mRNA_L-elsbetiae_contig19778.5903.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19778.5903.1
Unique NamemRNA_L-elsbetiae_contig19778.5903.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.880e-57
Identity = 107/166 (64.46%), Postives = 109/166 (65.66%), Query Frame = 1
Query:    1 EYDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWA----HEMERE---------------------------------------------ELRPSSEFTMYAHTDLGGVLPASVINKLCKK 351
            EYDRMFDRYELVERPNDHTSVRWT Y AIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMV  G+      E  R+                                             ELRPSSEFTMYAHTDLGGVLPASVINKLCKK
Sbjct:  470 EYDRMFDRYELVERPNDHTSVRWTCYQAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVTCGYVICPLGESRRQRRASKSIKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSRSMELRPSSEFTMYAHTDLGGVLPASVINKLCKK 635          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.220e-57
Identity = 106/166 (63.86%), Postives = 109/166 (65.66%), Query Frame = 1
Query:    1 EYDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWA----HEMERE---------------------------------------------ELRPSSEFTMYAHTDLGGVLPASVINKLCKK 351
            EYDRMFDRYE+VERPNDHTSVRWT Y AIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMV  G+      E  R+                                             ELRPSSEFTMYAHTDLGGVLPASVINKLCKK
Sbjct:  140 EYDRMFDRYEMVERPNDHTSVRWTCYQAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVTCGYVICPLGESRRQRRASKSIKPSTPXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSRSMELRPSSEFTMYAHTDLGGVLPASVINKLCKK 305          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A418AMN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AMN5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.920e-17
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   31 LVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            L+  PN  TSVR  +   ++PT  RDFV+ ST E   D  +VIATRS++H   P T TFVRG +   G+  +       P+   TM AH DLGG+LPA VIN L
Sbjct:   19 LMTLPNSTTSVRHITAKPVFPTAARDFVVMSTMEVKPDDVVVIATRSMDHATAPATSTFVRGHINISGYILDPVDLGPEPACHVTMMAHMDLGGMLPAVVINLL 122          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A7S2V6S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6S8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.890e-17
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 EYDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFA---DGTIVIATRSVEHEDYPETPTFVRGKMVRVGWA--HEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            EYD +FD+ + V++P+ H+ VR   Y AIWPT PRDF+  +TW+      +G  VIA++SV+    P +    RG +   G++       +   P +   M AH DLGG +PAS+IN L
Sbjct:   84 EYDSLFDKIQDVDKPDGHSVVRHLKYKAIWPTSPRDFITYTTWKRVGAKREGW-VIASKSVDLTKGPSSRKHTRGNVYSFGYSLMPTTMPDTGEPGTVLRMTAHMDLGGSMPASIINFL 201          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A024TBS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBS2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.490e-17
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   31 LVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            L+  PN  TSVR  +   ++PT  RDFV+ ST E   D  +VIATRS++H   P T  FVRG +   G+  +       P+   TM AH DLGG+LPA VIN L
Sbjct:  366 LMALPNSTTSVRHITAKPVFPTAARDFVVMSTMEVKPDDVVVIATRSMDHATAPATSNFVRGHINISGYILDPVDLGPEPACHVTMMAHMDLGGMLPAVVINLL 469          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A067C6Z9_SAPPC (START domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6Z9_SAPPC)

HSP 1 Score: 78.2 bits (191), Expect = 2.620e-15
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    4 YDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            +D M D   ++E   + TS+R+     ++PT  RDF++ ++ +   DG+IVI T+SVEH+  P    FVR      G+   + R     S   T+  H DLGG +PA+VIN L
Sbjct:   97 FDEMTDNCRVIEALKESTSIRYVQAKPVFPTTARDFLVVTSQQHLDDGSIVIGTKSVEHDSVPVDKHFVRAHTHVSGY---IVRPLTPTSCSVTLIVHMDLGGYMPAAVINLL 206          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A6G0WE54_9STRA (START domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE54_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.740e-15
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    4 YDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSS----EFTMYAHTDLGGVLPASVINKL 342
            ++ M +   ++   +  TS+R     A++PT  RDFV+  T E  +D  IVIATRS+ H+D PE P FVR  M+  G+        +RP+     + TM AH DLGG  PA VIN L
Sbjct:   89 FEEMTEYCHVIANVDVATSIRHVKAKAVFPTTARDFVV-VTSESRSDKAIVIATRSILHDDMPEDPHFVRATMLISGYV-------IRPTGKHQCQVTMVAHVDLGGHFPAFVINLL 197          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A1V9YKF4_9STRA (START domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKF4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.200e-14
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    4 YDRMFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSS----EFTMYAHTDLGGVLPASVINKL 342
            +D M D   +VE  N   S+R+     ++PT  RDF++  T E+    TIVI T+S++H+D PE  +FVR      G+        LRP S    + T+  H DLGG +PA+VIN L
Sbjct:   85 FDEMTDNCRVVEVLNPTASIRYVQAKPVFPTTARDFLV-VTAEQRVGDTIVIGTKSIKHDDVPEDGSFVRAHTHVSGYL-------LRPVSSTECQVTLIVHMDLGGYMPAAVINLL 193          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: T0RYD8_SAPDV (START domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RYD8_SAPDV)

HSP 1 Score: 71.6 bits (174), Expect = 1.400e-13
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    4 YDRMFDRYELVE--RPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            +D M D   ++E   P +  ++R+     ++PT  RDF++ ++ +   DG+IVI T+SVEH+  P    FVR      G+   + R     S   T+  H DLGG +PA VIN L
Sbjct:    4 FDEMTDNCRIIEALNPAETKTIRYVQAKPVFPTTARDFLVVTSEQRLDDGSIVIGTKSVEHDSVPVDKHFVRAHTHVSGY---IVRPLTPTSCSVTLIVHMDLGGYMPAYVINLL 115          
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Match: A0A6G0WBH1_9STRA (START domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBH1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-13
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   55 TSVRWTSYCAIWPTRPRDFVIRSTWEEFADGT-IVIATRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGGVLPASVINKL 342
            TSVR      I+PT+ R+FV+ S+  +  DG+ IVIATRS+ HED PE     R  M+  G+      +    + E T+ AH DLGG+LPA+VIN L
Sbjct:  174 TSVRHVKAKPIFPTQVREFVVISSEHKAEDGSMIVIATRSIHHEDVPEVSHLTRATMILSGYIIRAVDDH---TCELTVIAHIDLGGLLPATVINLL 267          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19778.5903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K079_9PHAE1.880e-5764.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ0_ECTSI3.220e-5763.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A418AMN5_9STRA1.920e-1746.15Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2V6S8_9STRA3.890e-1738.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024TBS2_9STRA9.490e-1745.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067C6Z9_SAPPC2.620e-1536.28START domain-containing protein n=2 Tax=Saprolegni... [more]
A0A6G0WE54_9STRA3.740e-1540.17START domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A1V9YKF4_9STRA3.200e-1438.46START domain-containing protein n=1 Tax=Achlya hyp... [more]
T0RYD8_SAPDV1.400e-1334.78START domain-containing protein n=2 Tax=Saprolegni... [more]
A0A6G0WBH1_9STRA2.650e-1344.33START domain-containing protein n=1 Tax=Aphanomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19778contigL-elsbetiae_contig19778:1263..2468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.5e-45
Seed eggNOG ortholog2880.D7FSJ0
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons2
Model size351
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19778.5903.1prot_L-elsbetiae_contig19778.5903.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19778 1263..2456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.8369195-CDS-L-elsbetiae_contig19778:1262..13521622815818.8369195-CDS-L-elsbetiae_contig19778:1262..1352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19778 1263..1352 -
1691683123.180553-CDS-L-elsbetiae_contig19778:1262..13521691683123.180553-CDS-L-elsbetiae_contig19778:1262..1352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19778 1263..1352 -
1622815818.8544676-CDS-L-elsbetiae_contig19778:2207..24561622815818.8544676-CDS-L-elsbetiae_contig19778:2207..2456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19778 2208..2456 -
1691683123.1916137-CDS-L-elsbetiae_contig19778:2207..24561691683123.1916137-CDS-L-elsbetiae_contig19778:2207..2456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19778 2208..2456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.8641548-UTR-L-elsbetiae_contig19778:2456..24681622815818.8641548-UTR-L-elsbetiae_contig19778:2456..2468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19778 2457..2468 -
1691683123.2000701-UTR-L-elsbetiae_contig19778:2456..24681691683123.2000701-UTR-L-elsbetiae_contig19778:2456..2468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19778 2457..2468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19778.5903.1

>prot_L-elsbetiae_contig19778.5903.1 ID=prot_L-elsbetiae_contig19778.5903.1|Name=mRNA_L-elsbetiae_contig19778.5903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MFDRYELVERPNDHTSVRWTSYCAIWPTRPRDFVIRSTWEEFADGTIVIA
TRSVEHEDYPETPTFVRGKMVRVGWAHEMEREELRPSSEFTMYAHTDLGG
VLPASVINKLCKK
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mRNA from alignment at L-elsbetiae_contig19778:1263..2468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19778.5903.1 ID=mRNA_L-elsbetiae_contig19778.5903.1|Name=mRNA_L-elsbetiae_contig19778.5903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig19778:1263..2468- (Laminarionema elsbetiae ELsaHSoW15)
GAGTACGACCGGATGTTCGACCGGTACGAGCTGGTGGAGCGACCCAACGA CCACACCTCCGTGCGGTGGACCTCGTACTGTGCCATCTGGCCGACGCGGC CTCGAGACTTCGTGATCCGCAGCACGTGGGAGGAGTTCGCAGACGGCACC ATCGTCATCGCGACCCGCTCGGTGGAGCACGAAGATTACCCCGAGACTCC GACCTTCGTCCGGGGGAAGATGGTGAGGGTGGGCTGGGCGCACGAGATGG AACGGGAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGCGACGGAGAGAGAGAGAAAGAGAGAGGGA GGGAGGGAGAGAGAGACAGAGACAGGGAGACAGAAGGAGATATAGGGTGG GAGGATACTACTACCGTAGACCGGCGGCGAGACTCAACGGGGGGAAGAAA GGAACGGACCGGCGTGGAAGCGGCGGAGGCGGACTGAGGAGGCGGAGGAG AGAGGGGAGGGAAGTGACCGTGCTCGCTCGGCTGTTACATACGCGCGGTT TTTGTATCGTCTCTTTGGTGCCGTCTATAAAACCCCCGCCCCCACCCTCG CGAATCACAAACATGTAACCCGCAATCAGCATCGTGAGGCGGTTTTCATG CTGCAGCCTTTCCCCTCCGGCAGCAGATGGGGTTCTGCACGCCCCTCGCC CCCCATTTCACCGTGTTCCCACGTCTCCCGCGTCTCCCCTGGTCCCCCAC CCCCCTCCCTCGTCCTGCTCTCCACCCCCCACCCCCTCTTCTGGCGAAAC GCTCCAAAAACCAGGTTACCTGCGGCTACGTTATCTGCCCCCTGGGCGAA AGCCGACGGCAGCGGCGCGGCGGCAAGTCGACCAAGTCGGCAGCCGCCGG ATTGTCGCCCACCGCCTCCGCCGGCGACGGCGACGGCGACGCCGCCACCG CCGCAGCTGCAGCCGCAGCCGCCGCAGCCGCAGCCGCCGCCGGTGCCGCC GGGTCGATGAGCTCTGCTGCCGCGGCGACGGCGGCGGCGGCGGGGGCCGG GTCGAGGTCGATGGAGCTGCGGCCGAGCAGCGAGTTCACCATGTACGCGC ACACGGACCTCGGGGGCGTCCTACCGGCGAGCGTGATCAACAAGCTGTGC AAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19778:1263..2468-

>mRNA_L-elsbetiae_contig19778.5903.1 ID=mRNA_L-elsbetiae_contig19778.5903.1|Name=mRNA_L-elsbetiae_contig19778.5903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig19778:1263..2468- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGACCGGTACGAGCTGGTGGAGCGACCCAACGACCACACCTCCGT
GCGGTGGACCTCGTACTGTGCCATCTGGCCGACGCGGCCTCGAGACTTCG
TGATCCGCAGCACGTGGGAGGAGTTCGCAGACGGCACCATCGTCATCGCG
ACCCGCTCGGTGGAGCACGAAGATTACCCCGAGACTCCGACCTTCGTCCG
GGGGAAGATGGTGAGGGTGGGCTGGGCGCACGAGATGGAACGGGAGGAGA
TGTTCGACCGGTACGAGCTGGTGGAGCGACCCAACGACCACACCTCCGTG
CGGTGGACCTCGTACTGTGCCATCTGGCCGACGCGGCCTCGAGACTTCGT
GATCCGCAGCACGTGGGAGGAGTTCGCAGACGGCACCATCGTCATCGCGA
CCCGCTCGGTGGAGCACGAAGATTACCCCGAGACTCCGACCTTCGTCCGG
GGGAAGATGGTGAGGGTGGGCTGGGCGCACGAGATGGAACGGGAGGAGCT
GCGGCCGAGCAGCGAGTTCACCATGTACGCGCACACGGACCTCGGGGGCG
TCCTACCGGCGAGCGTGATCAACAAGCTGTGCAAGAAGCTGCGGCCGAGC
AGCGAGTTCACCATGTACGCGCACACGGACCTCGGGGGCGTCCTACCGGC
GAGCGTGATCAACAAGCTGTGCAAGAAG
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