY 4158 P G ++ RWDEDDVL LAP RV LGI +G A A KM AAE+L KAAAVRPR+VA + PRDRSIAL+APAAXXXXXXXX XXXXXXXXXS +S R TLYGVLA CM ALDLMAMVLDGA++LG V+ +LERPRAV GL SCILV+LRHLGPL+ P +A A AF+EVLGRALDTRFSKHLG +AL+ V+SAVLHCWP XXXXX X G A+ G +RGYAMG WRL+ DG S+ G N + GEEA + G D DE+GS + D EL +L G A P Q S XXXXXXXXXXXXXXXXXXXX + SLADGARTH+LPHLH IL+TT+T ARYAQ S+++S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G S SS + S V AGT+LELHA+AALV L+G XXXXXXX X S V D+YLE+HRM HNPL+PQQRLLA AFFCL L D + GR + P P PPLLEALRG+EWE+L LW+QAALDPL FP S+R RGG R +S+EPSDIV++R +G + L LDAD+AGVFEKR+VRFEPAQL ALS +E + LERVLDLQSVVAHCG L+ TA+VRAGP L E D+KR+KDRV+KL H +IK++ RFL EVFPRE Q R RG R G G LPP RY SAFRRLYG AAYS AAFL+R+CGG +LKG PL ELV+A FE +ACRGPA AV XXXXXXXXXXXXXX S PH+EL ALAV H+PDLL SET +TM PV WIKNI DHAIHG PRS ANAN + S TPLL SLA LRGD AY C P G G GA DA+ L AAAALAP P RDPA+R + R LR+EMLGD+KLRVARFL+E A G GTE R++ +S+ K RLLAL GV GR XXXXXXXXXXXXXX RPPLS + DVL LIRP Y+LLGEALLG+ G+ARRL E +AVASALAVAGLD+ +PA XXXXXXXXXXXXXXXXX G ERRA +CFAE VVLAVST LG V+ASV GLADLGP ES LERLL LGAWE GG GWPH G + + VED +PL EL + EK+ A +RS GA G +G +RRL D AL PR++AC+A+ Sbjct: 25 PGGESSSVRWDEDDVLALAPWRVLLGIALGVAPADVKMAAVAAEMLVKAAAVRPRDVAGDAPRDRSIALVAPAAXXXXXXXXRSDGXXXXXXXXXS-NSVRATLYGVLAGCMGSALDLMAMVLDGASRLGHVVSADKLERPRAVIGLTVSCILVALRHLGPLAEPPLPPANTPQAAAVGSNAXXXXXXXXXXXXXXXXARAFVEVLGRALDTRFSKHLGSSALSMVMSAVLHCWPPXXXXXXXXD-------------GVAETEGG-RRGYAMGLWRLEPDGS---SSRDGXXXXXXXNRAGEPSVDCGEEARVAXXXXXXXANQPEQGTDIFEDEFGSLVY--DAELQGLLDGGAGGANPXQPSAQXXXXXXXXXXXXXXXXXXXXXXXIEKGREEVRRSLADGARTHVLPHLHAILKTTHTAARYAQASASASVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHSTSSTDFSIVDAGTVLELHASAALVALNGSDSVGFGGGGRSGSXXXXXXXQXXXXXXXXSGSGLNGVCDKYLEMHRMGHNPLMPQQRLLAAAFFCLVL-------EGDXXXXXXXXXXXXGNTDV----GRSLAHPCPAPPLLEALRGKEWEILHLWVQAALDPLAFPASRRGDRRPRGGXXXXR-SSKEPSDIVKDRPGDGQQQQLKP-------------LDADLAGVFEKRVVRFEPAQLTALSHDETQALERVLDLQSVVAHCGTLYETAMVRAGPGLLPEKDRKRIKDRVVKLAHKAIKTLRRFLPEVFPRE---QQGYRARGARXXXXXRSSSSAGEGVLPPARYGSAFRRLYGHAAYSLAAFLMRMCGGRVLKGAPLCELVEAMFESIACRGPADAVGGXXXXXXXXXXXXXXXXXXXXXXXXXRVSVPHAELRALAVTHLPDLLQCLSETTLTMPPVTGWIKNINDHAIHGGDQTPRSDDT----------------RANANASAANLSFTPLLASLASGLRGDPAYPCCPRRGRGVTTGAXXXXXXXXXXDDAFGDLAAAAALAPLPGRDPAVRSRLREGLRQEMLGDRKLRVARFLLEAAVVGXXXXXXXXXXXXXXXXXXXXXXGTELQRVRXXXXXXXXMALSVSKTGRLLALLAGVLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPPLSVKKDVLVLIRPVYALLGEALLGEKGLARRLTREILAVASALAVAGLDHTLPATAATITXXXXXXXXXXXXXXXXXYGQGEATGATAPGRGAVDVVGAGVESPAAAAIERRAVECFAEAVVLAVSTSLGAVVASVAXXXX---XXXXXXXXXXGLADLGPCESDLERLLVSLGAWESRGGXXXXGWPHXXXXXXXXXXXXXXXXXXXX-------XXXGQDAV------VEDIDMPLPELLDDAEKLSAAVRSAATKGGAGGASGAIVRRL-DGALVPRIKACRAF 1446
BLAST of mRNA_L-elsbetiae_contig1980.5915.1 vs. uniprot
Match: A0A6H5K8X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X1_9PHAE) HSP 1 Score: 801 bits (2070), Expect = 3.790e-244 Identity = 788/1647 (47.84%), Postives = 899/1647 (54.58%), Query Frame = 1 Query: 1 PPGSCAARRWDEDDVLCLAPSRVFLGIVIGAARAGGKMVTPAAELLGKAAAVRPRNVAVETPRDRSIALIAPAAXXXXXXXXXXXXXXXXXXXXXSCSSARTTLYGVLADCMRGALDLMAMVLDGAAKLG-----------------------------------------------------------------------------------------------------------------------------------------QAVNP------------------VRLERPRAVAGLAASCILVSLRHLGPLSSTPQSGTAVAASATAADGRVDPVPPPDAARSAAAAAGAFMEVLGRALDTRFSKHLGGAALTTVLSAVLHCWPXXXXXXLAXXXXXXXXXXXXXVAGGADAAGAVQRGYAMGWWRLDSDG---RLRGSNSSGGADEPALN--GSA--SSGAGAGEEAQSGQDASGDEWGSFSFLDDPELDAILGGTT--ATPQASXXXXXXXXXXXXXXXXXXXXXXKTWL-------SLADGARTHILPHLHEILRTTYTVARYAQGSSTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAVAGRS-SSIENSRVGAGTLLELHAAAALVVLHGXXXXXXXXXXXXXXXXXXXXXXXVGEPCSTYK----AVRDRYLEVHRMAHNPLVPQQRLLAPAFFCLALGSGGGKGANDGGDGGSSGHRHPSALETGPGGGRETSPPRPGPPLLEALRGREWEVLQLWMQAALDPLVFPVSQRRHGLSRGGGGGGRGASREPSDIVRERFEGFTRCLSDAFVEGACERSPVA-------LDADIAGVFEKRLVRFEPAQLAALSSEEARVLERVLDLQSVVAHCGGLWSTALVRAGPQSLSEGDKKRVKDRVLKLVHHSIKSVGRFLHEVFPREARQQPSGRRRGRRC----------GSG-LPPPRYRSAFRRLYGRAAYSFAAFLLRICGGSMLKGPPLRELVDAFFEGVACRGPAAAVXXXXXXXXXXXXXXXXA-----SAPHSELTALAVKHVPDLLHGFSETNMTMKPVADWIKNIIDHAIHGKPRSSSXXXXXXXXXXXXXXXLGNANANGDGNDAS-TPLLVSLALALRGDMAYSC-------PGAGAGAVGAPRLYDAYDGLTAAAALAPPPCRDPALRRKRRVDLRREMLGDQKLRVARFLMETATAGRTPRRHGDGAAG---------ATGTEQGR----LQQQQQATISIHKARRLLALSTGVFGRRYPDDGGSGRAGTGXXXXXXXXXXXXXXHR-----------------RPPLSAETDVLPLIRPAYSLLGEALLGDAGMARRLAPEAVAVASALAVAGLDYIPAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNVVT--------------------ERRAAQCFAEVVVLAVSTHLGMVLASVRRTPADGGVDGGSGGDGSGLADLGPRESLLERLLEGLGAWECHGGEG-RGWPHSSLPAAAVENSRSGREGGAEAAAAGAGPRAGPEGIEQSSHAVEDGIPLSELFKEVEKMIADLRST---GAEGETGEAMRRLLDSALAPRLEACKAY 4158 P G ++ RWDEDDVL LAP RV LGI +G A A KM AAE+L KAAA+RPR+VA + PRDRSIAL+APAA XXXXXX S +S R TLYGVLA CM ALDLMAMVLDGA++LG + ++P V LERPRAV GL SCILV+LRHLGPLS P GAF+EVLGRALDTRFSKHLG +AL+ V+SAVLHCWP XXXXX A G +RGYAMG WRL+ DG R GS+SS A EP ++ G A ++GAG + + G D DE+GS + D EL +L G A P XXXXXXXXXXXXXXXXXXXXXX SLADGARTH+LPHLH IL+TT+T ARYAQGS+++S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A AG S SS ++S V AGT+LELHA+AALV L+G XXXXXXXX D+YLEV+RM HNPL+PQQRLLA AFFCL L GG D GS + H GR + P P PPLLE LRGREWE+L LW+QAALDPL FP S+ R RGGGGG R +S+EPSDIV++RFEGFTR L AF R LDAD+AGVFEKR+VRFEPAQL ALS +E +VLERVLDLQSVVAHCG L+ TA+VRAGP L E D+KR+KDRV+KL H +IK++ RFL EVFPRE Q R RG R G+G +PP RY AFRRLYG AAYS +AFL+R+CGG +LKG PL ELV+A FEG+ACRGP AV XXXXXXXXXXXXXXX S PH+EL ALAV H+PDLL SET +TM PV WIKNI D AIHG ++ +AN N + S TPLL SLA LRGD+AY C GAG G DA+ L AAALAP P RDPA+R + R LR+EMLGD+KLRVARFL+E A AG GTE R LQQQQ+ +S+ K RLLAL TGV GRR D G G XXXXXXXXXXXXXX RPPLS + DVL LIRP Y+LLGEA LG+ G+ARRL E +AVA+ALAVAGLD+ A XXXXXXXXXXXXXXXXXXXXXX G + ERRA +CFAE VVLAVST LG V+ASV A GLADLGPRES LERLL LGAWE GG G RGWPHS+ G Q + E +PL EL + EK+ A LRS G G T A+ R LD ALAPR++AC+A+ Sbjct: 1996 PGGESSSVRWDEDDVLALAPWRVLLGIALGVAPADAKMAAVAAEMLVKAAAIRPRDVAADAPRDRSIALVAPAAAALCLALPRSGGSGXXXXXXSS-NSVRATLYGVLAGCMGSALDLMAMVLDGASRLGHVIVGGWCPTVQLTAALAQRGGEDAQTVVVARGKNRALQRWIAARKFAARKIRKKAHPQREVDREGRETAVKAAAKKKAREGDLSFGTFNGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGLERPRAVIGLTVSCILVALRHLGPLSE-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFVEVLGRALDTRFSKHLGSSALSMVMSAVLHCWPPXXXXX----------------ADGVLETEGGRRGYAMGLWRLEPDGSSSRGGGSSSSNRAGEPTVDCGGEARVAAGAGGANQPEQGADIFEDEFGSLVY--DAELQDLLDGGAGGADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEFRRSLADGARTHVLPHLHAILKTTHTAARYAQGSASASVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMS----GAATAGPSPSSTDSSIVDAGTVLELHASAALVALNGSDSGGFGGGGRSXXXXXXXXSQAXXXXXXXXXXGLTGACDKYLEVYRMGHNPLMPQQRLLAAAFFCLVLEGGGS-------DSGSGSNAHV---------GRSLAHPCPAPPLLETLRGREWEILHLWVQAALDPLAFPASRPRDRRPRGGGGGRR-SSKEPSDIVKDRFEGFTRYLCAAFRPAGGGRPGDGQQQQLKPLDADLAGVFEKRVVRFEPAQLTALSHDETQVLERVLDLQSVVAHCGTLYETAMVRAGPGLLPEKDRKRIKDRVVKLAHKAIKTLRRFLPEVFPRE---QQGYRARGARXXXXXXXSSSGGTGVMPPARYGLAFRRLYGHAAYSLSAFLMRMCGGRVLKGAPLCELVEAMFEGIACRGPGGAVGXXXXXXXXXXXXXXXXXXXRESVPHAELRALAVTHLPDLLQCLSETTLTMPPVTGWIKNINDQAIHGGDQTPPSDDP-------------HANPNASAANLSFTPLLASLASGLRGDLAYPCCPRRGRAVTTGAGGGGRGEGDDAFGELATAAALAPLPGRDPAVRSRLREGLRQEMLGDRKLRVARFLLEAAVAGXXXXXXXXXXXXXXXXXXXXVVVGTELQRVRQQLQQQQKMALSVRKTGRLLALLTGVLGRRRLGDDDDGDGGXXXXXXXXXXXXXXXXXXAGPPWPSPVSRQQPPLGRPPLSVKKDVLVLIRPVYALLGEAFLGEKGLARRLTREILAVAAALAVAGLDHTLPATAATIXXXXXXXXXXXXXXXXXXXXXXHGQGEAAGAMAPGRGAVDAVRAGVESPPAAAIERRAVECFAEAVVLAVSTSLGAVVASV----AGXXXXXXXXXXXXGLADLGPRESDLERLLVSLGAWESRGGGGGRGWPHSAPXXXXXXXXXXXXXXGG-----------------QDAVVEEIDMPLPELLDDAEKLSAALRSAATRGGAGGTSRAIVRRLDGALAPRIKACRAF 3564 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1980.5915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1980.5915.1 >prot_L-elsbetiae_contig1980.5915.1 ID=prot_L-elsbetiae_contig1980.5915.1|Name=mRNA_L-elsbetiae_contig1980.5915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1383bp MVTPAAELLGKAAAVRPRNVAVETPRDRSIALIAPAAAALCLALSRSSCGback to top mRNA from alignment at L-elsbetiae_contig1980:234..7919+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1980.5915.1 ID=mRNA_L-elsbetiae_contig1980.5915.1|Name=mRNA_L-elsbetiae_contig1980.5915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7686bp|location=Sequence derived from alignment at L-elsbetiae_contig1980:234..7919+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1980:234..7919+ >mRNA_L-elsbetiae_contig1980.5915.1 ID=mRNA_L-elsbetiae_contig1980.5915.1|Name=mRNA_L-elsbetiae_contig1980.5915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8298bp|location=Sequence derived from alignment at L-elsbetiae_contig1980:234..7919+ (Laminarionema elsbetiae ELsaHSoW15)back to top |