mRNA_L-elsbetiae_contig1955.5817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1955.5817.1
Unique NamemRNA_L-elsbetiae_contig1955.5817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1955.5817.1 vs. uniprot
Match: D8LLC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.110e-14
Identity = 63/127 (49.61%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:  229 PGMLGNLTSSISSAAHSVTDAAXXXXXXXXXXXXXXXSGIMGHKKDGDAAPA----PAAQDEAAPE--KEGG-----LGGFLHSVTDAAKGAAQAVKDEIQADIKPALKEDDATTAADTATPAAPAK 576
            PG++GNLTS+I++AAHSVTDAA               +GI+G  K G A  A    PA      PE  KEGG     L    H+VTD  KGA  AV+DEIQADIKP+LK+D A   AD A  AAPAK
Sbjct:   87 PGIIGNLTSTITNAAHSVTDAA---------------TGIVGGGKKGGADAAAVEVPAVPAVETPEEGKEGGGIXXFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAP--ADAAADAAPAK 196
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BLAST of mRNA_L-elsbetiae_contig1955.5817.1 vs. uniprot
Match: A0A6H5JTZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-13
Identity = 62/130 (47.69%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:  229 PGMLGNLTSSISSAAHSVTDAAXXXXXXXXXXXXXXXSGIMGH-KKDG-DAAPAPAAQDEAAPEKE--------GGLGGFL----HSVTDAAKGAAQAVKDEIQADIKPALKEDDATTAADTATPAAPAK 576
            PG++GNLTS+I++AAHSVTD A               +GI+G  KKDG DAA                      GG+GGFL    H+VTD  KGA  AV+DEIQADIKP+LK+D A   AD A  AAPAK
Sbjct:   37 PGIIGNLTSTITNAAHSVTDTA---------------AGIIGGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGIGGFLANVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAP--ADAAADAAPAK 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1955.5817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLC9_ECTSI2.110e-1449.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ4_9PHAE1.600e-1347.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1955contigL-elsbetiae_contig1955:13940..15757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002160.1
Exons2
Model size579
Cds size579
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.929014-CDS-L-elsbetiae_contig1955:13939..140971622815810.929014-CDS-L-elsbetiae_contig1955:13939..14097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 13940..14097 -
1691683117.92562-CDS-L-elsbetiae_contig1955:13939..140971691683117.92562-CDS-L-elsbetiae_contig1955:13939..14097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 13940..14097 -
1622815810.9391952-CDS-L-elsbetiae_contig1955:15336..157571622815810.9391952-CDS-L-elsbetiae_contig1955:15336..15757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 15337..15757 -
1691683117.9349077-CDS-L-elsbetiae_contig1955:15336..157571691683117.9349077-CDS-L-elsbetiae_contig1955:15336..15757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 15337..15757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1955.5817.1prot_L-elsbetiae_contig1955.5817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1955 13940..15757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1955.5817.1

>prot_L-elsbetiae_contig1955.5817.1 ID=prot_L-elsbetiae_contig1955.5817.1|Name=mRNA_L-elsbetiae_contig1955.5817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
QVTGTGGEEQPDAAPTPTPAPAGAPEPTPAPAAGVGGLVGAIKNAVTGGG
SSGGGDTVAAPGPSTAGEEASPPDAAPGMLGNLTSSISSAAHSVTDAATS
TISSAAHSVTGAASGIMGHKKDGDAAPAPAAQDEAAPEKEGGLGGFLHSV
TDAAKGAAQAVKDEIQADIKPALKEDDATTAADTATPAAPAK*
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mRNA from alignment at L-elsbetiae_contig1955:13940..15757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1955.5817.1 ID=mRNA_L-elsbetiae_contig1955.5817.1|Name=mRNA_L-elsbetiae_contig1955.5817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1818bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:13940..15757- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTACCGGGACGGGCGGCGAGGAACAGCCCGACGCAGCACCTACCCC
CACCCCCGCACCCGCCGGTGCCCCCGAACCAACACCCGCGCCGGCAGCCG
GGGTCGGCGGGCTTGTGGGCGCCATCAAGAACGCGGTGACCGGCGGCGGT
TCTTCTGGCGGTGGAGACACCGTCGCCGCGCCGGGGCCCAGCACCGCCGG
CGAGGAGGCATCGCCGCCGGACGCTGCGCCGGGAATGCTGGGCAATCTGA
CGTCTTCCATCTCCAGCGCCGCCCACAGCGTGACCGATGCGGCGACTTCC
ACGATCAGCAGCGCCGCTCACAGCGTGACCGGTGCAGCATCGGGTATCAT
GGGGCACAAGAAGGACGGGGATGCGGCGCCGGCGCCGGCGGCGCAAGATG
AAGCAGCGCCGGAGAAGGAAGGTAAATATTTATTATGTATGTAGTTGTTC
GCTTTCTCCGCTGTATGCCTGTGCGGTCAGCGAAGTTAAGAGTCAGCCGG
AGCGGGGAAGCCGACTACCGTAATATCCCTCGAGAACGCCCCGGGGGGAC
GGAAATTAATATCGCGTAAAAAAATCGCCTTGGGGGGATCTTTTTTCGAA
GAAAACAACACCCCGGGGCGAAAACAGTGTGGTCTCCGTTGTCCCACATA
CATATATGAATTCACACCATGGAAAGGGAAACATCTTAGTAAGTAAGACA
ATAAAAGTAACGATGATGTTACCGGAATAAATGCGGTGGGTGCTCACGAT
CGGGGGCCCTCCGGGGCGTCCCAAAAAGCAGCTGAAAAAATATCGCCCTG
GGGCGTGTTGTCAAAAAAGGCACGAAGAGACGGGCGAAAAGAAAAAAAGA
AAATGAAAATGCGGCCCCGGGGCGTTCTCAAAAGTGTTCCGTGCCAAAAA
TCGTTGTTTTAAGGGAGGGCGGCGTTCTCTCTGACGGGGGCGTTCTCAAG
GGATAGTACGGGGGTATCTCTCAGTAAATTACACCATACTTCTTTGTCTT
GCTTGACTCGTTTTTTTTTTCCCGCACCACCAAACTCTCCACCTTCATCC
CACTGTGCCTGGTGCGTGCAGTTCGGGTTCGTGTGGGTGCAGTGGTTTTG
GATAGACACCGCCTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTT
CCCATTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTT
GCGGTGTACAACCAACCGGGGTCACGCAGGAGGGAGTGAATGAACACTGG
GGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTGTGTTTTCCTT
TCTTTTTTTTGTGTTGGGNNNNNNNNNNGGGTACTCCTCCTTGGGGTGGG
GGGGGGGCGGGGGTCGCTCGGGAGGGAGTGTATGGTCGCTGGGGTTTTTT
TTTTTTTTTTTGCCCCATCTTCCTTCTGCGGTGCTTGCCTTCATTTTTAT
CGCGAGAAGGGTTCAGCCGTCCCTTTCCCCCGTCAACGTGATTACGTCGA
GGTTTTATGTACCATACGTTTTTTATGCAAATGAACCTACTCCCTTGTTT
TTTGTGCCACCACCGCACCAAACCCTCAAAACTAAACCTCATCTACAACA
TCTAGATACGTGTATATGTTCCGAATCATAAAAACTTGTTTGCATACATA
TCTATTGCAGGAGGACTTGGCGGGTTCTTGCACAGCGTAACGGATGCGGC
GAAGGGGGCCGCTCAAGCCGTCAAGGATGAGATCCAAGCGGACATCAAGC
CCGCCCTCAAGGAAGATGACGCCACCACCGCCGCCGACACTGCCACCCCC
GCGGCGCCTGCGAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1955:13940..15757-

>mRNA_L-elsbetiae_contig1955.5817.1 ID=mRNA_L-elsbetiae_contig1955.5817.1|Name=mRNA_L-elsbetiae_contig1955.5817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:13940..15757- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTACCGGGACGGGCGGCGAGGAACAGCCCGACGCAGCACCTACCCC
CACCCCCGCACCCGCCGGTGCCCCCGAACCAACACCCGCGCCGGCAGCCG
GGGTCGGCGGGCTTGTGGGCGCCATCAAGAACGCGGTGACCGGCGGCGGT
TCTTCTGGCGGTGGAGACACCGTCGCCGCGCCGGGGCCCAGCACCGCCGG
CGAGGAGGCATCGCCGCCGGACGCTGCGCCGGGAATGCTGGGCAATCTGA
CGTCTTCCATCTCCAGCGCCGCCCACAGCGTGACCGATGCGGCGACTTCC
ACGATCAGCAGCGCCGCTCACAGCGTGACCGGTGCAGCATCGGGTATCAT
GGGGCACAAGAAGGACGGGGATGCGGCGCCGGCGCCGGCGGCGCAAGATG
AAGCAGCGCCGGAGAAGGAAGCAGGTTACCGGGACGGGCGGCGAGGAACA
GCCCGACGCAGCACCTACCCCCACCCCCGCACCCGCCGGTGCCCCCGAAC
CAACACCCGCGCCGGCAGCCGGGGTCGGCGGGCTTGTGGGCGCCATCAAG
AACGCGGTGACCGGCGGCGGTTCTTCTGGCGGTGGAGACACCGTCGCCGC
GCCGGGGCCCAGCACCGCCGGCGAGGAGGCATCGCCGCCGGACGCTGCGC
CGGGAATGCTGGGCAATCTGACGTCTTCCATCTCCAGCGCCGCCCACAGC
GTGACCGATGCGGCGACTTCCACGATCAGCAGCGCCGCTCACAGCGTGAC
CGGTGCAGCATCGGGTATCATGGGGCACAAGAAGGACGGGGATGCGGCGC
CGGCGCCGGCGGCGCAAGATGAAGCAGCGCCGGAGAAGGAAGGAGGACTT
GGCGGGTTCTTGCACAGCGTAACGGATGCGGCGAAGGGGGCCGCTCAAGC
CGTCAAGGATGAGATCCAAGCGGACATCAAGCCCGCCCTCAAGGAAGATG
ACGCCACCACCGCCGCCGACACTGCCACCCCCGCGGCGCCTGCGAAGTAG
GAGGACTTGGCGGGTTCTTGCACAGCGTAACGGATGCGGCGAAGGGGGCC
GCTCAAGCCGTCAAGGATGAGATCCAAGCGGACATCAAGCCCGCCCTCAA
GGAAGATGACGCCACCACCGCCGCCGACACTGCCACCCCCGCGGCGCCTG
CGAAGTAG
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