mRNA_L-elsbetiae_contig1964.5852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1964.5852.1
Unique NamemRNA_L-elsbetiae_contig1964.5852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1964.5852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1964contigL-elsbetiae_contig1964:4681..6503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.1932647-CDS-L-elsbetiae_contig1964:4680..47941622815814.1932647-CDS-L-elsbetiae_contig1964:4680..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 4681..4794 +
1691683120.1012578-CDS-L-elsbetiae_contig1964:4680..47941691683120.1012578-CDS-L-elsbetiae_contig1964:4680..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 4681..4794 +
1622815814.211564-CDS-L-elsbetiae_contig1964:6291..65011622815814.211564-CDS-L-elsbetiae_contig1964:6291..6501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 6292..6501 +
1691683120.113182-CDS-L-elsbetiae_contig1964:6291..65011691683120.113182-CDS-L-elsbetiae_contig1964:6291..6501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1964 6292..6501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1964.5852.1prot_L-elsbetiae_contig1964.5852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1964 4681..6501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1964.5852.1

>prot_L-elsbetiae_contig1964.5852.1 ID=prot_L-elsbetiae_contig1964.5852.1|Name=mRNA_L-elsbetiae_contig1964.5852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GIENGTSTLDSRNDSEVLYPGGAHACSSWACDETRYTKACKCTEYKTTTT
CTPTPTPTPTPTPTPTRTPTPPTPTPNNNNGDDDDGDADYDDDDARRLVE
TSEAVAST
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mRNA from alignment at L-elsbetiae_contig1964:4681..6503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1964.5852.1 ID=mRNA_L-elsbetiae_contig1964.5852.1|Name=mRNA_L-elsbetiae_contig1964.5852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1823bp|location=Sequence derived from alignment at L-elsbetiae_contig1964:4681..6503+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATAGAAAACGGGACTTCGACCTTGGACTCGCGCAACGATTCTGAAGT
CTTGTATCCTGGCGGGGCCCACGCTTGTTCGTCTTGGGCGTGCGACGAGA
CCCGATACACTAAGGTAGTGGACAGGCAGGTGTAGTTCTTTTAGAAATTA
ATATTCATCTGAAATCGTTCAATTTCCACGGCTGGCTCTAGAAGCCTCGG
AGAGCCGGATTTGATCTCGCCTTAGAGAGCAGCTTAACTCGCTCGATAAG
GGCTGCACCGCTTCCCACCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCT
CTCTCTCTTCTTGTCTTTTTTTTTCCCGCCCATCATTGGCATATTTGTCG
TCTGCCCCACTGGCCACCTTCCTCCACCACAACTATATATTGCTAGACGA
CCCGACCGGGGTCACACAGAAGGCCCCCCCCTGCGGTGCCTGCCTTTGAT
ATGTTTATCGCGAGCAGGGTTCAGCAATCCTCACCCCCGTCAACAATGAA
GTCGAAGTAATATTTACTAACGAAATCGCTTTCAATTTTTCAGGAACGCA
TGTGGGAAAAAAACTCGCTTCGCAGGGACTCGAACCCAGGACCTGGTTCT
TAGAAGGTTGCGGGGATACCAAGTAGACCACCGGGCTACCGGCGCATAAA
GGACCCTATAACCACCCCCAACTGCTACCTACAACCCCCCGCAGTCACCA
TATGTATCTCTTTCTCGCGGTCTCTCTCTCTTTTCACGCTCTGTGGGCAT
GCAGAGCAGCCGCAATTGTTTTGGAATTGCGGCTCTTGCTTGAAAACTCG
CCTCGCCCAAGGGTTACGCCCAAATCGTCGACGCGCGAGCCGTTGTCCGT
GCCACTGGAGCCGCAATATGTTGGTGCCACTGCCCTCGTAGGTGTTCCGA
TATTCTCACAAAGCACTTTACGCACACATGTATGTGTACTGTTGTGCACA
CACGGGTGCATTCGCGGCAGCTTCGTCAAATACAAAGAGGGTTCTGCTTG
CACATCCTTTATTACTATTTAGTAGGTACTAGCCTCCCTGCCGGCATGTG
TTTTTCGGAACTATAGCCTATATTCTGTATTCAAAAAGCAACTGTCGCTT
TGTGTTTACATCGCCACACACACACCTAGACTACTGCACAACAAATCTTC
GACAACAGCAGCACTTCATAGACCGTAGATATGTATCATTACCTTGGAAT
CGCTTCGAATAAGCGAGGCCACGTGAGCAGCCAGACCTTTTAGTTCATAC
CGAATAATATTCCTTCTGCGGCGCGTGACCGAAAATAGTGCTGCGAACGC
AGGATATAGTCTAGTAATAAACGTAGCCGAGCGAGGGGCCTCATACATTG
TGCGATCGAGAGCACCGAAGGAAACCACATTTTACATAATTAGACTATTA
TAGATAATCCCTGGACGCTCATGTAGAGTTCACGGATCTCAGACTTAAAA
CGCTTGGGTTCCACTGTCTTCACCCTAAATCATTGAAATATTGTACATAC
AGCGCAATGCTCGCGAGAAGACCACTGATTCAGAAATTTTAGGTATGTGG
CCCTTGACAGCAGGTGTCCAGCTGAACATGAGTAATGCCATGCGCTTTCG
TGAATGTTCAGGCTTGCAAGTGCACAGAGTACAAGACGACGACCACCTGT
ACCCCGACTCCGACTCCGACTCCTACTCCTACTCCTACTCCCACTCGTAC
TCCTACGCCTCCTACTCCGACACCGAACAATAACAACGGCGATGATGACG
ATGGCGATGCCGACTACGATGACGATGATGCCAGACGCTTGGTTGAAACG
AGCGAGGCAGTTGCTTCCACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1964:4681..6503+

>mRNA_L-elsbetiae_contig1964.5852.1 ID=mRNA_L-elsbetiae_contig1964.5852.1|Name=mRNA_L-elsbetiae_contig1964.5852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1964:4681..6503+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATAGAAAACGGGACTTCGACCTTGGACTCGCGCAACGATTCTGAAGT
CTTGTATCCTGGCGGGGCCCACGCTTGTTCGTCTTGGGCGTGCGACGAGA
CCCGATACACTAAGGGCATAGAAAACGGGACTTCGACCTTGGACTCGCGC
AACGATTCTGAAGTCTTGTATCCTGGCGGGGCCCACGCTTGTTCGTCTTG
GGCGTGCGACGAGACCCGATACACTAAGGCTTGCAAGTGCACAGAGTACA
AGACGACGACCACCTGTACCCCGACTCCGACTCCGACTCCTACTCCTACT
CCTACTCCCACTCGTACTCCTACGCCTCCTACTCCGACACCGAACAATAA
CAACGGCGATGATGACGATGGCGATGCCGACTACGATGACGATGATGCCA
GACGCTTGGTTGAAACGAGCGAGGCAGTTGCTTCCACGGCTTGCAAGTGC
ACAGAGTACAAGACGACGACCACCTGTACCCCGACTCCGACTCCGACTCC
TACTCCTACTCCTACTCCCACTCGTACTCCTACGCCTCCTACTCCGACAC
CGAACAATAACAACGGCGATGATGACGATGGCGATGCCGACTACGATGAC
GATGATGCCAGACGCTTGGTTGAAACGAGCGAGGCAGTTGCTTCCACG
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