mRNA_L-elsbetiae_contig1956.5824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1956.5824.1
Unique NamemRNA_L-elsbetiae_contig1956.5824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: A0A7S3Y7G2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7G2_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 6.290e-13
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:  215 WCWLMLAFLMASRSPMLYACAAAAASKTYYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQK 442
            +C L+L  ++ S    ++A +   +  ++YTVLGVEP  S+E +++AYR+ AVKWHPDKN  N E AE KFKEIQ+
Sbjct:   22 FCVLVLFVVVLSFREAIWASSHGQSVSSHYTVLGVEPKASQEEIKKAYRKLAVKWHPDKNVDNKEMAEKKFKEIQE 97
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: B6TTQ4_MAIZE (J domain-containing protein n=2 Tax=Andropogoneae TaxID=147429 RepID=B6TTQ4_MAIZE)

HSP 1 Score: 67.0 bits (162), Expect = 1.820e-11
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 2 
Query:  299 YYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEI 436
            YY VLGV+ G S+++L++AYR+ A++WHPDKN+ N ++AE KFKEI
Sbjct:    5 YYKVLGVDRGASDDDLKKAYRKLAMRWHPDKNSTNKKEAETKFKEI 50
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: G1TSM3_RABIT (J domain-containing protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1TSM3_RABIT)

HSP 1 Score: 67.0 bits (162), Expect = 6.610e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:  299 YYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQKVL 448
            YY VLGV+   S E++++AYR+ A+KWHPDKN  N E+AE KFK++ ++L
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPDNKEEAERKFKQVAEIL 53
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: UPI0003316683 (dnaJ homolog subfamily B member 8 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003316683)

HSP 1 Score: 69.7 bits (169), Expect = 7.600e-11
Identity = 26/49 (53.06%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:  296 TYYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQK 442
            +YY VLGV+ G S+E++++AYR+ A++WHPDKN GN E+AE +FK++ +
Sbjct:    3 SYYEVLGVQAGASQEDIKKAYRKLALRWHPDKNPGNKEEAEKRFKQVSE 51
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: C1MP25_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MP25_MICPC)

HSP 1 Score: 67.0 bits (162), Expect = 8.040e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  302 YTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEI 436
            Y VLGV P  S + +R+AYR+AAVKWHPDKN GN EQAE  FK +
Sbjct:   12 YAVLGVPPDASADAIRKAYRKAAVKWHPDKNPGNQEQAESMFKRV 56
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: A0A7R9TD92_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TD92_MICPS)

HSP 1 Score: 67.0 bits (162), Expect = 8.430e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  302 YTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEI 436
            Y VLGV P  S + +R+AYR+AAVKWHPDKN GN EQAE  FK +
Sbjct:   33 YAVLGVPPDASADAIRKAYRKAAVKWHPDKNPGNQEQAESMFKRV 77
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: A0A2U1KA51_ARTAN (DnaJ protein 1 n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A2U1KA51_ARTAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-10
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:  299 YYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQK 442
            YY +LGV+ G  +++L++AYR+ A+KWHPDKN  N + AE KFK+I +
Sbjct:    5 YYKILGVDKGAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISE 52
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: A0A8C9UJK8_SPEDA (J domain-containing protein n=3 Tax=Marmotini TaxID=337730 RepID=A0A8C9UJK8_SPEDA)

HSP 1 Score: 65.1 bits (157), Expect = 1.130e-10
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  299 YYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQKVLL 451
            YY VLGV+   S E++++AYR+ A++WHPDKN  N E+AE KFK++ +V +
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALRWHPDKNPENKEEAERKFKQVAEVFV 54
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: R1FG89_EMIHU (J domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FG89_EMIHU)

HSP 1 Score: 68.6 bits (166), Expect = 1.190e-10
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:  302 YTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQKVLL*ADAPSAVAF 481
            YTVLGVE   SE+ + +AY+RAA+KWHPDKNT   E AE KFKEI       + P   AF
Sbjct:    5 YTVLGVERNASEKEISKAYKRAALKWHPDKNTERPELAEKKFKEISDAFQLLNDPDKRAF 64
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BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Match: A0A091ERH1_FUKDA (DnaJ like protein subfamily B member 8 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091ERH1_FUKDA)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-10
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2 
Query:  296 TYYTVLGVEPGVSEENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQKVLL*ADAPSAVAF 481
            TYY VLGV+ G S +++++AYR+ A++WHPDKN    E+AE KFK++ +       P   +F
Sbjct:    3 TYYEVLGVQAGASADDIKKAYRKLALRWHPDKNPDRKEEAEKKFKQVSQAYEVLSDPKKRSF 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1956.5824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y7G2_HETAK6.290e-1348.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B6TTQ4_MAIZE1.820e-1158.70J domain-containing protein n=2 Tax=Andropogoneae ... [more]
G1TSM3_RABIT6.610e-1154.00J domain-containing protein n=1 Tax=Oryctolagus cu... [more]
UPI00033166837.600e-1153.06dnaJ homolog subfamily B member 8 n=1 Tax=Sorex ar... [more]
C1MP25_MICPC8.040e-1164.44Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9TD92_MICPS8.430e-1164.44Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2U1KA51_ARTAN1.030e-1052.08DnaJ protein 1 n=2 Tax=Pentapetalae TaxID=1437201 ... [more]
A0A8C9UJK8_SPEDA1.130e-1050.98J domain-containing protein n=3 Tax=Marmotini TaxI... [more]
R1FG89_EMIHU1.190e-1055.00J domain-containing protein n=1 Tax=Emiliania huxl... [more]
A0A091ERH1_FUKDA1.240e-1043.55DnaJ like protein subfamily B member 8 n=1 Tax=Fuk... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1956contigL-elsbetiae_contig1956:15596..16724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score69.7
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog42254.XP_004603845.1
Preferred nameDNAJB8
KEGG koko:K09514
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0008150,GO:0009987,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051087,GO:0051128,GO:0051129,GO:0061077,GO:0065007,GO:0090083,GO:0090084
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs39STJ@33154,3BGE0@33208,3CSMS@33213,3J2XB@40674,489JU@7711,497C0@7742,COG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons2
Model size668
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1956.5824.1prot_L-elsbetiae_contig1956.5824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1956 15810..16690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.6208842-UTR-L-elsbetiae_contig1956:15595..158091622815811.6208842-UTR-L-elsbetiae_contig1956:15595..15809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 15596..15809 -
1691683118.29193-UTR-L-elsbetiae_contig1956:15595..158091691683118.29193-UTR-L-elsbetiae_contig1956:15595..15809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 15596..15809 -
1622815811.6520388-UTR-L-elsbetiae_contig1956:16690..167241622815811.6520388-UTR-L-elsbetiae_contig1956:16690..16724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 16691..16724 -
1691683118.3372724-UTR-L-elsbetiae_contig1956:16690..167241691683118.3372724-UTR-L-elsbetiae_contig1956:16690..16724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 16691..16724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.630583-CDS-L-elsbetiae_contig1956:15809..159551622815811.630583-CDS-L-elsbetiae_contig1956:15809..15955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 15810..15955 -
1691683118.3053613-CDS-L-elsbetiae_contig1956:15809..159551691683118.3053613-CDS-L-elsbetiae_contig1956:15809..15955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 15810..15955 -
1622815811.6412175-CDS-L-elsbetiae_contig1956:16416..166901622815811.6412175-CDS-L-elsbetiae_contig1956:16416..16690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 16417..16690 -
1691683118.3224778-CDS-L-elsbetiae_contig1956:16416..166901691683118.3224778-CDS-L-elsbetiae_contig1956:16416..16690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 16417..16690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1956.5824.1

>prot_L-elsbetiae_contig1956.5824.1 ID=prot_L-elsbetiae_contig1956.5824.1|Name=mRNA_L-elsbetiae_contig1956.5824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MSPDGRDKREASLVDCSRGGGCTFVPNTCVLIVAPTASTSFKRTRAPRRC
CAGAAVARNAWCWLMLAFLMASRSPMLYACAAAAASKTYYTVLGVEPGVS
EENLRRAYRRAAVKWHPDKNTGNIEQAEMKFKEIQKVLL*
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mRNA from alignment at L-elsbetiae_contig1956:15596..16724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1956.5824.1 ID=mRNA_L-elsbetiae_contig1956.5824.1|Name=mRNA_L-elsbetiae_contig1956.5824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1129bp|location=Sequence derived from alignment at L-elsbetiae_contig1956:15596..16724- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGGCGCAGCTCCTGCCAAGTGTGGGCTACGATGTCCCCCGATGGGC
GAGATAAAAGGGAGGCAAGTCTGGTGGATTGCAGTCGGGGTGGTGGATGC
ACCTTCGTCCCGAACACGTGTGTCCTCATAGTAGCACCGACGGCCTCCAC
ATCATTCAAACGGACACGTGCACCGAGGCGCTGCTGTGCTGGTGCTGCTG
TCGCCCGGAACGCCTGGTGCTGGCTTATGCTGGCGTTTCTAATGGCTTCG
AGATCCCCGATGCTCTACGCTTGTGCGGCAGCGGCGGCGAGCAAGACCTA
CTACACAGGTGAGGGAACGAATAGTCACGGGCAGTCTGGCGTCGCTACGC
GCAGATCTCCGCCTGTGCGGCCGCATGTGCTAGCTATTTAGATTATGTAC
ACCTTAGACCACTACTACTGTAGATTCTCAGTGGCTTGACAGTGAAACAT
CCAGTTAGTGGCTTGGCACCAGTTCCTAAGGGCTAACGTTCGGATCAAGC
GCACTCCCTATCTGGCCATTCTCGAGGAGTATAGTCTATCGTAGCACACG
ATCGAGAAAATCAATTGCATCGTGTGACTCTCTCACAGCGGCGGCACAAA
TCTGTCTGCCTGTGCTCATGTATGCACATGCGGATGCCTCGGTGCATGTT
CGAATACGGCGAGTAATACGCAACAGGGTGGTTGGGGATCAGCTCAACGC
TTGTTCCATAAATGTCGGCGCTCTTCCACGATCTGCTCGCTGCTCTTGCG
CCTGTCTCCCTCTCTGCAGTTCTGGGTGTCGAGCCAGGGGTTAGCGAGGA
AAATCTGCGGCGGGCCTACCGGCGAGCCGCGGTAAAGTGGCACCCGGACA
AAAACACCGGCAACATCGAGCAGGCCGAGATGAAGTTCAAGGAGATTCAG
AAGGTGCTGCTGTGAGCCGATGCGCCCAGCGCGGTTGCTTTCTCTTGAGG
ATGGACGCACGACACAGACGTTCAGATGCCTTTTATCCTGCATGCCCTTC
TTATGTAAGACAGACTCGCTGTTCCACAGCTTTACCTCAGCAGGGAAAGA
GCGGGGAAATCGATGATGGACCTCAGTCATTCATGCCCGTGTCCAGGCCC
GGGGGGAACTCGAACACGCTGCAAGACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1956:15596..16724-

>mRNA_L-elsbetiae_contig1956.5824.1 ID=mRNA_L-elsbetiae_contig1956.5824.1|Name=mRNA_L-elsbetiae_contig1956.5824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1956:15596..16724- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCCCCGATGGGCGAGATAAAAGGGAGGCAAGTCTGGTGGATTGCAG
TCGGGGTGGTGGATGCACCTTCGTCCCGAACACGTGTGTCCTCATAGTAG
CACCGACGGCCTCCACATCATTCAAACGGACACGTGCACCGAGGCGCTGC
TGTGCTGGTGCTGCTGTCGCCCGGAACGCCTGGTGCTGGCTTATGCTGGC
GTTTCTAATGGCTTCGAGATCCCCGATGCTCTACGCTTGTGCGGCAGCGG
CGGCGAGCAAGACCTACTACACAGATGTCCCCCGATGGGCGAGATAAAAG
GGAGGCAAGTCTGGTGGATTGCAGTCGGGGTGGTGGATGCACCTTCGTCC
CGAACACGTGTGTCCTCATAGTAGCACCGACGGCCTCCACATCATTCAAA
CGGACACGTGCACCGAGGCGCTGCTGTGCTGGTGCTGCTGTCGCCCGGAA
CGCCTGGTGCTGGCTTATGCTGGCGTTTCTAATGGCTTCGAGATCCCCGA
TGCTCTACGCTTGTGCGGCAGCGGCGGCGAGCAAGACCTACTACACAGTT
CTGGGTGTCGAGCCAGGGGTTAGCGAGGAAAATCTGCGGCGGGCCTACCG
GCGAGCCGCGGTAAAGTGGCACCCGGACAAAAACACCGGCAACATCGAGC
AGGCCGAGATGAAGTTCAAGGAGATTCAGAAGGTGCTGCTGTGATTCTGG
GTGTCGAGCCAGGGGTTAGCGAGGAAAATCTGCGGCGGGCCTACCGGCGA
GCCGCGGTAAAGTGGCACCCGGACAAAAACACCGGCAACATCGAGCAGGC
CGAGATGAAGTTCAAGGAGATTCAGAAGGTGCTGCTGTGA
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