mRNA_L-elsbetiae_contig1964.5853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1964.5853.1
Unique NamemRNA_L-elsbetiae_contig1964.5853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1964.5853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1964contigL-elsbetiae_contig1964:6547..8472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1964.5853.1prot_L-elsbetiae_contig1964.5853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1964 6547..8470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.3387337-CDS-L-elsbetiae_contig1964:6546..66241622815814.3387337-CDS-L-elsbetiae_contig1964:6546..6624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 6547..6624 +
1691683120.178009-CDS-L-elsbetiae_contig1964:6546..66241691683120.178009-CDS-L-elsbetiae_contig1964:6546..6624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 6547..6624 +
1622815814.349204-CDS-L-elsbetiae_contig1964:7384..75281622815814.349204-CDS-L-elsbetiae_contig1964:7384..7528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 7385..7528 +
1691683120.1875324-CDS-L-elsbetiae_contig1964:7384..75281691683120.1875324-CDS-L-elsbetiae_contig1964:7384..7528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 7385..7528 +
1622815814.3590198-CDS-L-elsbetiae_contig1964:8371..84701622815814.3590198-CDS-L-elsbetiae_contig1964:8371..8470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 8372..8470 +
1691683120.1974823-CDS-L-elsbetiae_contig1964:8371..84701691683120.1974823-CDS-L-elsbetiae_contig1964:8371..8470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 8372..8470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1964.5853.1

>prot_L-elsbetiae_contig1964.5853.1 ID=prot_L-elsbetiae_contig1964.5853.1|Name=mRNA_L-elsbetiae_contig1964.5853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
DARRLVETGTVAPTRSSTRSSCKKKTTCVSTSCWFHETKLYTSCTCDPDG
ERERTDGPTWWVEDPYCEYWSCNQGTEALPLDGGPLNLNGTQSYVVSDHE
LNYACSE
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mRNA from alignment at L-elsbetiae_contig1964:6547..8472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1964.5853.1 ID=mRNA_L-elsbetiae_contig1964.5853.1|Name=mRNA_L-elsbetiae_contig1964.5853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig1964:6547..8472+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCCAGACGCTTGGTTGAAACGGGAACGGTAGCTCCCACACGCTCATC
CACGCGCTCATCGTGCAAGAAGAAAACGGTACGTTTCAAGGCATTCTTCT
GGTTCAGTAGGAGTTGCCTTGCCATGCATGTCTACCTCCACCAAAATCGC
GCGCCGCATGTCTGCTGCGATTGGATCGAGCTTACATGGCCTTGACGGCA
TACATCATGTAGTACAGATAGCGTAACATACAAAGGGGCCTGCCTTAAGC
GCGCACGACATGCTGCAAGAAACTCCCCCCACGGAACCCGTGAACGCACC
GCACAGATGGAACTCGACCGGCCGATTATATACTACAGCTTGCTCCCCCC
GGCGGGTTCCACCGATGCCATGGGAGCCATGTCACCGTCAAGACGCGAAC
CGATGGTGCATTGTGCGGCCTAACCCTCCTTTCTTAAACAAGCCCGAGGG
TCATTAGTATATGCTGCAGTGACAACCGCAACACGTGTGGTAGCCAATAC
TGCTCTGACATTCCCGGGGCGTTTCTACCGAACGATCTGCTCGGTCAGTC
TTGTGTTGAGAAAAGCGTCATATACACACGGCGGTGTCTCGCGTTTGCTG
GGGTAGATAAACCTCTAACCATAGACCTGCTGAAGACATGCGTTGCTGTA
TTGTTGCGTCGGACTCCATAGACTATAGGGGAAGGCCAGCAAAAGTTAAG
GACACCAAACAAAACCTAAGGCGAGTTTGTAGATGCTCGCGGGGATAAAG
TTCAGAGGAATCAAATTTGGTGTACTCGACTCGTAACATGCCCTTAGCAC
CTTGTCTTAATCGCTACACTACATCGCTATGCCTCAAGACATGCGTGTCA
ACCAGTTGCTGGTTTCACGAGACAAAGCTGTACACCTCGTGTACCTGTGA
CCCTGACGGAGAGAGAGAACGGACAGACGGTCCCACGTGGTGGGTCGAGG
ACCCGTACTGCGAGTATTGGAGTTGCAATCAGGTGAGCGTAAGGGAACGA
GTCTGTCTATCTATGCACCATTAAGCAGCTGCAGTCTAGGGCAAACTTTT
CTTTTCGCAACATTATTACGGTCTGCCGGACCCCGTCGCCTCGATTTGAT
GTCACCTGGCGTATATGGTTTGGAAAAACTGGGCTTTCCTTTCAACTCGC
ATCTGTCGAGTAGCAAGTTGGAGACGTTTTTGTACGCATGCATGTAACAC
CAACCATTCTCGCTCCCAAAGCAACCTTCAAGATTTGCAGAGTCCCGAAT
ATCCAACATTAGTCTGGGGATGGGCGAAGGTGGTTGACATCTAGAAGCAA
TATGTTTCAAATGTGAGCTCGATAAAGCGCTGAAACGGTCTTCGATAAGC
AAACTCGCTTGTATCAGGAACCTGCTCGCCAAGCAATCCATTTTCCAGTT
TTAAAATCGAAGATTGTGCGGCATCATTATTTGCGCAGAAAACGCTGTAC
TCTAGATGATAAAAAAATGTCTTTCTCCGCCGTAGAAAATGCTGCTCGTT
GCTGTAACGTGCATACTCCGTGTATCATTTTTCGCTTATGATCGGCATCA
TTTGCGCGGGCGCAATCGTAGCTTCGAAGATAGTTCATGTCCTCCATATG
CTATAGTAGAAAACTGATGCTTACACAATAGATATAATCTTGCAGAAACG
CAAGAAACCTGTACTCGCCGGCGTATTTAGATAGTGCTCTTAGGAAGCAA
GTTACACGAGCCGACAACGCATGGCCACCTTTATTGAAGGGTATCAGGCG
GAGTGTACAGCAAACCTGTGACTTGTAGTCTTGGCCGAAATGTCGCACTT
TTCGACGCCCCCGCTACCGTTTTAGGGAACGGAAGCACTCCCACTGGATG
GTGGTCCGTTGAACTTAAACGGGACCCAAAGCTACGTCGTCTCGGACCAC
GAGCTGAACTATGCGTGCTCAGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1964:6547..8472+

>mRNA_L-elsbetiae_contig1964.5853.1 ID=mRNA_L-elsbetiae_contig1964.5853.1|Name=mRNA_L-elsbetiae_contig1964.5853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1964:6547..8472+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCCAGACGCTTGGTTGAAACGGGAACGGTAGCTCCCACACGCTCATC
CACGCGCTCATCGTGCAAGAAGAAAACGGATGCCAGACGCTTGGTTGAAA
CGGGAACGGTAGCTCCCACACGCTCATCCACGCGCTCATCGTGCAAGAAG
AAAACGACATGCGTGTCAACCAGTTGCTGGTTTCACGAGACAAAGCTGTA
CACCTCGTGTACCTGTGACCCTGACGGAGAGAGAGAACGGACAGACGGTC
CCACGTGGTGGGTCGAGGACCCGTACTGCGAGTATTGGAGTTGCAATCAG
ACATGCGTGTCAACCAGTTGCTGGTTTCACGAGACAAAGCTGTACACCTC
GTGTACCTGTGACCCTGACGGAGAGAGAGAACGGACAGACGGTCCCACGT
GGTGGGTCGAGGACCCGTACTGCGAGTATTGGAGTTGCAATCAGGGAACG
GAAGCACTCCCACTGGATGGTGGTCCGTTGAACTTAAACGGGACCCAAAG
CTACGTCGTCTCGGACCACGAGCTGAACTATGCGTGCTCAGAGGGAACGG
AAGCACTCCCACTGGATGGTGGTCCGTTGAACTTAAACGGGACCCAAAGC
TACGTCGTCTCGGACCACGAGCTGAACTATGCGTGCTCAGAG
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