mRNA_L-elsbetiae_contig1946.5781.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1946.5781.1
Unique NamemRNA_L-elsbetiae_contig1946.5781.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1946.5781.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.050e-24
Identity = 94/196 (47.96%), Postives = 102/196 (52.04%), Query Frame = 1 
Query:  196 IEGGGWVAGGDGDGRAXXXXXXXXXXXXXXXXXXXXXXXXDDLDLQDMSLPVVIEPSSAAIGGRGWE-RSPGRNGNXXXX-GYRG--HHDREQRYSGGGAEVGGPGFGGPGAFDGPDRGGPRYGNGNGXX-----GGFRDDSRPRGAAPXXXXXXXXXXXXXXXXXXXXXXXXXRPSTTHVVGRESWEHPRGGRGQ 756
            +EGGGWVAGG  DGR                          DLD QD+SLPVVIEPS+  + GRGW+ RSPGRNG+     GYRG  HHDR   YSGGG          P  FDG DRGGPRYG    XX     GGFRD  R RG              XXXXX         R STTHVVGRESW+ PRGG G+
Sbjct:   87 VEGGGWVAGGPSDGRGGRFGGARGPGRRGNNKNNDNGG---DLDFQDLSLPVVIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDR---YSGGG----------PDGFDGSDRGGPRYGXXXXXXXGWGGGGFRDRVRLRGPPSPRYAGDAPPPQXXXXX---------RQSTTHVVGRESWDQPRGGSGR 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1946.5781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE2.050e-2447.96Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1946contigL-elsbetiae_contig1946:16086..17601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size981
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1946.5781.1prot_L-elsbetiae_contig1946.5781.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1946 16606..17593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.2362783-UTR-L-elsbetiae_contig1946:16085..164011622815807.2362783-UTR-L-elsbetiae_contig1946:16085..16401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 16086..16401 +
1691683115.3786318-UTR-L-elsbetiae_contig1946:16085..164011691683115.3786318-UTR-L-elsbetiae_contig1946:16085..16401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 16086..16401 +
1622815807.2523782-UTR-L-elsbetiae_contig1946:16491..166051622815807.2523782-UTR-L-elsbetiae_contig1946:16491..16605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 16492..16605 +
1691683115.3876357-UTR-L-elsbetiae_contig1946:16491..166051691683115.3876357-UTR-L-elsbetiae_contig1946:16491..16605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 16492..16605 +
1622815807.2899368-UTR-L-elsbetiae_contig1946:17593..176011622815807.2899368-UTR-L-elsbetiae_contig1946:17593..17601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 17594..17601 +
1691683115.4183722-UTR-L-elsbetiae_contig1946:17593..176011691683115.4183722-UTR-L-elsbetiae_contig1946:17593..17601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 17594..17601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.2644775-CDS-L-elsbetiae_contig1946:16605..168011622815807.2644775-CDS-L-elsbetiae_contig1946:16605..16801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 16606..16801 +
1691683115.39587-CDS-L-elsbetiae_contig1946:16605..168011691683115.39587-CDS-L-elsbetiae_contig1946:16605..16801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 16606..16801 +
1622815807.2767153-CDS-L-elsbetiae_contig1946:17246..175931622815807.2767153-CDS-L-elsbetiae_contig1946:17246..17593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 17247..17593 +
1691683115.4084404-CDS-L-elsbetiae_contig1946:17246..175931691683115.4084404-CDS-L-elsbetiae_contig1946:17246..17593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 17247..17593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1946.5781.1

>prot_L-elsbetiae_contig1946.5781.1 ID=prot_L-elsbetiae_contig1946.5781.1|Name=mRNA_L-elsbetiae_contig1946.5781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MATAGTMTESSGTAAAGQRSAGLDSADRARSTGLIGAGRGTATATATAAV
SGMIAGPAVPLHPAAAGTQGAPRSSRKEAGEGGGEEGGRPRRTSWAANRG
NIPAAVEANTAASITAAHRRPAGGAATTREAGGGGGGEGCPHTHTGFLTA
RTPAMVRRATTTTPRGTARRRRISLATTTP*
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mRNA from alignment at L-elsbetiae_contig1946:16086..17601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1946.5781.1 ID=mRNA_L-elsbetiae_contig1946.5781.1|Name=mRNA_L-elsbetiae_contig1946.5781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1516bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:16086..17601+ (Laminarionema elsbetiae ELsaHSoW15)
AAACCCAGTTCGCCAACCCGCAGAGTCCTCATCAACAACGACCGGCATGG
GTCTCCTGCGCCCAGCCGACGCCGGCATCTTTCACCGCCTCGTCCCTACC
CGTCGCCCCCCAACGGGGCCGGCGGCGGCGGGCCGCCGTGGAGGAACGGG
GGTGACGGAGGAGGGGGGGGCGGGGGGGGAGGGCCGAGAAGGAGGATAGA
AGGTGGAGGCTGGGTCGCAGGGGGGGACGGAGACGGCAGGGCGGGGGACT
TCCACGGCGGGGGGCCCCGCGGCGGCCCGGGCCGCGCCGGCCGCGGGGGG
AATGCCGGGGCCGGTGGTAGAAGGCCGGGTGGCGGTGGTGGCTCGAGTCC
TCCCCCCCAGAGAGGCTGGAACCATGCCCGCGGCGGCGGTGGTGGCGGCG
GCGCAGACGACCTCGACTTGCAGGACATGTCCTTGCCGGTGGTGATCGAG
CCGAGCAGCGCCGCCATCGGGGGCAGAGGGTGGGAGAGGAGCCCCGGCCG
AAACGGCAACGGCAACGGCAATGGCTACCGCGGGCACCATGACCGAGAGC
AGCGGTACAGCGGCGGCGGGGCAGAGGTCGGCGGGCCTGGATTCGGCGGA
CCGGGCGCGTTCGACGGGCCTGATAGGGGCGGGCCGAGGTACGGCAACGG
CAACGGCAACGGCGGCGGTTTCAGGGATGATAGCAGGCCCCGCGGTGCCG
CTCCACCCAGCAGCAGGTGCGGGTTGTAGTGTTGGGGTATTCGCCAGAAG
TGATGTTCTTGGAGAAGTATCACCGACAGAGAAGGTTGCTGATTTCATAT
GTTTGATGGTATTTATGTTACATATGTACTGCACTGTGCCGTACGTCGCA
AGGTTAGGGTTACGCCAATGGAAAAGAGGAGAGGGTTTTTTCATTGCAAC
TGGATCGCCGAGAGTGCGGCCTAAGGTCGTGGAAACAAGATGTGTACTAC
TGTATCGTTTCTTGGTTTGATACCACTCATTACTCTCGCCTACGCGCCAG
CACCTGACGCGTCTGAGCTTTCAGCTCTGAGGACGACGGCCTGTTGTTCC
CCCCCCCGACAGCCGACCGTTCGCTAATATCGCGCAGACGTTTTCCTTTG
GGGTTACCGCAGTGCATATGTCAGCGTCGCCCTCCTTCCCCCATGGCTCC
CCAACGTGAAGCAGGTACCCAGGGGGCGCCCCGCAGCAGCCGCAAAGAGG
CGGGGGAGGGGGGGGGGGAGGAGGGCGGCCGTCCACGACGCACGTCGTGG
GCCGCGAATCGTGGGAACATCCCCGCGGCGGTCGAGGCCAACACGGCGGC
CAGCATCACGGCGGCGCACCGCCGCCCGGCGGGTGGAGCGGCAACAACCC
GGGAGGCGGGGGGGGGGGGGGGGGGGGAGGGATGCCCACACACGCACACA
GGATTTCTCACCGCGAGGACTCCCGCAATGGTCCGCCGCGCTACCACGAC
CACGCCGCGGGGAACGGCCCGCCGCCGCCGAATCTCGCTCGCCACCACTA
CCCCATGAACGGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1946:16086..17601+

>mRNA_L-elsbetiae_contig1946.5781.1 ID=mRNA_L-elsbetiae_contig1946.5781.1|Name=mRNA_L-elsbetiae_contig1946.5781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:16086..17601+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTACCGCGGGCACCATGACCGAGAGCAGCGGTACAGCGGCGGCGGG
GCAGAGGTCGGCGGGCCTGGATTCGGCGGACCGGGCGCGTTCGACGGGCC
TGATAGGGGCGGGCCGAGGTACGGCAACGGCAACGGCAACGGCGGCGGTT
TCAGGGATGATAGCAGGCCCCGCGGTGCCGCTCCACCCAGCAGCAGATGG
CTACCGCGGGCACCATGACCGAGAGCAGCGGTACAGCGGCGGCGGGGCAG
AGGTCGGCGGGCCTGGATTCGGCGGACCGGGCGCGTTCGACGGGCCTGAT
AGGGGCGGGCCGAGGTACGGCAACGGCAACGGCAACGGCGGCGGTTTCAG
GGATGATAGCAGGCCCCGCGGTGCCGCTCCACCCAGCAGCAGCAGGTACC
CAGGGGGCGCCCCGCAGCAGCCGCAAAGAGGCGGGGGAGGGGGGGGGGGA
GGAGGGCGGCCGTCCACGACGCACGTCGTGGGCCGCGAATCGTGGGAACA
TCCCCGCGGCGGTCGAGGCCAACACGGCGGCCAGCATCACGGCGGCGCAC
CGCCGCCCGGCGGGTGGAGCGGCAACAACCCGGGAGGCGGGGGGGGGGGG
GGGGGGGGAGGGATGCCCACACACGCACACAGGATTTCTCACCGCGAGGA
CTCCCGCAATGGTCCGCCGCGCTACCACGACCACGCCGCGGGGAACGGCC
CGCCGCCGCCGAATCTCGCTCGCCACCACTACCCCATGACAGGTACCCAG
GGGGCGCCCCGCAGCAGCCGCAAAGAGGCGGGGGAGGGGGGGGGGGAGGA
GGGCGGCCGTCCACGACGCACGTCGTGGGCCGCGAATCGTGGGAACATCC
CCGCGGCGGTCGAGGCCAACACGGCGGCCAGCATCACGGCGGCGCACCGC
CGCCCGGCGGGTGGAGCGGCAACAACCCGGGAGGCGGGGGGGGGGGGGGG
GGGGGAGGGATGCCCACACACGCACACAGGATTTCTCACCGCGAGGACTC
CCGCAATGGTCCGCCGCGCTACCACGACCACGCCGCGGGGAACGGCCCGC
CGCCGCCGAATCTCGCTCGCCACCACTACCCCATGA
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