mRNA_L-elsbetiae_contig198.5912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig198.5912.1
Unique NamemRNA_L-elsbetiae_contig198.5912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: D8LKL2_ECTSI (Tubulin-specific chaperone A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL2_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.780e-46
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLPADQLEEARGLLAKAGV 273
            RMVKEVASYE EAKENEA+VQKMRDDGKD YDIRKQEEVLQESYMMIPDSKSRLA  LEDMEGFL EHAGA+GLP DQLEEA+GLL +AG+
Sbjct:   17 RMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEVLQESYMMIPDSKSRLAKALEDMEGFLGEHAGAEGLPTDQLEEAKGLLVEAGI 107
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A7S2W3S2_9STRA (Tubulin-specific chaperone A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.710e-21
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLPA-DQLEEARGLLAKAGV 273
            RM KEVA Y  EA+ENEARVQK +D GKD +D++K EEVL+ESYMMIPDSK+RL   +ED+  F+ EH   +G+   +QLE A  +L + G 
Sbjct:   25 RMAKEVAFYHREAEENEARVQKFKDAGKDIHDVKKAEEVLEESYMMIPDSKNRLQKAVEDLLVFVEEHRKEEGVAGTEQLEAALQVLTEHGA 116
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A6V2H5K8_9STRA (Tubulin-specific chaperone A n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2H5K8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.730e-18
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLPADQLEEARGLLA 261
            R+ KE   YE E KENE ++ KM+ DG+DPYDI+K EEVL ESYMM+PDSK+RL   LED+  FL  ++      ++ + EA+ ++A
Sbjct:   20 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEVLGESYMMVPDSKARLKKALEDLSLFLKNNSNVLDPESESMSEAKSIVA 106
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A6U3QVJ1_9STRA (Tubulin-specific chaperone A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QVJ1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-18
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLPADQLEEARGLLA 261
            R+ KE   YE E KENE ++ KM+ DG+DPYDI+K EEVL ESYMM+PDSK+RL   LED+  FL  ++      ++ + EA+ ++A
Sbjct:   24 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEVLGESYMMVPDSKARLKKALEDLSLFLKNNSNVLDPESESMSEAKSIVA 110
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: K8Z7U7_NANGC (Tubulin-specific chaperone A n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7U7_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 9.160e-17
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSE 201
            R++KE ASYE EA   E ++  MR +G+D YDI+KQEEVLQESYMMIPDSKSRL   LE +  FL++
Sbjct:   28 RLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQ 94
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A835YMR5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-16
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLP-ADQLEEARGLLAKAGVA 276
            R+ KEVASYE EA  NEA+V+ M+D+G+D +D+RK EE+L ES MMIPDSKSRL   +E++ G L+   G +G+   D   +A+ L+   G++
Sbjct:   15 RLAKEVASYEKEASTNEAKVRAMKDEGRDAHDVRKAEEILAESCMMIPDSKSRLQVAVEELAGMLAASEGEEGVKDTDDYADAKALVEAHGLS 107
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A8J9X6S7_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6S7_PHATR)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-15
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSE 201
            R++KEV  Y+ E +ENE ++Q+M+DD +DPYD++K  EVL ESYMM+PDS++RLA  + ++  FL E
Sbjct:    1 RLLKEVNYYQKEVQENEVKLQQMKDDNRDPYDVKKFAEVLDESYMMVPDSEARLAQAVHELRDFLEE 67
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: UPI001EE5A3F6 (tubulin-specific chaperone A-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5A3F6)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-14
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHA-----GADGLPADQLEEARGLLA 261
            R+ KE + YE E +  EARV K++DDG D +DIRKQ EVLQES MMIPD+K RL T  E++E  L   +     G  G   D LE A+  +A
Sbjct:   41 RLTKEKSMYEKEVETLEARVNKLKDDGADEHDIRKQTEVLQESRMMIPDTKKRLKTAYEELEQILQNDSDLSERGEFGQAKDALEAAKAAIA 132
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A7S4I4N1_9STRA (Tubulin-specific chaperone A n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I4N1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.870e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGL 222
            R++KE A YE E KENE ++Q M+++ +DPYDI+K EEV+ ES MM+PDS++R+   LED+E +L      +G+
Sbjct:   23 RLIKESAYYEEEVKENETKLQVMKEENRDPYDIKKFEEVVDESRMMVPDSRARMRRALEDLEQYLQSDEVKEGV 96
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BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Match: A0A7S2A0Z1_TRICV (Tubulin-specific chaperone A n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0Z1_TRICV)

HSP 1 Score: 72.8 bits (177), Expect = 3.950e-14
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 RMVKEVASYETEAKENEARVQKMRDDGK-DPYDIRKQEEVLQESYMMIPDSKSRLATVLEDMEGFLSEHAGADGLPADQLEEARGLL 258
            R++KE + YETE  ENE ++ +M+ DG  DPYD++K EEVL+ES MM+PDS+SR    LED+ GFL  +        + + +AR L+
Sbjct:   45 RLLKEASYYETEVAENETKLSRMKADGAADPYDVKKFEEVLEESRMMVPDSRSRARRALEDLAGFLESNEAELDQGGEWVAKARDLI 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig198.5912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL2_ECTSI7.780e-4686.81Tubulin-specific chaperone A n=1 Tax=Ectocarpus si... [more]
A0A7S2W3S2_9STRA9.710e-2155.43Tubulin-specific chaperone A n=1 Tax=Rhizochromuli... [more]
A0A6V2H5K8_9STRA1.730e-1849.43Tubulin-specific chaperone A n=2 Tax=Ditylum brigh... [more]
A0A6U3QVJ1_9STRA1.910e-1849.43Tubulin-specific chaperone A n=1 Tax=Ditylum brigh... [more]
K8Z7U7_NANGC9.160e-1761.19Tubulin-specific chaperone A n=3 Tax=Monodopsidace... [more]
A0A835YMR5_9STRA1.310e-1648.39P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J9X6S7_PHATR1.370e-1552.24Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
UPI001EE5A3F61.020e-1448.91tubulin-specific chaperone A-like n=1 Tax=Haliotis... [more]
A0A7S4I4N1_9STRA1.870e-1448.65Tubulin-specific chaperone A n=2 Tax=Odontella aur... [more]
A0A7S2A0Z1_TRICV3.950e-1445.98Tubulin-specific chaperone A n=1 Tax=Trieres chine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig198contigL-elsbetiae_contig198:23795..25751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.7e-34
Seed eggNOG ortholog2880.D8LKL2
Preferred nameTBCA
KEGG koko:K17292
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006457,GO:0007021,GO:0007023,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044183,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048487,GO:0051087,GO:0065003,GO:0070013,GO:0071840
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG3470@1,KOG3470@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Ec32 ortholog descriptionputative: Beta-tubulin folding cofactor A
Ec32 orthologEc-16_003390.1
Exons2
Model size279
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig198.5912.1prot_L-elsbetiae_contig198.5912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig198 23798..25751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.470033-UTR-L-elsbetiae_contig198:23794..237971622815819.470033-UTR-L-elsbetiae_contig198:23794..23797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig198 23795..23797 +
1691683123.5682104-UTR-L-elsbetiae_contig198:23794..237971691683123.5682104-UTR-L-elsbetiae_contig198:23794..23797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig198 23795..23797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.4842908-CDS-L-elsbetiae_contig198:23797..239081622815819.4842908-CDS-L-elsbetiae_contig198:23797..23908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig198 23798..23908 +
1691683123.5899503-CDS-L-elsbetiae_contig198:23797..239081691683123.5899503-CDS-L-elsbetiae_contig198:23797..23908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig198 23798..23908 +
1622815819.4980893-CDS-L-elsbetiae_contig198:25586..257511622815819.4980893-CDS-L-elsbetiae_contig198:25586..25751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig198 25587..25751 +
1691683123.600765-CDS-L-elsbetiae_contig198:25586..257511691683123.600765-CDS-L-elsbetiae_contig198:25586..25751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig198 25587..25751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig198.5912.1

>prot_L-elsbetiae_contig198.5912.1 ID=prot_L-elsbetiae_contig198.5912.1|Name=mRNA_L-elsbetiae_contig198.5912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MVKEVASYETEAKENEARVQKMRDDGKDPYDIRKQEEVLQESYMMIPDSK
SRLATVLEDMEGFLSEHAGADGLPADQLEEARGLLAKAGVA*
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mRNA from alignment at L-elsbetiae_contig198:23795..25751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig198.5912.1 ID=mRNA_L-elsbetiae_contig198.5912.1|Name=mRNA_L-elsbetiae_contig198.5912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1957bp|location=Sequence derived from alignment at L-elsbetiae_contig198:23795..25751+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATGGTGAAGGAGGTAGCGAGCTACGAGACCGAGGCCAAGGAAAACGA
GGCGAGGGTGCAGAAGATGAGGGACGACGGGAAGGACCCCTACGACATCA
GGAAGCAAGAGGAGGTGCATACATTGTTTTTTTTTTCTTCCCTCCCATTA
TTGGCATATTTGTTTGTCGTCTGCCCCACTGCCCCCCGTACTCCACTACG
ACTAGCTAGACGACCCAACCGGGGTCACGCATATACACCTGCAGTCTAGA
TACCGTACGACTGCTGTGCTGTGCTGTGCTGTGCCATGATACAAAACCGC
AGACATCCGAGCAACTAGACCGGGAGGAGAAAGGGTTCATGCGTCATGGT
GGCGCACGAACGCCGCAGCACACACGCTATGCAGCGAGAACAAGCTGGTT
CAGATTGAACGCCCAAAATTCATTCCCCGGGATTTCCTCACGCCGTTTCT
TCGAGTTAAGCCACGAAATTTTGCACACTTGCTCTGGAAAGCACTATCTA
AAACTCGAAGAAAGTTTTTTTTTGATTTTGGGCTTCGCTGTCGAGATATC
CGGGATTAACCCCCCCCCCCCGGTCAAGTACTCCAGCCGGGACCCCGAAT
AACCGGCCAGCAAGACAAAAAATTAAAAAAACCCTCAGTTCGAGTTTTAG
ATACAAACGTCCAGAACATGTGTGCAAAATTTCGTGGTCTAACTCGAAGA
AACGGCGTGAGGAAATTGCAAAACGTGCGCTGAAGCATAAAACGTCTGCG
TGCCCCCCTAATTACCTGATTAAAGTATACTTTGGACATTTTTCACGTTT
TTTTCACGGCCAACGACCCTGCGGCGTCAGTCTTTTGAGTTATCCAACCA
AACTTGGTACGAATATTCCTTGGGGGACGGCGGAGCGCGTGGAAGTTTTT
GTTTTGCGAACAGGGCTCTGTACTGGCTATCGGGGGTCCTGAGGCCGGCG
GGACCCCCGGAAGCCAGTACAGACCGACCCACCTACCGGAACACCCCGGA
ATATTTTTTTTCATATTTGCAGCATCAATATCCATCACGATGTCAAGTTT
GAGATTGATTTAATTTTTTTTCGGGGAGATATGCAAGAAACCGTTGGCGC
CGGTTCTCCGGTCTTAGTCCTATATCATCAGCAAAAATTGGCGTCGTCGT
AACCGAAACATAATATTTTTGGGTATAACTCGATGCCAGGACAACCGTTT
TCAAAACCTTTTTTTTTGTTAGGTTCCCTAGAGGATCGCAATTGCGATGA
TACCAAAAGTGTGGAGATTGAACGGCATTTTGGGTTGAAAATTCGTATTT
TTGGTAGAAGACAATTTGGAGGCCGCTGATTGGCCGAGACTGCATTTCCG
CCTATAGCTTCGCACCCAAACCCAAAATTCGAAAAAGGAACATGTCACCT
TGTTGAGTCGCTCGTAGGCAACACTACGATACCGATTTCATCAAAATTGA
GCCTGTATTGCGTTCGTTATTGGTCGGGGAATGAATTTTGGGCGTTCAAT
CTGAACCAGCTTGTAGAGCAGACGCGTACTTGCTGCGTCCTGAAGTCTAC
CATTGCGCTTGCTGACCGAAAATCTGCTCTTTATTTTTCTTCGTTTGCAT
CCAACTCTCGGGTAAGTGAATCAGACGAGTCCACAGCAGTACTCGGAGGG
TTCGCGGCAGCCCCAGATGGATGTACGTAAGCTACTGTGTTGATGTTCAC
GGTAAGTGGTGTACCACCACCACCACTGCCATTGCCGACTTTACCCGATG
AGCAAATAGACCATCCGGTGCTCCTTGCAACCCAACTCCCAGGTTTTGCA
GGAGAGCTACATGATGATCCCCGACAGCAAGTCCCGGCTGGCAACGGTTT
TGGAGGATATGGAAGGCTTTCTTAGCGAGCACGCAGGCGCGGACGGGCTG
CCAGCCGACCAGCTGGAAGAGGCAAGGGGCTTGCTGGCGAAGGCAGGCGT
CGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig198:23795..25751+

>mRNA_L-elsbetiae_contig198.5912.1 ID=mRNA_L-elsbetiae_contig198.5912.1|Name=mRNA_L-elsbetiae_contig198.5912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig198:23795..25751+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAAGGAGGTAGCGAGCTACGAGACCGAGGCCAAGGAAAACGAGGC
GAGGGTGCAGAAGATGAGGGACGACGGGAAGGACCCCTACGACATCAGGA
AGCAAGAGGAGATGGTGAAGGAGGTAGCGAGCTACGAGACCGAGGCCAAG
GAAAACGAGGCGAGGGTGCAGAAGATGAGGGACGACGGGAAGGACCCCTA
CGACATCAGGAAGCAAGAGGAGGTTTTGCAGGAGAGCTACATGATGATCC
CCGACAGCAAGTCCCGGCTGGCAACGGTTTTGGAGGATATGGAAGGCTTT
CTTAGCGAGCACGCAGGCGCGGACGGGCTGCCAGCCGACCAGCTGGAAGA
GGCAAGGGGCTTGCTGGCGAAGGCAGGCGTCGCATGAGTTTTGCAGGAGA
GCTACATGATGATCCCCGACAGCAAGTCCCGGCTGGCAACGGTTTTGGAG
GATATGGAAGGCTTTCTTAGCGAGCACGCAGGCGCGGACGGGCTGCCAGC
CGACCAGCTGGAAGAGGCAAGGGGCTTGCTGGCGAAGGCAGGCGTCGCAT
GA
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