mRNA_L-elsbetiae_contig19761.5899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19761.5899.1
Unique NamemRNA_L-elsbetiae_contig19761.5899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19761.5899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19761contigL-elsbetiae_contig19761:2041..2447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size407
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.4036808-UTR-L-elsbetiae_contig19761:2040..21231622815818.4036808-UTR-L-elsbetiae_contig19761:2040..2123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19761 2041..2123 +
1691683122.8354483-UTR-L-elsbetiae_contig19761:2040..21231691683122.8354483-UTR-L-elsbetiae_contig19761:2040..2123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19761 2041..2123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.4175127-CDS-L-elsbetiae_contig19761:2123..24471622815818.4175127-CDS-L-elsbetiae_contig19761:2123..2447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19761 2124..2447 +
1691683122.8460615-CDS-L-elsbetiae_contig19761:2123..24471691683122.8460615-CDS-L-elsbetiae_contig19761:2123..2447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19761 2124..2447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19761.5899.1prot_L-elsbetiae_contig19761.5899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19761 2124..2447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19761.5899.1

>prot_L-elsbetiae_contig19761.5899.1 ID=prot_L-elsbetiae_contig19761.5899.1|Name=mRNA_L-elsbetiae_contig19761.5899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MMGWRCLLGGTTPPRCLRTSKHLLAAANLLLRQFTTFTMRETRAKPNNKK
RAAQTTTLHTLLPTITSKVLRDIISSVQACPKVEGKLGKMATRATPLEHR
IYPSSIL*
back to top

mRNA from alignment at L-elsbetiae_contig19761:2041..2447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19761.5899.1 ID=mRNA_L-elsbetiae_contig19761.5899.1|Name=mRNA_L-elsbetiae_contig19761.5899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=407bp|location=Sequence derived from alignment at L-elsbetiae_contig19761:2041..2447+ (Laminarionema elsbetiae ELsaHSoW15)
GAAACATTTAGGTTAATTCAAGTTTGGTCAATCAATGTAGCCTGTGCATA
GTAGTCCAATGTAGATGCAGTCAGAAATAGTCGATGATGGGCTGGCGATG
CTTGCTTGGGGGCACAACACCCCCTCGTTGCCTCAGAACTTCTAAACATC
TGCTTGCTGCTGCCAACTTACTTCTGCGACAATTTACAACCTTCACGATG
CGCGAAACAAGGGCGAAACCAAATAACAAAAAACGCGCAGCACAAACAAC
AACTTTACATACTCTGCTTCCAACAATCACTTCCAAGGTTCTTCGAGACA
TCATATCATCAGTCCAAGCTTGCCCCAAAGTTGAGGGGAAATTGGGGAAA
ATGGCAACACGTGCAACACCCCTTGAACACCGTATCTATCCGTCGTCAAT
ACTTTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19761:2041..2447+

>mRNA_L-elsbetiae_contig19761.5899.1 ID=mRNA_L-elsbetiae_contig19761.5899.1|Name=mRNA_L-elsbetiae_contig19761.5899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig19761:2041..2447+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGCTGGCGATGCTTGCTTGGGGGCACAACACCCCCTCGTTGCCT
CAGAACTTCTAAACATCTGCTTGCTGCTGCCAACTTACTTCTGCGACAAT
TTACAACCTTCACGATGCGCGAAACAAGGGCGAAACCAAATAACAAAAAA
CGCGCAGCACAAACAACAACTTTACATACTCTGCTTCCAACAATCACTTC
CAAGGTTCTTCGAGACATCATATCATCAGTCCAAGCTTGCCCCAAAGTTG
AGGGGAAATTGGGGAAAATGGCAACACGTGCAACACCCCTTGAACACCGT
ATCTATCCGTCGTCAATACTTTAAATGATGGGCTGGCGATGCTTGCTTGG
GGGCACAACACCCCCTCGTTGCCTCAGAACTTCTAAACATCTGCTTGCTG
CTGCCAACTTACTTCTGCGACAATTTACAACCTTCACGATGCGCGAAACA
AGGGCGAAACCAAATAACAAAAAACGCGCAGCACAAACAACAACTTTACA
TACTCTGCTTCCAACAATCACTTCCAAGGTTCTTCGAGACATCATATCAT
CAGTCCAAGCTTGCCCCAAAGTTGAGGGGAAATTGGGGAAAATGGCAACA
CGTGCAACACCCCTTGAACACCGTATCTATCCGTCGTCAATACTTTAA
back to top