mRNA_L-elsbetiae_contig1957.5829.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1957.5829.1
Unique NamemRNA_L-elsbetiae_contig1957.5829.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1957.5829.1 vs. uniprot
Match: D7G7A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.280e-42
Identity = 117/181 (64.64%), Postives = 120/181 (66.30%), Query Frame = 1 
Query:  673 FAGTNGNGAMHARTGSNG-EDFSDFQGSXXXXXXXXXAAXXX------GAATXXXXXXXXXXXXXXXXANGGVTNPKWRDVSSLVDLGGLSSNTEKKVAQQKVVEQTFQSNNNSFAGLDGFKKPQPQGMGMNRPLSGMTGLSGXXXXXXXXXXXXXXXXGAQQPMPQQQ-----MQGGWMG 1179
            FAG NGNGA+HAR  S G EDFSDFQGS  XXXXXXX  XXX      GAAT                 NG VTNPKWRDVSSLVDLGGLSSNT+KKVA+QKVVEQTFQSNNNSFAGLDGFK PQPQGMGMNRPLSGMTGLSG                G QQP          MQGGWMG
Sbjct:  292 FAGNNGNGAVHARAPSTGNEDFSDFQGSSSXXXXXXXXXXXXXXXXXTGAAT-----------------NGAVTNPKWRDVSSLVDLGGLSSNTDKKVAEQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGMTGLSGGAGTGMMMGGGM----GVQQPXXXXXXXXXXMQGGWMG 451
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BLAST of mRNA_L-elsbetiae_contig1957.5829.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-12
Identity = 69/156 (44.23%), Postives = 75/156 (48.08%), Query Frame = 1 
Query:  493 GLFGQEFSGFSAAPVXXXXXXXXXXXQPFGTGGAAFADPFVAAPTPLATATSAMSGGGGGFAGTNGNGAMHARTGSNG-EDFSDFQGSXXXXXXXXX----AAXXXGAATXXXXXXXXXXXXXXXXANGGVTNPKWRDVSSLVDLGGLSSNTEKKV 945
            G+FGQ+FSGFSA P        XXXX         FA                       F+G NGNGA+HAR  S G EDFSDFQG              A+   GAAT                 NG VTNPKWRDVSSLVDLGGLSSNT+KKV
Sbjct:  425 GVFGQDFSGFSAVPAAGQPLGAXXXXXXXXXXXXPFAXXXXXXXXXXXXXXXXXXXXXXXFSGNNGNGAVHARAPSTGNEDFSDFQGCSGAPGGGGETTGAASGGTGAAT-----------------NGAVTNPKWRDVSSLVDLGGLSSNTDKKV 563
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1957.5829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A0_ECTSI2.280e-4264.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZR7_9PHAE1.440e-1244.23ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1957contigL-elsbetiae_contig1957:17455..20478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue8.5e-39
Seed eggNOG ortholog2880.D7G7A0
KEGG koko:K12471,ko:K12486,ko:K14297
KEGG TC1.I.1
KEGG Pathwayko03013,ko04144,ko05164,map03013,map04144,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2056@1,KOG2056@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-04_003610.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131
Exons4
Model size1419
Cds size1419
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1957.5829.1prot_L-elsbetiae_contig1957.5829.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1957 17455..20478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.8270154-CDS-L-elsbetiae_contig1957:17454..175771622815811.8270154-CDS-L-elsbetiae_contig1957:17454..17577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 17455..17577 +
1691683118.4194832-CDS-L-elsbetiae_contig1957:17454..175771691683118.4194832-CDS-L-elsbetiae_contig1957:17454..17577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 17455..17577 +
1622815811.8393512-CDS-L-elsbetiae_contig1957:17969..184401622815811.8393512-CDS-L-elsbetiae_contig1957:17969..18440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 17970..18440 +
1691683118.4312654-CDS-L-elsbetiae_contig1957:17969..184401691683118.4312654-CDS-L-elsbetiae_contig1957:17969..18440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 17970..18440 +
1622815811.85153-CDS-L-elsbetiae_contig1957:19170..195181622815811.85153-CDS-L-elsbetiae_contig1957:19170..19518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 19171..19518 +
1691683118.4417214-CDS-L-elsbetiae_contig1957:19170..195181691683118.4417214-CDS-L-elsbetiae_contig1957:19170..19518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 19171..19518 +
1622815811.8612666-CDS-L-elsbetiae_contig1957:20001..204781622815811.8612666-CDS-L-elsbetiae_contig1957:20001..20478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 20002..20478 +
1691683118.4515078-CDS-L-elsbetiae_contig1957:20001..204781691683118.4515078-CDS-L-elsbetiae_contig1957:20001..20478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 20002..20478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1957.5829.1

>prot_L-elsbetiae_contig1957.5829.1 ID=prot_L-elsbetiae_contig1957.5829.1|Name=mRNA_L-elsbetiae_contig1957.5829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=473bp
LLFGSRSGTTAKGKYSDTAVEEPSYRSKAAEPEKEKEASSKPKRDRKKSS
GGPKLAIKIKDKGGGGGGGGGGGGVVVAKPVAAAAAAVPDLLGGDLLSSD
PAPAPASTAAAGGGFGDLFAAAPIAATNGGGGFDGFDPRGGSSAAAPAAA
AAVPTPVAAPPAGGGLFGQEFSGFSAAPVAAPAPAAVPAAQPFGTGGAAF
ADPFVAAPTPLATATSAMSGGGGGFAGTNGNGAMHARTGSNGEDFSDFQG
SGSGSGSGSGAAAAAGAATTTGGGGGGGGSSGGAAANGGVTNPKWRDVSS
LVDLGGLSSNTEKKVAQQKVVEQTFQSNNNSFAGLDGFKKPQPQGMGMNR
PLSGMTGLSGGGGGGGGGMMGGGGMMGAQQPMPQQQMQGGWMGGGQQGMG
AAGAGTAGWGQQPGQQPGQQQQQQQQGFGMGGMQGGAAATGMGAMQQSGA
GMAGSKPAGGAAGGTTMPGGFF*
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mRNA from alignment at L-elsbetiae_contig1957:17455..20478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1957.5829.1 ID=mRNA_L-elsbetiae_contig1957.5829.1|Name=mRNA_L-elsbetiae_contig1957.5829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3024bp|location=Sequence derived from alignment at L-elsbetiae_contig1957:17455..20478+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTTTTTGGGTCTCGCAGCGGGACGACTGCGAAGGGGAAGTACTCAGA
CACGGCGGTGGAGGAACCGAGCTACAGAAGCAAGGCGGCTGAGCCCGAAA
AAGAGAAAGAGGCGTCTTCCAAGGTGAGAAGAAAGAGGCGGGAAAAAAAA
CATTGTTGCAGTAAAATATATGTAACGGGGGAGACTAAAGTGCGTGTTCA
CAGCGTGTTTCCGCTCTGAGAACACCGATTTTTAGCGGTTTTGGAGGTTA
TCATACATGGGATGCTAGAGTCTTTTACGACTAGAGACATGCATTCGAGT
GTGGCCCGCATATGGCTTTCCTTAGCGTAGAAAATACAGTATTCCAGCGG
TTCGAAGGTCGTATTATGCTGTCGCTTTTTGATAGGTGGACTAGTATGTA
AGGGGTGTTTGCTGCTGCAAAGGTGCGGCGAAAGAGGACGTCCCGTAACC
CTCCGCCCCCCCCCCCCTCCCCGTCTAATTGCTGTTTTCGGCCCCCTCTC
CTCTCCCCGCGAAAGCCCAAGCGTGACCGCAAGAAATCTTCCGGCGGTCC
GAAGCTGGCCATCAAGATTAAGGATAAGGGTGGTGGCGGCGGCGGCGGCG
GCGGAGGAGGAGGAGTAGTCGTCGCTAAGCCGGTCGCCGCTGCCGCTGCC
GCCGTACCAGATCTCCTCGGCGGCGATCTCCTGTCGTCCGATCCCGCTCC
CGCTCCAGCCTCGACCGCCGCCGCCGGCGGTGGGTTCGGAGACTTGTTTG
CTGCCGCGCCTATCGCCGCCACCAACGGCGGCGGAGGGTTCGATGGTTTT
GATCCCCGCGGCGGGTCTTCTGCGGCTGCGCCGGCGGCGGCGGCGGCGGT
CCCCACGCCCGTGGCGGCACCGCCTGCTGGGGGGGGCTTGTTTGGGCAGG
AGTTTTCGGGGTTTTCGGCGGCACCTGTGGCGGCGCCGGCGCCGGCGGCA
GTGCCGGCGGCACAACCGTTTGGAACGGGCGGAGCGGTGAGCCTCGTTGC
GGTCGGGCGGGTGTTGGAAATACATATTCGTTCAACCCTCTCGGAGAGCA
CATTACTACTGTCTCTCTTCCTCTCTCCTTCTCTTACACACAACACACGC
ACACACACACTCGCTCACTCTCCTTGTTGCGATATTGGGCGTATGGTTTC
TTCTCGTGCTGTCTAAGCGCAAGCGTGCTCTGTGTTTCATATCAACCCGA
TTTGTGTTTTTATGACAATCGGAGAATCAGCTCGTTTTGCTGGGGAGATT
CAGCAAAAATCTCCGGCCGGCTCGAGACTGAAAGTTGAATGCTGTGGCTG
GTTGCTGCTGCTGGGTTGCCCTTGGAGCTGCTACGACCCCCGCCACCGCC
TTCAATCGCGCCTCTTTGTCGCCTACGGGGGCGGACATTTTGCCCTCACC
CGTACGTACCCCACCATTTCGCAAGATGCCGCACGCGATGCGACAACTTC
TCGTGAGTGTGCTTGTTCTGTGCACTCACTCACTCTTCCTCCGTCGTCGA
GTCACGAGCCTCACCATCCCCTTCCGATGGTAATGAGGAAGCACGTTTTG
CTCTGCGACGTCAGGATGCGCCCCCGGTAGAGCAGAAATTACACACACAC
ACACACATGTCCGTCAACTCGTGCCGCCCTGCCTCACGGAGCCCCCTCTC
CCGGGCGACCCCCCGGCCCCGGTCCTGCCCTGCGTACACATTTGCATATT
TTTTCTTCTTCTCCAGGCGTTCGCAGACCCTTTCGTGGCTGCGCCCACCC
CGCTGGCGACGGCCACCTCGGCCATGAGCGGCGGCGGCGGCGGGTTCGCG
GGCACCAACGGCAACGGAGCGATGCACGCAAGGACCGGCTCCAACGGCGA
AGACTTCAGCGATTTCCAGGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCG
GTGCTGCCGCCGCCGCAGGCGCTGCCACCACCACCGGCGGCGGCGGCGGC
GGCGGCGGCAGCAGCGGCGGGGCCGCGGCGAACGGCGGCGTGACCAACCC
CAAGTGGAGGGACGTGTCGTCTCTCGTGGACCTAGGAGGCCTAAGCAGCA
ACACGGAGAAGAAGGTTGGTGCTTTGTCTGCCTGCTGATGTGATTGCTGT
TTTTTTTTTTTACGTTTGTGCCTGTTGTTGGTTTTGGTGATTGATTGGTT
TTGGTGACGTAGCATGCGGGGTACGGAGTGGGATGGACTGGTAGAAGGCA
GGGTAAGAACGGCATGGTTTGCCGGAGACGGTCAAGTCGGAAGATGGGAG
ATTGAGATGGAGATATCTAAGGAGAGGAAAAAGGAGGCTGTGCTGGGTTT
TTTTCAGAGAGCTTGACCCGGTCTGCTCATTTTTTCACGTGTGTCTCTCC
TGGCATCGCTACTAGGACATGGTGGAGCACTGAATGCCATGGCAGATAGC
AACTTACTCGACTCGCCCCCTTGTGCGGCTTGGGCGCGTGTGCGAACATG
AAGACTGGATAGACTTGAGACATCGAAGAAAAACAGTGACACAAACAATC
GACCCGTCGAAACCGCCGCGGCACGCACTTTTATAAAAAAAACACAGGTT
GCGCAGCAGAAGGTCGTTGAGCAAACGTTCCAGTCGAACAACAACTCCTT
CGCGGGTCTGGACGGGTTCAAGAAGCCCCAGCCTCAGGGGATGGGGATGA
ACCGTCCCCTGTCTGGCATGACGGGATTGTCGGGCGGTGGCGGCGGCGGT
GGAGGAGGAATGATGGGTGGGGGGGGGATGATGGGCGCCCAGCAGCCGAT
GCCGCAGCAGCAGATGCAGGGAGGCTGGATGGGAGGTGGGCAGCAAGGCA
TGGGCGCCGCAGGAGCAGGGACGGCGGGCTGGGGGCAACAGCCTGGCCAG
CAGCCCGGCCAGCAGCAGCAGCAGCAGCAGCAAGGCTTCGGAATGGGAGG
CATGCAAGGAGGCGCCGCCGCCACGGGCATGGGGGCGATGCAGCAGAGCG
GGGCTGGGATGGCGGGGAGCAAGCCGGCAGGCGGAGCAGCAGGGGGTACG
ACTATGCCGGGGGGCTTCTTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1957:17455..20478+

>mRNA_L-elsbetiae_contig1957.5829.1 ID=mRNA_L-elsbetiae_contig1957.5829.1|Name=mRNA_L-elsbetiae_contig1957.5829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2838bp|location=Sequence derived from alignment at L-elsbetiae_contig1957:17455..20478+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTTTTTGGGTCTCGCAGCGGGACGACTGCGAAGGGGAAGTACTCAGA
CACGGCGGTGGAGGAACCGAGCTACAGAAGCAAGGCGGCTGAGCCCGAAA
AAGAGAAAGAGGCGTCTTCCAAGCTTCTTTTTGGGTCTCGCAGCGGGACG
ACTGCGAAGGGGAAGTACTCAGACACGGCGGTGGAGGAACCGAGCTACAG
AAGCAAGGCGGCTGAGCCCGAAAAAGAGAAAGAGGCGTCTTCCAAGCCCA
AGCGTGACCGCAAGAAATCTTCCGGCGGTCCGAAGCTGGCCATCAAGATT
AAGGATAAGGGTGGTGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGTAGT
CGTCGCTAAGCCGGTCGCCGCTGCCGCTGCCGCCGTACCAGATCTCCTCG
GCGGCGATCTCCTGTCGTCCGATCCCGCTCCCGCTCCAGCCTCGACCGCC
GCCGCCGGCGGTGGGTTCGGAGACTTGTTTGCTGCCGCGCCTATCGCCGC
CACCAACGGCGGCGGAGGGTTCGATGGTTTTGATCCCCGCGGCGGGTCTT
CTGCGGCTGCGCCGGCGGCGGCGGCGGCGGTCCCCACGCCCGTGGCGGCA
CCGCCTGCTGGGGGGGGCTTGTTTGGGCAGGAGTTTTCGGGGTTTTCGGC
GGCACCTGTGGCGGCGCCGGCGCCGGCGGCAGTGCCGGCGGCACAACCGT
TTGGAACGGGCGGAGCGCCCAAGCGTGACCGCAAGAAATCTTCCGGCGGT
CCGAAGCTGGCCATCAAGATTAAGGATAAGGGTGGTGGCGGCGGCGGCGG
CGGCGGAGGAGGAGGAGTAGTCGTCGCTAAGCCGGTCGCCGCTGCCGCTG
CCGCCGTACCAGATCTCCTCGGCGGCGATCTCCTGTCGTCCGATCCCGCT
CCCGCTCCAGCCTCGACCGCCGCCGCCGGCGGTGGGTTCGGAGACTTGTT
TGCTGCCGCGCCTATCGCCGCCACCAACGGCGGCGGAGGGTTCGATGGTT
TTGATCCCCGCGGCGGGTCTTCTGCGGCTGCGCCGGCGGCGGCGGCGGCG
GTCCCCACGCCCGTGGCGGCACCGCCTGCTGGGGGGGGCTTGTTTGGGCA
GGAGTTTTCGGGGTTTTCGGCGGCACCTGTGGCGGCGCCGGCGCCGGCGG
CAGTGCCGGCGGCACAACCGTTTGGAACGGGCGGAGCGGCGTTCGCAGAC
CCTTTCGTGGCTGCGCCCACCCCGCTGGCGACGGCCACCTCGGCCATGAG
CGGCGGCGGCGGCGGGTTCGCGGGCACCAACGGCAACGGAGCGATGCACG
CAAGGACCGGCTCCAACGGCGAAGACTTCAGCGATTTCCAGGGCAGCGGC
AGCGGCAGCGGCAGCGGCAGCGGTGCTGCCGCCGCCGCAGGCGCTGCCAC
CACCACCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGGGCCGCGG
CGAACGGCGGCGTGACCAACCCCAAGTGGAGGGACGTGTCGTCTCTCGTG
GACCTAGGAGGCCTAAGCAGCAACACGGAGAAGAAGGCGTTCGCAGACCC
TTTCGTGGCTGCGCCCACCCCGCTGGCGACGGCCACCTCGGCCATGAGCG
GCGGCGGCGGCGGGTTCGCGGGCACCAACGGCAACGGAGCGATGCACGCA
AGGACCGGCTCCAACGGCGAAGACTTCAGCGATTTCCAGGGCAGCGGCAG
CGGCAGCGGCAGCGGCAGCGGTGCTGCCGCCGCCGCAGGCGCTGCCACCA
CCACCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGGGCCGCGGCG
AACGGCGGCGTGACCAACCCCAAGTGGAGGGACGTGTCGTCTCTCGTGGA
CCTAGGAGGCCTAAGCAGCAACACGGAGAAGAAGGTTGCGCAGCAGAAGG
TCGTTGAGCAAACGTTCCAGTCGAACAACAACTCCTTCGCGGGTCTGGAC
GGGTTCAAGAAGCCCCAGCCTCAGGGGATGGGGATGAACCGTCCCCTGTC
TGGCATGACGGGATTGTCGGGCGGTGGCGGCGGCGGTGGAGGAGGAATGA
TGGGTGGGGGGGGGATGATGGGCGCCCAGCAGCCGATGCCGCAGCAGCAG
ATGCAGGGAGGCTGGATGGGAGGTGGGCAGCAAGGCATGGGCGCCGCAGG
AGCAGGGACGGCGGGCTGGGGGCAACAGCCTGGCCAGCAGCCCGGCCAGC
AGCAGCAGCAGCAGCAGCAAGGCTTCGGAATGGGAGGCATGCAAGGAGGC
GCCGCCGCCACGGGCATGGGGGCGATGCAGCAGAGCGGGGCTGGGATGGC
GGGGAGCAAGCCGGCAGGCGGAGCAGCAGGGGGTACGACTATGCCGGGGG
GCTTCTTCTGAGTTGCGCAGCAGAAGGTCGTTGAGCAAACGTTCCAGTCG
AACAACAACTCCTTCGCGGGTCTGGACGGGTTCAAGAAGCCCCAGCCTCA
GGGGATGGGGATGAACCGTCCCCTGTCTGGCATGACGGGATTGTCGGGCG
GTGGCGGCGGCGGTGGAGGAGGAATGATGGGTGGGGGGGGGATGATGGGC
GCCCAGCAGCCGATGCCGCAGCAGCAGATGCAGGGAGGCTGGATGGGAGG
TGGGCAGCAAGGCATGGGCGCCGCAGGAGCAGGGACGGCGGGCTGGGGGC
AACAGCCTGGCCAGCAGCCCGGCCAGCAGCAGCAGCAGCAGCAGCAAGGC
TTCGGAATGGGAGGCATGCAAGGAGGCGCCGCCGCCACGGGCATGGGGGC
GATGCAGCAGAGCGGGGCTGGGATGGCGGGGAGCAAGCCGGCAGGCGGAG
CAGCAGGGGGTACGACTATGCCGGGGGGCTTCTTCTGA
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