mRNA_L-elsbetiae_contig19697.5879.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19697.5879.1
Unique NamemRNA_L-elsbetiae_contig19697.5879.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19697.5879.1 vs. uniprot
Match: D7G5G3_ECTSI (Monooxygenase FAD-binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.870e-42
Identity = 101/162 (62.35%), Postives = 114/162 (70.37%), Query Frame = 2 
Query:    8 SARQLDPVLAQGAGVALEDAFFLARHVRDLNAAAAAAGGPTAGTVGEGGRAARERLERALARYDQDRLDRALLLSGLSDVSQVLGQLQRPEWLVRARDSFLARCVPSALRSRAFDALMASSLAGGAAGAVTAAAEAATGRRVPGSGGRGQGRGRFGGYGVPR 493
            SA  LDPVLAQGAGVALEDAFFLA+H++D N          A T GE G    +RLE AL+RYD++RL RALLLS LSDVSQ LGQL+RPEWLVRARDS LAR +P+AL SR FD LMA+SLAGG AG   AA  AA G         G+ R RFGGY VP+
Sbjct:  220 SAHTLDPVLAQGAGVALEDAFFLAQHLKDFNGRQNKKS--AAVTAGEAG----DRLEEALSRYDEERLQRALLLSVLSDVSQALGQLRRPEWLVRARDSTLARYIPAALSSRIFDGLMAASLAGGLAGGARAATAAAVGF--------GEKR-RFGGYRVPK 366
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BLAST of mRNA_L-elsbetiae_contig19697.5879.1 vs. uniprot
Match: A0A6H5KFE1_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE1_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.260e-38
Identity = 97/162 (59.88%), Postives = 111/162 (68.52%), Query Frame = 2 
Query:    8 SARQLDPVLAQGAGVALEDAFFLARHVRDLNAAAAAAGGPTAGTVGEGGRAARERLERALARYDQDRLDRALLLSGLSDVSQVLGQLQRPEWLVRARDSFLARCVPSALRSRAFDALMASSLAGGAAGAVTAAAEAATGRRVPGSGGRGQGRGRFGGYGVPR 493
            +A  LDPVLAQGAGVALEDAFFLA+H++D N          A T GE G    +RLE AL+RYD++RL RALLLS LSDVSQ LGQL+RPEWLVRARDS LAR +P+AL SR FD LM +SLAGG AG   AAA AA G            + RF GY VP+
Sbjct:  519 AAHTLDPVLAQGAGVALEDAFFLAQHLKDFNDRQNKKS--AAVTAGEAG----DRLEEALSRYDEERLQRALLLSVLSDVSQGLGQLRRPEWLVRARDSTLARYIPAALSSRVFDGLMEASLAGGLAGGARAAAAAAVGFGE---------KWRFDGYRVPK 665
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19697.5879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5G3_ECTSI1.870e-4262.35Monooxygenase FAD-binding n=1 Tax=Ectocarpus silic... [more]
A0A6H5KFE1_9PHAE2.260e-3859.88FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19697contigL-elsbetiae_contig19697:103..1603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.1947968-CDS-L-elsbetiae_contig19697:103..3821622815816.1947968-CDS-L-elsbetiae_contig19697:103..382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19697 104..382 -
1691683121.3034265-CDS-L-elsbetiae_contig19697:103..3821691683121.3034265-CDS-L-elsbetiae_contig19697:103..382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19697 104..382 -
1622815816.2064133-CDS-L-elsbetiae_contig19697:1387..16031622815816.2064133-CDS-L-elsbetiae_contig19697:1387..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19697 1388..1603 -
1691683121.3142157-CDS-L-elsbetiae_contig19697:1387..16031691683121.3142157-CDS-L-elsbetiae_contig19697:1387..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19697 1388..1603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19697.5879.1prot_L-elsbetiae_contig19697.5879.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19697 104..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19697.5879.1

>prot_L-elsbetiae_contig19697.5879.1 ID=prot_L-elsbetiae_contig19697.5879.1|Name=mRNA_L-elsbetiae_contig19697.5879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
RWLGSPARPRPRPGCRRGPGRRIFSRPTRERLERRGSGSGRAHSGDGGRG
GEGCKGKARAGAGALRPGPAGQGALAVRPLRRFPGPGAASAPGVARQGAR
FVPRPLRPVGTSIEGFRRPHGVVSSRRGGRGRDGGGGSGDGEAGAWKRRA
RAGAGAVRGLRGAEA
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mRNA from alignment at L-elsbetiae_contig19697:103..1603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19697.5879.1 ID=mRNA_L-elsbetiae_contig19697.5879.1|Name=mRNA_L-elsbetiae_contig19697.5879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1501bp|location=Sequence derived from alignment at L-elsbetiae_contig19697:103..1603- (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGCTCGGCTCGCCAGCTCGACCCCGTCCTCGCCCAGGGTGCCGGCG
TGGCCCTGGAAGACGCATTTTTTCTCGCCCGACACGTGAGAGACTTGAAC
GCCGCGGCAGCGGCAGCGGGAGGGCCCACAGCGGGGACGGTGGGAGAGGG
GGGGAGGGCTGCAAGGGAAAGGCTAGAGCGGGCGCTGGCGCGCTACGACC
AGGACCGGCTGGACAGGTGAGGGGCTCCGCAGTTCGCACAGAGTACCAAG
GGGGGGGTGGGGTCGACGCCTGCTGTGTGCGAGACGCTGCATGTACCCGT
TGGGACGTGTGGTGGAGAGATACTGGCTGGATGACGGGTGCTGGGGAGGG
GCGCGCCGCGTTTGAGCTTGAATTGCGCCCCTCCTGATTTGTCGCCGGGG
GAGGTAGGTATCTATGCAGTAGTCTACGCAGGGTTTCCATACTTTATCTC
AGCTAACATATGAGATAAAGCATGGAAACCGGGAAAGGGGGGTCGTTGGT
TGGGGTTAGGGTTAGGGTGATTTTCCTATATAAAGCTTGATTTCCGGCGT
AGGCGGTCCTTGTAGATCAGAAGTTACGGTTAGGGTTTAGGGGGTGAGGG
TTGGGGTTGTCCGCCCTCGTGTCTTGGTTTGGTTTTCTCCTGGCAGAACC
TCGGGCGCACGAAGGACAGCAGTAGTGGAGAAACCACTCGAATATTGAAC
TCACGTTTGTTTCTCTTTTCTTTCTCCTCTGACACAAAAGGCGGGGGCAC
CGTCTATCTGTCTCGTGTTCCTGCCTCCGCCCCACCCCCCCCCTGCCGCT
GCCGTTTCAAAGATATGTACATGCCATTTTGCCGGGCTCTCTTTCCGCCA
TTACCACCACCACCACCGCCATCACTGCCACCACTCCGCCTAACTCTCGT
TTTTCTCGTGCACATAGATACACATACCGTAGGTGACATAATATACCACA
CCCCCTGGACCGAATTATGGAGCTCCATTATTCCGTAACGAAGAAGGTTC
CAGCACCCAACGCTATACTCTCGGACAGCGCTCGACTAGATCTTTCCAAC
GCCACCCCGTTCGGCACGGGCGCTCTTTTTGCTGGGAAGAGATCGAGCTT
TGAAAATATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACAGTACTACA
TGCATTCTGTACCGTCCGATTCGTGCTTAAATAATAATACGCTTTTTGTT
TTTTTATCCTCTCGCTTCCAGGGCGCTCTTGCTGTCCGGCCTCTCCGACG
TTTCCCAGGTCCTGGGGCAGCTTCAGCGCCCGGAGTGGCTCGTCAGGGCG
CGCGATTCGTTCCTCGCCCGCTGCGTCCCGTCGGCACTTCGATCGAGGGC
TTTCGACGCCCTCATGGCGTCGTCTCTAGCAGGAGGGGCGGCCGGGGCCG
TGACGGCGGCGGCGGAAGCGGCGACGGGGAGGCGGGTGCCTGGAAGCGGC
GGGCGAGGGCAGGGGCGGGGGCGGTTCGGGGGCTACGGGGTGCCGAGGCT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19697:103..1603-

>mRNA_L-elsbetiae_contig19697.5879.1 ID=mRNA_L-elsbetiae_contig19697.5879.1|Name=mRNA_L-elsbetiae_contig19697.5879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig19697:103..1603- (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGCTCGGCTCGCCAGCTCGACCCCGTCCTCGCCCAGGGTGCCGGCG
TGGCCCTGGAAGACGCATTTTTTCTCGCCCGACACGTGAGAGACTTGAAC
GCCGCGGCAGCGGCAGCGGGAGGGCCCACAGCGGGGACGGTGGGAGAGGG
GGGGAGGGCTGCAAGGGAAAGGCTAGAGCGGGCGCTGGCGCGCTACGACC
AGGACCGGCTGGACAGCGCTGGCTCGGCTCGCCAGCTCGACCCCGTCCTC
GCCCAGGGTGCCGGCGTGGCCCTGGAAGACGCATTTTTTCTCGCCCGACA
CGTGAGAGACTTGAACGCCGCGGCAGCGGCAGCGGGAGGGCCCACAGCGG
GGACGGTGGGAGAGGGGGGGAGGGCTGCAAGGGAAAGGCTAGAGCGGGCG
CTGGCGCGCTACGACCAGGACCGGCTGGACAGGGCGCTCTTGCTGTCCGG
CCTCTCCGACGTTTCCCAGGTCCTGGGGCAGCTTCAGCGCCCGGAGTGGC
TCGTCAGGGCGCGCGATTCGTTCCTCGCCCGCTGCGTCCCGTCGGCACTT
CGATCGAGGGCTTTCGACGCCCTCATGGCGTCGTCTCTAGCAGGAGGGGC
GGCCGGGGCCGTGACGGCGGCGGCGGAAGCGGCGACGGGGAGGCGGGTGC
CTGGAAGCGGCGGGCGAGGGCAGGGGCGGGGGCGGTTCGGGGGCTACGGG
GTGCCGAGGCTGGCGCTCTTGCTGTCCGGCCTCTCCGACGTTTCCCAGGT
CCTGGGGCAGCTTCAGCGCCCGGAGTGGCTCGTCAGGGCGCGCGATTCGT
TCCTCGCCCGCTGCGTCCCGTCGGCACTTCGATCGAGGGCTTTCGACGCC
CTCATGGCGTCGTCTCTAGCAGGAGGGGCGGCCGGGGCCGTGACGGCGGC
GGCGGAAGCGGCGACGGGGAGGCGGGTGCCTGGAAGCGGCGGGCGAGGGC
AGGGGCGGGGGCGGTTCGGGGGCTACGGGGTGCCGAGGCT
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