mRNA_L-elsbetiae_contig19513.5805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19513.5805.1
Unique NamemRNA_L-elsbetiae_contig19513.5805.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19513.5805.1 vs. uniprot
Match: D7G365_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G365_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.160e-24
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 VIALLAENSRVHHADGYIYEDDGWKVSAQEAMKEGWNGILSAAYVRSLEANLNVDLSALGG 183
            +IALLAENSRVHHAD YIY D GWKVSAQEAMKEGWN I+S  YVRSLE NLNVDL  L G
Sbjct:  143 IIALLAENSRVHHADEYIYGDHGWKVSAQEAMKEGWNAIVSPEYVRSLEENLNVDLGGLEG 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19513.5805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G365_ECTSI1.160e-2480.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19513contigL-elsbetiae_contig19513:2591..2773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004670.1
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.9996943-CDS-L-elsbetiae_contig19513:2590..27731622815809.9996943-CDS-L-elsbetiae_contig19513:2590..2773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19513 2591..2773 +
1691683117.3770707-CDS-L-elsbetiae_contig19513:2590..27731691683117.3770707-CDS-L-elsbetiae_contig19513:2590..2773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19513 2591..2773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19513.5805.1prot_L-elsbetiae_contig19513.5805.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19513 2591..2773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19513.5805.1

>prot_L-elsbetiae_contig19513.5805.1 ID=prot_L-elsbetiae_contig19513.5805.1|Name=mRNA_L-elsbetiae_contig19513.5805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
VIALLAENSRVHHADGYIYEDDGWKVSAQEAMKEGWNGILSAAYVRSLEA
NLNVDLSALGG
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mRNA from alignment at L-elsbetiae_contig19513:2591..2773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19513.5805.1 ID=mRNA_L-elsbetiae_contig19513.5805.1|Name=mRNA_L-elsbetiae_contig19513.5805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig19513:2591..2773+ (Laminarionema elsbetiae ELsaHSoW15)
GTGATCGCTCTCCTGGCCGAGAACTCGCGCGTCCACCACGCCGACGGGTA
CATCTACGAAGACGACGGGTGGAAGGTCTCCGCGCAGGAGGCGATGAAAG
AGGGGTGGAACGGCATTTTGTCCGCCGCGTACGTCCGCAGCCTCGAGGCG
AACCTGAACGTGGACCTGAGCGCCCTGGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19513:2591..2773+

>mRNA_L-elsbetiae_contig19513.5805.1 ID=mRNA_L-elsbetiae_contig19513.5805.1|Name=mRNA_L-elsbetiae_contig19513.5805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig19513:2591..2773+ (Laminarionema elsbetiae ELsaHSoW15)
GTGATCGCTCTCCTGGCCGAGAACTCGCGCGTCCACCACGCCGACGGGTA
CATCTACGAAGACGACGGGTGGAAGGTCTCCGCGCAGGAGGCGATGAAAG
AGGGGTGGAACGGCATTTTGTCCGCCGCGTACGTCCGCAGCCTCGAGGCG
AACCTGAACGTGGACCTGAGCGCCCTGGGAGGCGTGATCGCTCTCCTGGC
CGAGAACTCGCGCGTCCACCACGCCGACGGGTACATCTACGAAGACGACG
GGTGGAAGGTCTCCGCGCAGGAGGCGATGAAAGAGGGGTGGAACGGCATT
TTGTCCGCCGCGTACGTCCGCAGCCTCGAGGCGAACCTGAACGTGGACCT
GAGCGCCCTGGGAGGC
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