mRNA_L-elsbetiae_contig1946.5780.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1946.5780.1
Unique NamemRNA_L-elsbetiae_contig1946.5780.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1946.5780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1946contigL-elsbetiae_contig1946:14576..16196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.1878767-CDS-L-elsbetiae_contig1946:14575..147491622815807.1878767-CDS-L-elsbetiae_contig1946:14575..14749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 14576..14749 +
1691683115.35265-CDS-L-elsbetiae_contig1946:14575..147491691683115.35265-CDS-L-elsbetiae_contig1946:14575..14749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 14576..14749 +
1622815807.1998541-CDS-L-elsbetiae_contig1946:16093..161951622815807.1998541-CDS-L-elsbetiae_contig1946:16093..16195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 16094..16195 +
1691683115.3682563-CDS-L-elsbetiae_contig1946:16093..161951691683115.3682563-CDS-L-elsbetiae_contig1946:16093..16195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 16094..16195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1946.5780.1prot_L-elsbetiae_contig1946.5780.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1946 14576..16195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1946.5780.1

>prot_L-elsbetiae_contig1946.5780.1 ID=prot_L-elsbetiae_contig1946.5780.1|Name=mRNA_L-elsbetiae_contig1946.5780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
LASRFPPRFRRSPAPGTDCDIAIPLLRFGSSRKLCLRDFCRDVSSASSSR
GRRSAWQQFANPQSPHQQRPAWVSCAQPTPASFTASSLPVAP
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mRNA from alignment at L-elsbetiae_contig1946:14576..16196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1946.5780.1 ID=mRNA_L-elsbetiae_contig1946.5780.1|Name=mRNA_L-elsbetiae_contig1946.5780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1621bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:14576..16196+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCCTCCCGCTTCCCGCCAAGATTTCGGCGGTCGCCGGCACCTGGTAC
GGATTGCGATATCGCCATTCCATTGTTGAGGTTCGGTAGCTCTCGCAAAC
TCTGCTTGAGAGACTTTTGCCGCGATGTATCGTCGGCCTCAAGCAGCCGC
GGGAGGAGGAGCGCCTGGCAGCAGGTGGGTTTGGGTGTGTGTGTGCAAAA
CGCGTTACAGACGGCTACAGCTCTCTTCCACTCGGTATTTTTGTCGGTGG
GGGGGGAGTGTGTGCGTATGTAGGAGGCCATCTGTTCCCACGCGTGTCGG
GCCGGACTCCTTTTTGCGCAGTAAACACAGGGGGCCATTTTTTTCACGAG
TCACCCACCCACTGTTGTGTTGCTCTTTCTTATCTCTGCAGTCTGGCATT
TCTCATCCAAATGAATGTAGGGGTAACCGGTACCTGGCTGTAGATAGTTT
GTGTGTAGGACTCGGAGCTTGTGGATGGGGGGGCTGGCGATCAATATTTC
CGATCAAGTTCAGGTGCCTAGACTTGATCAAGCTGTGAAATGCAAAACTT
TTTTAAGCTTGGGGCTGGGTGGACGTGTCCCCCTCTTCTCGTTCTTCCGC
CGTTCCATGCGTAAAAGGTTTTCGTGCTCCCGCGGCGGCGCCATCGACGT
CGCGTGCCTCTGGAACTGCTGGATTGTAGAAACATAATATGGGTGTCATT
GTAGTCCTCCATCTATTTACATATGCATGCACATACATTACCAGCAGTCC
TCTATCCATATAAGGTCTGGGTGTAGCTATTAGAGAAGATAGAGTCCTTC
GCGGTCGAGCAAGCGGTTGTAAACGTTGTAACTTTCCTCGTGATGGTGTA
CACATGATACACGAGAGCGCAGCCGTAGTCTAGTGCAGAATGACTGCCCA
CTTTTTGTTGTAGCCTATGCTTGAGAGCGAAGTTAGTTACCCACGCCTTT
GAAAATGAATTATCCACGCTCGAACACGCGCTTTGGTGTTTGTTTCGTCT
GCGAGGACGTGCCCTGTGTGTTTGTTGCCAGCAGCAGCAGCGGCCCCGCG
CCTTGAAAAAGTAGGTTATACGTACATACCCTTGGGACCGGGATGATGTA
AAACTATATACAGAGCAGGCAGGGCGGGCGTGAGAGTTTGGCAGATTTAC
AGCAGTTCGTTAGGCCTTGGACCTCCTCCGCAGTGCATCAATTTCACTCC
TGCTACTGTCTGTGCACCCCCAAGGCTCTACATAAAATTTTTCACCCGTA
CATGGAACACCTCAGAAGAAAAATCCACACGAACCCGGGTGGACCACCCA
CAAACACCCTCTTTTTTTCCCACCCCACCGACACGGGCGGTGCTTCCTCT
CGCCAATGGCTTCACACCCAAGGCACAAACTTTCATATCCTTACTATGCT
GCAATATGTATGCGAGCCCACGGCTATTTTGCCGCCGATTTGTCTCTCTT
CGGAAGCTCCGATCTCTCGCCGGCCTGTCCCGCCGCCCGCCCACCCACGC
TTCCCGCTCGAAACCCAGTTCGCCAACCCGCAGAGTCCTCATCAACAACG
ACCGGCATGGGTCTCCTGCGCCCAGCCGACGCCGGCATCTTTCACCGCCT
CGTCCCTACCCGTCGCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1946:14576..16196+

>mRNA_L-elsbetiae_contig1946.5780.1 ID=mRNA_L-elsbetiae_contig1946.5780.1|Name=mRNA_L-elsbetiae_contig1946.5780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:14576..16196+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCCTCCCGCTTCCCGCCAAGATTTCGGCGGTCGCCGGCACCTGGTAC
GGATTGCGATATCGCCATTCCATTGTTGAGGTTCGGTAGCTCTCGCAAAC
TCTGCTTGAGAGACTTTTGCCGCGATGTATCGTCGGCCTCAAGCAGCCGC
GGGAGGAGGAGCGCCTGGCAGCAGCTTGCCTCCCGCTTCCCGCCAAGATT
TCGGCGGTCGCCGGCACCTGGTACGGATTGCGATATCGCCATTCCATTGT
TGAGGTTCGGTAGCTCTCGCAAACTCTGCTTGAGAGACTTTTGCCGCGAT
GTATCGTCGGCCTCAAGCAGCCGCGGGAGGAGGAGCGCCTGGCAGCAGTT
CGCCAACCCGCAGAGTCCTCATCAACAACGACCGGCATGGGTCTCCTGCG
CCCAGCCGACGCCGGCATCTTTCACCGCCTCGTCCCTACCCGTCGCCCCC
TTCGCCAACCCGCAGAGTCCTCATCAACAACGACCGGCATGGGTCTCCTG
CGCCCAGCCGACGCCGGCATCTTTCACCGCCTCGTCCCTACCCGTCGCCC
CC
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