mRNA_L-elsbetiae_contig19532.5809.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19532.5809.1
Unique NamemRNA_L-elsbetiae_contig19532.5809.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Match: A0A6H5JRM0_9PHAE (DOCKER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.260e-36
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 IVYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERLSDARGLTRLVQGSVLPQVNGGAVEVAETFLKALPSEEGNALP 252
            IVYRRVVTLLSPIECSIDDIGSRI+TMR+E    VQAG +R SD R LTRLVQGSVLPQVNGGAVEVAETFLKALP EEGNALP
Sbjct:    5 IVYRRVVTLLSPIECSIDDIGSRIVTMREE----VQAGIDRASDTRCLTRLVQGSVLPQVNGGAVEVAETFLKALPPEEGNALP 84
[Close]
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Match: D8LBY0_ECTSI (DOCKER domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.530e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERLSDARGLTRLVQGSVLPQVN 183
            VYRRVVTLLSPIECSIDDIGSRI+TMR+E+    QAG +R SD RGLTRLVQGSVLPQVN
Sbjct:    2 VYRRVVTLLSPIECSIDDIGSRIVTMREEM----QAGIDRASDTRGLTRLVQGSVLPQVN 57
[Close]
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Match: A0A7R9U2A1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2A1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.200e-11
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERLSDARGLTRLVQGSVLPQVNGGAVEVAETFL 216
            V RR   L+SPI+C++DD+  R + MR EL     A      D + L RLV GSV+PQVNGGA+E+AE FL
Sbjct: 1837 VVRRRAILMSPIDCAVDDLSKRCVQMRMELAKPPTA-----VDKQALMRLVSGSVIPQVNGGAMEIAECFL 1902
[Close]
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Match: A0A836CP73_9STRA (DOCKER domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP73_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.820e-9
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERL--SDARGLTRLVQGSVLPQVNGGAVEVAETFLKALPSE 234
            V  R V  LSPIECSIDDI +RI  MR+E    V AG +R   ++ + L +LVQGSVLPQV   A E A   L+AL  E
Sbjct:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREE----VAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPE-ASLLLRALQEE 74
[Close]
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Match: A0A7S3H9U4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9U4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.590e-6
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERLSDARGLTRLVQGSVLPQVNGGAVEVAETFL 216
            V  R +    PIE +I DI  RI  M  EL   V+  S    D   L R+VQG+V+PQVN G  EVA+ FL
Sbjct:    1 VQSREIRTYCPIEVAIYDIEERIEAMESELEKVVRNPS----DCNNLMRIVQGTVMPQVNAGVGEVAKVFL 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19532.5809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JRM0_9PHAE2.260e-3685.71DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LBY0_ECTSI1.530e-2281.67DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7R9U2A1_9STRA8.200e-1150.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CP73_9STRA3.820e-951.90DOCKER domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3H9U4_9STRA9.590e-645.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19532contigL-elsbetiae_contig19532:105..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDedicator of cytokinesis C-terminal
Ec32 orthologEc-20_003700.1
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.357379-CDS-L-elsbetiae_contig19532:104..2811622815810.357379-CDS-L-elsbetiae_contig19532:104..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19532 105..281 +
1691683117.6071014-CDS-L-elsbetiae_contig19532:104..2811691683117.6071014-CDS-L-elsbetiae_contig19532:104..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19532 105..281 +
1622815810.3707535-CDS-L-elsbetiae_contig19532:1111..12311622815810.3707535-CDS-L-elsbetiae_contig19532:1111..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19532 1112..1231 +
1691683117.6167378-CDS-L-elsbetiae_contig19532:1111..12311691683117.6167378-CDS-L-elsbetiae_contig19532:1111..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19532 1112..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19532.5809.1prot_L-elsbetiae_contig19532.5809.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19532 105..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19532.5809.1

>prot_L-elsbetiae_contig19532.5809.1 ID=prot_L-elsbetiae_contig19532.5809.1|Name=mRNA_L-elsbetiae_contig19532.5809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
IVYRRVVTLLSPIECSIDDIGSRIMTMRDELRDQVQAGSERLSDARGLTR
LVQGSVLPQVNGGAVEVAETFLKALPSEEGNALPPTTPPAVAVHDGAAG
back to top

mRNA from alignment at L-elsbetiae_contig19532:105..1231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19532.5809.1 ID=mRNA_L-elsbetiae_contig19532.5809.1|Name=mRNA_L-elsbetiae_contig19532.5809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1127bp|location=Sequence derived from alignment at L-elsbetiae_contig19532:105..1231+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCTACCGGAGGGTGGTGACGCTCCTGTCGCCGATAGAGTGCTCCAT
CGACGACATCGGTTCTCGGATCATGACGATGCGGGACGAGCTGCGGGACC
AGGTGCAGGCCGGGAGCGAGCGCCTGAGCGACGCGAGGGGACTTACGCGG
CTGGTCCAGGGGAGCGTGTTGCCGCAGGTGCATGCATATGTTATGTCGCT
ATTTATCAAATCGCCTACGTCTTTGGCGTTGTCGGTGGCTGCTGCTGTCG
TTGCTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGTTGTTGTTGGTGTT
GTTGTCGTTGTCTCGGATTGTGTGCGGGCGTTGGTGCCGGCGTTGGTGGT
GTCATCGGTGTTGGGCCGTTTGGCTGTGCATGAACTGGCAAGCTTTGAAA
GAAGAACGGCAGTTAATAATCAAAAGCTTTGTTGTCCGCTCCAGTGGCGC
AACCACGCCAATGCACACCAACGACCCCATGGGCGCTTGCACTCGCCGCC
AGGCCACTGAACTAGACCCACGAGTCACAAGCCCCACCGCAGCCTGGTCC
ATTTCGTGCTGATGCGTTCGAGAATCAATAACCGATGGTCCTAGAACCCC
CCCCCCCCCCCCCTCCCTGGGGAAATGCCCAACCAAAGCCATTTTTTTGA
CAGCGACCCTCTCCCGGGACCCCGCCCAACCCNNNNNNNNNNCCCCCCCG
CGGCCTGGCCCATTTCGTGGGGATGCGTTCGAAAACCAAAAACCGAGGGC
CCAAGACCCCCCCCCCCCCCCCCTCGTCCATGCGAACATGACATACAAAG
TCAATTTTTTCAACTGTACACTCGCGCATGGACCCCGTCAAGCCCGTGCG
TGCCCCGGATACGCCGCCGCGCCGCCCTGCCGCGCCCCCGTCTCGGCTGT
CTGTGTCTCGTGTCTGATGCCCTGGCTTGGTCGTGTCTTGCTTTCTCTTA
TGTATGTTAACAACGCCTTGTGTGTCTCTCGTACGTACCTGCTCCTACCC
GGAAAAGGTCAACGGCGGCGCGGTGGAGGTGGCGGAGACCTTCCTGAAGG
CGCTGCCGTCCGAGGAGGGGAACGCCCTCCCGCCCACGACTCCCCCAGCG
GTCGCCGTTCACGACGGCGCAGCAGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19532:105..1231+

>mRNA_L-elsbetiae_contig19532.5809.1 ID=mRNA_L-elsbetiae_contig19532.5809.1|Name=mRNA_L-elsbetiae_contig19532.5809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig19532:105..1231+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCTACCGGAGGGTGGTGACGCTCCTGTCGCCGATAGAGTGCTCCAT
CGACGACATCGGTTCTCGGATCATGACGATGCGGGACGAGCTGCGGGACC
AGGTGCAGGCCGGGAGCGAGCGCCTGAGCGACGCGAGGGGACTTACGCGG
CTGGTCCAGGGGAGCGTGTTGCCGCAGATCGTCTACCGGAGGGTGGTGAC
GCTCCTGTCGCCGATAGAGTGCTCCATCGACGACATCGGTTCTCGGATCA
TGACGATGCGGGACGAGCTGCGGGACCAGGTGCAGGCCGGGAGCGAGCGC
CTGAGCGACGCGAGGGGACTTACGCGGCTGGTCCAGGGGAGCGTGTTGCC
GCAGGTCAACGGCGGCGCGGTGGAGGTGGCGGAGACCTTCCTGAAGGCGC
TGCCGTCCGAGGAGGGGAACGCCCTCCCGCCCACGACTCCCCCAGCGGTC
GCCGTTCACGACGGCGCAGCAGGCGTCAACGGCGGCGCGGTGGAGGTGGC
GGAGACCTTCCTGAAGGCGCTGCCGTCCGAGGAGGGGAACGCCCTCCCGC
CCACGACTCCCCCAGCGGTCGCCGTTCACGACGGCGCAGCAGGC
back to top