mRNA_L-elsbetiae_contig1948.5787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1948.5787.1
Unique NamemRNA_L-elsbetiae_contig1948.5787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1948.5787.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.920e-48
Identity = 135/261 (51.72%), Postives = 158/261 (60.54%), Query Frame = 1 
Query:    1 ASLAVDLARRRKIRREAARXXXXXXXXXXGAGDRNRGNQAASAMRPGPRLAAISSRSFEAMQSRALRLFQRSVSRFQVLTEDDFRRAADLNLLPD--------------GADEGAAGRGGD---------AGDVGGGD------VVEDQEQARNPTPSLSAPSPSPSSGRRPSRGSNKGEAGGSSDGAGRVGGKTTASRPSSAAAVPAAAAAILRVLRATVLVLGGCGLGALPSDKDLWDAVRPMLSDGSLRHRLRHFDRR 696
            ASL  DLARRRKI+REAA+          G   RN  NQ A +      +A ISSRSF+AMQSRALRLFQRSVSRFQ LTEDDF+R ADLNLLP+              G +EG A +  D         A  V  GD      + E++E  RNPTPSLS          + S G ++    GS   AG +G K      S  +A   AAA +LRV+RATVLVLGGCGLGALPSDK+LW+AV+PMLSDGSLRHR+RHFDRR
Sbjct:  558 ASLTKDLARRRKIQREAAKSTRA------GTRGRNLENQLAVSTTRSSGVAVISSRSFQAMQSRALRLFQRSVSRFQALTEDDFKRVADLNLLPEDVGVRKVAVDKAEEGENEGEALKKADSKAEVDEEAAPTVQEGDREEHAGIAEEKEAGRNPTPSLSXXXXXXXXXXQLSLGQSRS---GSDAEAGELGVKEVNPALSPPSATAPAAAVVLRVVRATVLVLGGCGLGALPSDKELWEAVKPMLSDGSLRHRVRHFDRR 809
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BLAST of mRNA_L-elsbetiae_contig1948.5787.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.220e-48
Identity = 140/262 (53.44%), Postives = 163/262 (62.21%), Query Frame = 1 
Query:    1 ASLAVDLARRRKIRREAARXXXXXXXXXXGAGDRNRGNQ-AASAMRPGPRLAAISSRSFEAMQSRALRLFQRSVSRFQVLTEDDFRRAADLNLLPD--------------GADEGAAGRGGDA-GDVGG--------GD------VVEDQEQARNPTPSLSAPSPSPSSGRRPSRGSNKGEAGGSSDGAGRVGGKTTASRPSSAAAVPAAAAAILRVLRATVLVLGGCGLGALPSDKDLWDAVRPMLSDGSLRHRLRHFDRR 696
            ASL  DLARR KI+REAA+          G   RN  NQ A S  RP   +AAISS+SF+AMQSRALRLFQRSVSRFQVLTEDDF+R ADLNL P+              G +EG A +  D+  +V G        GD      + E++E  RNPTPSLSA +      RR      +  +G  +D AG +G K      S  A    AAAA+LRV+RATVLVLGGCGLGALPSDKDLW AV+PMLSDGSLRHR+RHFDRR
Sbjct: 1022 ASLTKDLARRCKIQREAAKSTRA------GTRGRNLENQLAVSTTRPSG-VAAISSQSFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNLFPEDVGVRKMAVDKAEGGKNEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAEEKEAGRNPTPSLSAATSXXXXSRRQLT-LGQSHSGNDAD-AGELGVKEVNPASSPPATTIPAAAAVLRVVRATVLVLGGCGLGALPSDKDLWKAVKPMLSDGSLRHRVRHFDRR 1274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1948.5787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI3.920e-4851.72Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE5.220e-4853.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1948contigL-elsbetiae_contig1948:19890..20618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7FW96
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Exons2
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.211107-CDS-L-elsbetiae_contig1948:19889..203611622815808.211107-CDS-L-elsbetiae_contig1948:19889..20361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 19890..20361 +
1691683116.1077404-CDS-L-elsbetiae_contig1948:19889..203611691683116.1077404-CDS-L-elsbetiae_contig1948:19889..20361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 19890..20361 +
1622815808.2224014-CDS-L-elsbetiae_contig1948:20394..206181622815808.2224014-CDS-L-elsbetiae_contig1948:20394..20618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 20395..20618 +
1691683116.1228733-CDS-L-elsbetiae_contig1948:20394..206181691683116.1228733-CDS-L-elsbetiae_contig1948:20394..20618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 20395..20618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1948.5787.1prot_L-elsbetiae_contig1948.5787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1948 19890..20618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1948.5787.1

>prot_L-elsbetiae_contig1948.5787.1 ID=prot_L-elsbetiae_contig1948.5787.1|Name=mRNA_L-elsbetiae_contig1948.5787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
ASLAVDLARRRKIRREAARAARAARAAGAGAGDRNRGNQAASAMRPGPRL
AAISSRSFEAMQSRALRLFQRSVSRFQVLTEDDFRRAADLNLLPDGADEG
AAGRGGDAGDVGGGDVVEDQEQARNPTPSLSAPSPSPSSGRRPSRGSNKG
EAGGSSDGAGRVGGKTTASRPSSAAAVPAAAAAILRVLRATVLVLGGCGL
GALPSDKDLWDAVRPMLSDGSLRHRLRHFDRR
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mRNA from alignment at L-elsbetiae_contig1948:19890..20618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1948.5787.1 ID=mRNA_L-elsbetiae_contig1948.5787.1|Name=mRNA_L-elsbetiae_contig1948.5787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=729bp|location=Sequence derived from alignment at L-elsbetiae_contig1948:19890..20618+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGCTTGCGGTGGATCTGGCGCGGCGGCGCAAGATACGGCGGGAGGC
CGCGCGAGCCGCGCGGGCCGCTCGGGCCGCCGGCGCCGGCGCTGGCGACA
GAAACCGCGGCAACCAAGCGGCATCGGCAATGCGGCCGGGGCCGAGGCTG
GCGGCGATATCGTCGCGGTCCTTCGAGGCGATGCAGAGCAGAGCGCTGCG
TCTTTTCCAGCGGAGCGTGTCGCGCTTCCAGGTGCTGACCGAGGACGACT
TCAGGAGGGCTGCGGACCTCAACCTGCTCCCGGACGGCGCGGACGAGGGT
GCGGCGGGCCGTGGCGGCGACGCCGGCGATGTCGGCGGCGGCGATGTCGT
TGAGGACCAAGAGCAAGCGAGAAACCCTACCCCTAGCCTGTCCGCCCCGT
CCCCCTCCCCCTCCTCCGGCCGTCGTCCTTCTCGTGGCAGTAACAAAGGT
GAGGCCGGCGGCAGCTCTGACGGTGTAGGGCACCGCCTCGAAGAGACGGG
AGAAGGGGCCGGCAGAGTCGGGGGGAAGACGACCGCGTCGCGGCCCTCGT
CTGCCGCCGCCGTTCCCGCCGCCGCAGCAGCGATTCTACGCGTGCTGAGG
GCCACGGTGCTGGTGCTCGGTGGCTGCGGTCTCGGAGCTCTGCCTTCAGA
CAAGGACTTGTGGGACGCCGTGAGGCCGATGCTTTCGGACGGGAGCCTGA
GACACCGGCTCCGACACTTTGACCGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1948:19890..20618+

>mRNA_L-elsbetiae_contig1948.5787.1 ID=mRNA_L-elsbetiae_contig1948.5787.1|Name=mRNA_L-elsbetiae_contig1948.5787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig1948:19890..20618+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGCTTGCGGTGGATCTGGCGCGGCGGCGCAAGATACGGCGGGAGGC
CGCGCGAGCCGCGCGGGCCGCTCGGGCCGCCGGCGCCGGCGCTGGCGACA
GAAACCGCGGCAACCAAGCGGCATCGGCAATGCGGCCGGGGCCGAGGCTG
GCGGCGATATCGTCGCGGTCCTTCGAGGCGATGCAGAGCAGAGCGCTGCG
TCTTTTCCAGCGGAGCGTGTCGCGCTTCCAGGTGCTGACCGAGGACGACT
TCAGGAGGGCTGCGGACCTCAACCTGCTCCCGGACGGCGCGGACGAGGGT
GCGGCGGGCCGTGGCGGCGACGCCGGCGATGTCGGCGGCGGCGATGTCGT
TGAGGACCAAGAGCAAGCGAGAAACCCTACCCCTAGCCTGTCCGCCCCGT
CCCCCTCCCCCTCCTCCGGCCGTCGTCCTTCTCGTGGCAGTAACAAAGGT
GAGGCCGGCGGCAGCTCTGACGGCGTCGCTTGCGGTGGATCTGGCGCGGC
GGCGCAAGATACGGCGGGAGGCCGCGCGAGCCGCGCGGGCCGCTCGGGCC
GCCGGCGCCGGCGCTGGCGACAGAAACCGCGGCAACCAAGCGGCATCGGC
AATGCGGCCGGGGCCGAGGCTGGCGGCGATATCGTCGCGGTCCTTCGAGG
CGATGCAGAGCAGAGCGCTGCGTCTTTTCCAGCGGAGCGTGTCGCGCTTC
CAGGTGCTGACCGAGGACGACTTCAGGAGGGCTGCGGACCTCAACCTGCT
CCCGGACGGCGCGGACGAGGGTGCGGCGGGCCGTGGCGGCGACGCCGGCG
ATGTCGGCGGCGGCGATGTCGTTGAGGACCAAGAGCAAGCGAGAAACCCT
ACCCCTAGCCTGTCCGCCCCGTCCCCCTCCCCCTCCTCCGGCCGTCGTCC
TTCTCGTGGCAGTAACAAAGGTGAGGCCGGCGGCAGCTCTGACGGGGCCG
GCAGAGTCGGGGGGAAGACGACCGCGTCGCGGCCCTCGTCTGCCGCCGCC
GTTCCCGCCGCCGCAGCAGCGATTCTACGCGTGCTGAGGGCCACGGTGCT
GGTGCTCGGTGGCTGCGGTCTCGGAGCTCTGCCTTCAGACAAGGACTTGT
GGGACGCCGTGAGGCCGATGCTTTCGGACGGGAGCCTGAGACACCGGCTC
CGACACTTTGACCGGCGAGGGCCGGCAGAGTCGGGGGGAAGACGACCGCG
TCGCGGCCCTCGTCTGCCGCCGCCGTTCCCGCCGCCGCAGCAGCGATTCT
ACGCGTGCTGAGGGCCACGGTGCTGGTGCTCGGTGGCTGCGGTCTCGGAG
CTCTGCCTTCAGACAAGGACTTGTGGGACGCCGTGAGGCCGATGCTTTCG
GACGGGAGCCTGAGACACCGGCTCCGACACTTTGACCGGCGA
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