mRNA_L-elsbetiae_contig195.5798.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig195.5798.1 vs. uniprot
Match: D8LC09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC09_ECTSI) HSP 1 Score: 488 bits (1256), Expect = 3.090e-158 Identity = 261/408 (63.97%), Postives = 298/408 (73.04%), Query Frame = 1 Query: 1 MIHSAMGRLVSLTAVFLG--QAGFASAAPTCTRVASQWAVVFPAECTTWFQQAEPRQGSVPESCIQGFTGALEVENFPWNDAVVVVDNESPGESFSLQPEQEVVKYGSGIVIMQTSWDLEGGVAWRPRMSSSAERIHSEVEYISSNQNSYLDFDLSVRYEPG-PSGRRRTRSLSVDGPEVDSDGNLDWVSFGDEASLDPSIALD-NRDGTYRPAFIYSYEQESYEXXXXXXXXDFDXXXXEFIDSMSEEGESSSHTFXXXXSHQFGEELEGRTPQPGAVQSVTSIDIYVCLDLENNLAELRFLCDPENDGDAQCFAEAGEANTQALAIHGMDMICAKECLPGQEGGVWCDIFGLDGCRMCTDDCTSICDGEAACSSCVNCREPTVAPSPSATDGSRGIPLETTSPTSA 1212 M+ SA GR SL AV LG QAG A AAPTC RVA QWAV+F AECT WFQQ R+GS PESCIQ FT A+ VENFPWND VV+VDNE+PG+ FSLQPEQ V+K+G+GIVIMQTSWD+E G W+PRMSSSAERI++EVEYI+S+ +SYLDFDLSVRYEP P R R+LS D D+ D + ++ P +A D D +Y PA++YSYE ESY+ XXX D D EFIDSM EE S + S+ F E E P P AVQSVTS+DIYVC D +NNLAELRF CDPENDGDAQCFAEAGE N +AL IHGMDM C K CL GQEGG+WCDIFGLDGCRMCTDDCTSICDGEA+CSSC+ C P V P PS TDGSRGIP+ + SPT A Sbjct: 1 MMISATGRAASLAAVLLGLQQAGLAFAAPTCERVAGQWAVIFSAECTQWFQQIGSRRGSPPESCIQQFTSAVLVENFPWNDDVVIVDNETPGDDFSLQPEQPVLKFGAGIVIMQTSWDMEDGSLWQPRMSSSAERIYAEVEYIASDNHSYLDFDLSVRYEPEHPPPGRLMRALSEDNDAPDA---ADVEEILELSATPPPLAQDATGDLSYEPAYVYSYELESYDFSXXXELEDLDSYSYEFIDSMFEE---ESSPYSQTYSYNFRGEEEVSVPPPSAVQSVTSLDIYVCTDEDNNLAELRFNCDPENDGDAQCFAEAGEPNVRALHIHGMDMYCDKVCLAGQEGGLWCDIFGLDGCRMCTDDCTSICDGEASCSSCILCGAPRVPPPPSPTDGSRGIPIMSGSPTMA 402
BLAST of mRNA_L-elsbetiae_contig195.5798.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE) HSP 1 Score: 439 bits (1129), Expect = 1.690e-132 Identity = 257/498 (51.61%), Postives = 297/498 (59.64%), Query Frame = 1 Query: 1 MIHSAMGRLVSLTAVFLG--QAGFASAAPTCTRVASQWAVVFPAECTTWFQQAEPRQGSVPESCIQG---------------FTGALEVENFPWNDAVVVVDNESPGESFSLQPEQEVVKYGSGIVIMQTSWDLEGGVAWRPRMSSSAERIHSEVEYISSNQNSYLDFDLSVRYEPG-PSGRRRTRSLSVDGPEVDSDGNLDWVSFGDEASLDPSIALD-NRDGTYRPAFIYSYEQESYEXXXXXXXXDFDXXXXEFIDSMSEEGESSSHTFXXXXSHQFGEELEGRTPQPGAVQSVTSIDIYVCLDLENNLAELRFLCDPENDGDAQCFAEAGEANTQALAIH---------------------------------------------------------------------------GMDMICAKECLPGQEGGVWCDIFGLDGCRMCTDDCTSICDGEAACSSCVNCREPTVAPSPSATDGSRGIPLETTSPTSA 1212 MI SA GR+ L AV LG QAG A AAPTC RVASQWAV+F AECT WFQQ R+GS PESCIQ FT A+ VENFPWND VV+VDNE+PG+ FSLQPEQ V+K+G+GIVIMQTSWD+E G W+PRMSSSAER+++EVEYI+S+ +SYLDFDLSVRYEP P R+LS D D D + ++ P +A D N D +Y PA+IYSYE ESY+ D D EFIDSM EE E S ++ + + GEE+ P P AVQSVTS+DIYVC D + NLAELRF CD ENDGDAQCFAEAGE N +AL IH GMDM C K CLPGQEGG+WCDIFGLDGCRMCTDDCTSICDGEA+CSSC+ C P P+PS TDGSRGIP+ + SPT A Sbjct: 1 MIMSATGRVAFLAAVLLGLQQAGLAFAAPTCERVASQWAVIFSAECTQWFQQIGSRRGSPPESCIQDPTWNHCMSNMRHDKQFTSAVLVENFPWNDDVVIVDNETPGDDFSLQPEQPVLKFGAGIVIMQTSWDMEDGSLWQPRMSSSAERVYAEVEYIASDNHSYLDFDLSVRYEPEHPPPGSLARALSEDDKAPDE---ADVEEILELSATPPPLAQDANGDLSYEPAYIYSYELESYDFSYNFELEDLDSYSYEFIDSMFEE-EISPYSQTYSYNFRGGEEVS--VPPPSAVQSVTSLDIYVCTDEDINLAELRFNCDLENDGDAQCFAEAGEPNVRALQIHVRMKKYIEFPRLKFWCDVVLLHLCLIFVISCVFYFLCVGSKCECEERHGTKLSHLDIRYRKSDTVTLAVTRQAQQGMDMYCDKVCLPGQEGGLWCDIFGLDGCRMCTDDCTSICDGEASCSSCILCGAPRAPPAPSPTDGSRGIPIMSGSPTMA 492 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig195.5798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig195.5798.1 >prot_L-elsbetiae_contig195.5798.1 ID=prot_L-elsbetiae_contig195.5798.1|Name=mRNA_L-elsbetiae_contig195.5798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=895bp MIHSAMGRLVSLTAVFLGQAGFASAAPTCTRVASQWAVVFPAECTTWFQQback to top mRNA from alignment at L-elsbetiae_contig195:12249..20425+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig195.5798.1 ID=mRNA_L-elsbetiae_contig195.5798.1|Name=mRNA_L-elsbetiae_contig195.5798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8177bp|location=Sequence derived from alignment at L-elsbetiae_contig195:12249..20425+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig195:12249..20425+ >mRNA_L-elsbetiae_contig195.5798.1 ID=mRNA_L-elsbetiae_contig195.5798.1|Name=mRNA_L-elsbetiae_contig195.5798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5370bp|location=Sequence derived from alignment at L-elsbetiae_contig195:12249..20425+ (Laminarionema elsbetiae ELsaHSoW15)back to top |