mRNA_L-elsbetiae_contig1960.5843.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: D7FH07_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH07_ECTSI) HSP 1 Score: 808 bits (2086), Expect = 4.170e-279 Identity = 594/825 (72.00%), Postives = 636/825 (77.09%), Query Frame = 2 Query: 89 MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLLDRMSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTLEQET---------VVVAQLVATLCNLLAAVDVAVGRFTKQGGLQVVMRLLLPEGCRGSSDIFGGALQALHVATDSNEDFARQLASLPGGIEQISGLVRGADVAHVKVSASMRVQAAGVLVNVAGLSSGA--ARSAEAQTELSQLVLPLLLKRMVYDPTALGEACVALAADKRAAAAADMAADSADSSMDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGD---SAGAMNNNGGAVQGT--GEESNGAGAVEQPDKDAQLRWEWKLTVAEPLKLTAEVMANLCALAMGDAEXXXXXXXXXXXXXXXXXXXXXXXGCGAMGGAHQQATGGAHATVLLDAMADGGALQRTLTALRDLFSPTPGDRQAESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESESRLPLPSGVAGDLADLRATVALCAANLVQNLPPKALGESPHGLWSELCGMCEAAMERAPSCVETVSGVMWGLVRRAGPAVAAGVRANVASAAAAAGAT------EPAADPLSLIKRLCDPETTRAFEARVNGVGMLXXXXXXXXXXXXX------AGSAADVGLGRALVQAMEDPHVLVQAEALNAVMDVYSDDGQDAAFRASGAPAALAVGVPAFKRKVKQEGKVLGRDALCHLKETALNASRFAKYKKVS---GAAGGGK 2470 MD K GGVLDGLTSLNA+TRESSCAAIASLFEKVD PEAG +SW AAQRLIA GLVKKLLPRMVDR PGVK+QA GAMRNISAVRDPRMCE+LV DDCLTPVLTLLDRMS++ XXXXXXXXXXXXXXXXXXXXXXXXXXX VVVAQLVATLCNLLAAVDVAVGRFT+QGGLQVVMRLLL EGCRGSS++FGGALQALHVATDSNED +RQLA+ PG I+ IS LV+GADVAHVKVSASMRVQAAGVLVNVAGLSSGA ARSAE Q EL+++VLPLLLK+M YDPTAL +ACV LA +K+ A AA SA+SSMDV XXXXXXXXXXXXXXXXXX XXX G + G + N GA G E G V+QPD+DAQLRWEWKLTVAEPLKLTAEVM NLCALA GD EXXXXXXXXXXXXXXXXXXXXXXX A+ GA VLL+AMA+GGALQRTL L+ L +PTP DRQ E XXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ RL LP+GVAGDLADLRATVALCAANLVQNLP KALGE+PH LW+ELCGMCEAA ERAPSCVETV+GVMWGLVRRAGP VAAG RA + +ADPL LI RLCDP TRAFEARVN VGML AG D+GLGRALVQAMEDPHVLVQAEALNAVMDVY DDG DAAFRASGAPAALA GVPAF+RKVKQEGK LGRDA+CHLKETALNA RF KYK+ S AAGG K Sbjct: 1 MDAKAGGVLDGLTSLNALTRESSCAAIASLFEKVDGPEAGGESWAAAQRLIAGGLVKKLLPRMVDRVPGVKLQAIGAMRNISAVRDPRMCEVLVHDDCLTPVLTLLDRMSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVAQLVATLCNLLAAVDVAVGRFTRQGGLQVVMRLLLAEGCRGSSEVFGGALQALHVATDSNEDLSRQLAAQPGAIDHISALVQGADVAHVKVSASMRVQAAGVLVNVAGLSSGAEAARSAEDQAELTRVVLPLLLKQMAYDPTALQQACVTLALEKQPATPGP-AAGSAESSMDVDGEAGXXXXXXXXXXXXXXXXXXETTTTGXXXGATKGGGQEPAQGTESENDGAAGNDLEGGEKKEEGGVDQPDRDAQLRWEWKLTVAEPLKLTAEVMTNLCALASGDGEXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXASEGALTAVLLEAMAEGGALQRTLATLQALLAPTPRDRQREQPTAAIGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------NTDDRLALPAGVAGDLADLRATVALCAANLVQNLPAKALGENPHALWAELCGMCEAATERAPSCVETVTGVMWGLVRRAGPVVAAGFRAXXXXXXXXXXXXXXXXXPKRSADPLPLILRLCDPAVTRAFEARVNAVGMLGALGSAAAGAAVAGEGAAAAGGGTDLGLGRALVQAMEDPHVLVQAEALNAVMDVYGDDGLDAAFRASGAPAALAAGVPAFRRKVKQEGKALGRDAMCHLKETALNAGRFVKYKQASEGVSAAGGKK 812
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A835YUS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS0_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.650e-46 Identity = 257/815 (31.53%), Postives = 337/815 (41.35%), Query Frame = 2 Query: 101 EGGVLDGLTSLNAITRESSCAAIASLFEKVDSPE--------AGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLLDRMSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTLEQETVVVAQLVATLCNLLAAVDVAVGRFTKQGG--LQVVMRLLLPEGCRGSSDIFGGALQALHVATDSNEDFARQLASLPGGIEQISGLVRGADVAHVKVSASMRVQAAGVLVNVAGLSSGAARSAEAQTELSQLVL--------------------PLLLKRM-VYDPTALGEACVALAADKRAAAAADMAADSADSSMDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSAGAMNNNGGAVQGTGEESNGAGAVEQPDKDAQLRWEWKLTVAEPLKLTAEVMANLCALAMGDAEXXXXXXXXXXXXXXXXXXXXXXXGCGAMGGAHQQATGGAHATVLLDAMADGGALQRTLTALRDLFSPTPGDRQAESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESESRLPLPSGVAGDLADLRATVALCAANLVQNLPPKALGESPHGLWSELCGMCEAAMERAP--SCVETVSGVMWGLVRRAGPAVAAGVRANVASAAAAAGATEPAADPLSLIKRLCDPETTRAFEARVNGVGMLXXXXXXXXXXXXXAGSAADVGLGRALVQAMEDPHVLVQAEALNAVMDVYSDDGQDAA-FRASGAPAALAVGVPAFKRKVKQEGKVLGRDALCHLKETALNASRFAKYKK 2443 + G+LD L SL+ RESSC AIAS+F +D + A S +W AA++L+ GLVK+LL R+VD PGV++ A GA+RNISAV +P +CE +V D +T LT L+ + + E + QL+ L N+ VD AV FT GG + LL + S AL+ H AT+ N R L + P + ++ L+ PL+++ + YD E AA AD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+ +A+L W+ EP+ L AEV ANL ALA XXXX G ++ G ++ +L A+A+ L R + AL P XX +LA+LRA++A A+LV+ LP K LG+ W +C + + A A C+E ++G+MWGLVRR V + VA A AA +L++RL DP T A E RVN V ML A A L ALV+++ED H LVQA ALNA MDV+ D DAA F +G A+A +P FKRKVK EG GR+ALCHLKET+LNA+RF KY + Sbjct: 31 DAGLLDNLKSLDPFVRESSCVAIASVFAHLDYQQTAGGSKRPANSANWGAARQLLQRGLVKRLLQRLVDPVPGVRVHAAGALRNISAVGEPALCEAMVGDGVVTTALTQLEGVLREGSP--------------------------VAAEHAQAIALQLLLLLSNIFEHVDAAVDSFTDGGGRGAACIAALLTAQAIASSPLHLAAALRLAHTATEGNAALCRALQAAPAAADALAALMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLVVRGLGAYDARLTHEL----------AARADAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------XEEAKTEAELVEAWRDAAVEPVLLAAEVAANLAALAXXXXXXXXXGDCEWASDDEDGMEAEAATGGXXXXXXXGESEG---SSAILQALAEAQVLPRVIDALGAAALAPPXXXXXXXXXX---------------------------------------------------AELAELRASLAATGASLVEALPAKGLGDIG-ATWRGVCALVDRAAADAALHDCLEPLTGMMWGLVRR--------VPSEVAGAGDAASG--------ALLQRLVDPAQTGAAEVRVNAVAMLAALAGAA------AAGAGQADLAAALVRSLEDSHPLVQAAALNAAMDVWGSDSGDAAVFARAGLLGAIAAMLPDFKRKVKAEGSTHGREALCHLKETSLNAARFVKYMR 704
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: W2Q4E3_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2Q4E3_PHYPN) HSP 1 Score: 81.3 bits (199), Expect = 5.700e-12 Identity = 40/106 (37.74%), Postives = 66/106 (62.26%), Query Frame = 2 Query: 89 MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLL 406 M E + GL L RE++C AIA++F V+S EA + S QR++ +GL+KKL+PR+VD P V+ A GA+RN+S +CE++ + + +TP++ ++ Sbjct: 38 MAADEAQLFKGLVDLQGAVREATCVAIATMFGDVESDEAEATSRRKLQRMVDAGLLKKLIPRVVDPLPMVRQHALGALRNMSVTGGLELCELMTTQNVVTPLVKVI 143
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A3F2REG6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REG6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 7.520e-12 Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = 2 Query: 95 TKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLL 406 T E + GL L RE++C A+AS+F V+S EA + S QR++ +GL+ KL+PR+VD P V++ A GA+RN+S +CE++ + + +TP++ ++ Sbjct: 40 TDEAQLFKGLVDLQGSIREATCVALASMFGDVESDEAEAKSRKKLQRMVDAGLLNKLIPRVVDPLPMVRLHALGALRNMSVTGGLELCELMTNQNVVTPLVKII 143
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A2P4YLK3_9STRA (ARM repeat-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLK3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 9.800e-12 Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 89 MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLL 406 M E + GL L RE++C AIA++F +S EA + S QR++ +GL+KKL+PR+VD P V+ A GA+RN+S +CE++ + + +TP++ ++ Sbjct: 38 MAADEVQLFKGLVDLQGAVREATCVAIATMFGDAESDEAEARSRRKLQRMVDAGLLKKLIPRVVDPLPMVRQHALGALRNMSVTGGLELCELMTTQNVVTPLVKVI 143
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: H3H3F4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3F4_PHYRM) HSP 1 Score: 79.7 bits (195), Expect = 2.590e-11 Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 89 MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLL 406 M E + GL L RE++C AIA++F +S EA + S QR++ +GL+KKL+PR+VD P V+ A GA+RN+S +CE++ + + +TP++ ++ Sbjct: 38 MAADEAQLFKGLVDLQGAVREATCVAIATMFGDAESDEAEAASRRKLQRMVDAGLLKKLIPRVVDPLPMVRQHALGALRNMSVTGGLELCEVMTAQNVVTPLVKVI 143
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A484EH95_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EH95_BRELC) HSP 1 Score: 78.2 bits (191), Expect = 5.150e-11 Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 101 EGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLLDRMSS 421 E + GL L RE++C AIA++F V+ +A +S QR++ +GL+KKL+PR+VD P V+ A GA+RNIS +CE++ + +TP++ ++ S+ Sbjct: 42 EAQLFKGLVDLQGAVREATCVAIATMFGDVEDEKAEENSRRKLQRMVDAGLLKKLIPRVVDPLPMVRQFALGALRNISVTGGLELCELMTMQNVVTPLIRVITENST 148
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A662WHW5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHW5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 5.170e-11 Identity = 69/293 (23.55%), Postives = 132/293 (45.05%), Query Frame = 2 Query: 89 MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLLDRMSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTLEQETVVVAQLVATLCNLLAAVDVAVGRFTKQGGLQVVMRLLLPEGCRGSSDIFGGALQALHVATDSNEDFARQLASLPGGIEQISGLVRGADVAHVKVSASMRVQAAGVLVNVAGLSSGAARSAEAQTELSQLVLPLLLKRMVYDPTAL 967 M E + GL L RE++C A+A++F +S EA S QR++ +GL++KL+PR+VD P V++ A GA+RN+S +CE++ + + +TP++ ++ ++ Q V+ Q VA L NL + A+ T+ L ++++ R + + +L+ L + T+ N +L +Q+ G + A + S ++ A G+ +NV + + + +++LV P+L + YDP ++ Sbjct: 38 MPADEAQLFRGLLDLQGSIREATCVALATMFGDAESEEAEVRSRAKLQRMVDAGLLRKLVPRVVDPLPMVRLHALGALRNMSVTGGLELCEVMTTQNVITPLVKVISESATDATFAGSGDL------------------------QAVRVLEQAVALLGNLCESCQAAINELTQGQLLPPILKIAAQ--ARVHTALHLESLKLLLLITEGNARL-NELFGANAAYQQVIGDIIQAPTDQL--SLLTKLHAVGIAMNVRAIM-------QVEANVARLV-PVLEAALAYDPVSV 293
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A1V9ZID8_9STRA (HEAT repeat-containing protein 3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZID8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.660e-11 Identity = 80/294 (27.21%), Postives = 134/294 (45.58%), Query Frame = 2 Query: 113 LDGLTSLNAITRESSCAAIASLFEKVD--SPEAGSDSWTAAQRLIASGLVKKLLPRMVDRAPGVKMQATGAMRNISAVRDPRMCEILVSDDCLTPVLTLLDRMSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTLEQETV------VVAQLVATLCNLLAAVDVAVGRFTKQGGLQV-VMRLLLPEGCRGSSDIFGGALQALHVATDSNEDFARQLASLPGGIEQISGLVRGADVAHVKVSASMRVQAAGVLVNVAGLSSGAARSAEAQTELSQLVLPLLLKRMVYDPTAL 967 L GLTSL RE++C A+AS F D SPE Q+++ GL+KKLLPRMVD + V++ + GA+RNIS +CE + + D +TP + L+ S+ Q+TV ++ Q+ + L NL + +A+ + T Q L + + LP S + A++ L V D+N ++ +++ P + + L++ + H S ++R+ A GV +N+ + A A L+LP+L + YD A+ Sbjct: 44 LSGLTSLQGSVREATCVALASYFGGDDQMSPEKAK----LLQKMLNGGLLKKLLPRMVDHSKLVRLHSVGALRNISVAGGLDVCEYMTTQDVITPCVKLVGEYSTPEHLGA----------------------------QQTVDVHAFQILEQVFSLLANLSESSALALHQITVQRSLVLPALMRCLPVNAAPSMQL--EAVKLLLVLGDNNPEWNASISAEPAHQQTLLQLIQSPE--H---SLNLRLTAVGVAINLPHVLDNAQAIA--------LLLPVLKAAVAYDAVAV 290
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Match: A0A7S2V006_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V006_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.040e-11 Identity = 48/117 (41.03%), Postives = 60/117 (51.28%), Query Frame = 2 Query: 2090 EARVNGVGMLXXXXXXXXXXXXXAGSAADVGLGRALVQAMEDPHVLVQAEALNAVMDVYSDDGQDAAFRASGAPAALAVGVPAFKRKVKQEGKVLGRDALCHLKETALNASRFAKYK 2440 EAR N + ML G + + L++A+ D V+VQAEALNAVMDVY DD + AF L + FK KVK EG + R+ HLKET LN +RF YK Sbjct: 22 EARTNVLTMLGTLGQATPT----TGGPLEEAVAGLLLRAVGDAQVVVQAEALNAVMDVYCDDARHPAFLRHALLPRLRDCLRGFKAKVKSEGVQVDREVQLHLKETKLNIARFISYK 134 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1960.5843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1960.5843.1 >prot_L-elsbetiae_contig1960.5843.1 ID=prot_L-elsbetiae_contig1960.5843.1|Name=mRNA_L-elsbetiae_contig1960.5843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=798bp MDTKEGGVLDGLTSLNAITRESSCAAIASLFEKVDSPEAGSDSWTAAQRLback to top mRNA from alignment at L-elsbetiae_contig1960:17404..20727+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1960.5843.1 ID=mRNA_L-elsbetiae_contig1960.5843.1|Name=mRNA_L-elsbetiae_contig1960.5843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3324bp|location=Sequence derived from alignment at L-elsbetiae_contig1960:17404..20727+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1960:17404..20727+ >mRNA_L-elsbetiae_contig1960.5843.1 ID=mRNA_L-elsbetiae_contig1960.5843.1|Name=mRNA_L-elsbetiae_contig1960.5843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4788bp|location=Sequence derived from alignment at L-elsbetiae_contig1960:17404..20727+ (Laminarionema elsbetiae ELsaHSoW15)back to top |