mRNA_L-elsbetiae_contig1946.5778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1946.5778.1
Unique NamemRNA_L-elsbetiae_contig1946.5778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1946.5778.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-16
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = -2 
Query:   33 WNQKLRHELRQRRRQEQLKNGVPPSPRMFHGLMEAYARAGEWERALECLGDMVHGSRG 206
            W+Q LRH  RQRRRQE+L+NGVPPSPR+ HGLMEAY+RAGEWERA +CL DM     G
Sbjct:  217 WSQTLRH--RQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSG 272
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1946.5778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE1.800e-1670.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1946contigL-elsbetiae_contig1946:4363..4821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.3221562-UTR-L-elsbetiae_contig1946:4362..44701622815807.3221562-UTR-L-elsbetiae_contig1946:4362..4470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 4363..4470 +
1691683115.4270856-UTR-L-elsbetiae_contig1946:4362..44701691683115.4270856-UTR-L-elsbetiae_contig1946:4362..4470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1946 4363..4470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.3337126-CDS-L-elsbetiae_contig1946:4470..48211622815807.3337126-CDS-L-elsbetiae_contig1946:4470..4821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 4471..4821 +
1691683115.4383132-CDS-L-elsbetiae_contig1946:4470..48211691683115.4383132-CDS-L-elsbetiae_contig1946:4470..4821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1946 4471..4821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1946.5778.1prot_L-elsbetiae_contig1946.5778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1946 4471..4821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1946.5778.1

>prot_L-elsbetiae_contig1946.5778.1 ID=prot_L-elsbetiae_contig1946.5778.1|Name=mRNA_L-elsbetiae_contig1946.5778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MSPWNILGDGGTPFLSCSCRRLCRSSCRSFWFHDSPPPPAAATAAATVAV
EEEGSPAAGEGADAALPSPSGVAAVAPLTPSSSADLAAVVAGPLAASATA
SSDASSVAAVGDTTAPS
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mRNA from alignment at L-elsbetiae_contig1946:4363..4821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1946.5778.1 ID=mRNA_L-elsbetiae_contig1946.5778.1|Name=mRNA_L-elsbetiae_contig1946.5778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=459bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:4363..4821+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTTCCCGCCGGCTGCTTCTCTTCCGGAGAGCCCCTCGAGCCGTGCAC
CATGTCGCCCAGGCACTCCAGCGCGCGCTCCCACTCCCCCGCTCTCGCGT
AGGCCTCCATGAGCCCGTGGAACATCCTGGGGGACGGCGGGACGCCGTTC
TTGAGCTGCTCCTGCCGCCGTCTCTGTCGGAGCTCGTGCCGGAGCTTCTG
GTTCCACGACTCTCCCCCTCCTCCCGCCGCCGCCACCGCCGCCGCCACCG
TGGCGGTGGAGGAGGAAGGATCTCCTGCGGCCGGTGAGGGAGCTGACGCC
GCGCTGCCGTCGCCGTCCGGCGTCGCCGCAGTGGCGCCATTGACACCGTC
CTCATCTGCTGATCTCGCGGCCGTTGTTGCCGGGCCTCTGGCGGCCTCTG
CCACCGCGTCCTCGGACGCTTCTTCTGTCGCCGCTGTCGGTGATACAACC
GCTCCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1946:4363..4821+

>mRNA_L-elsbetiae_contig1946.5778.1 ID=mRNA_L-elsbetiae_contig1946.5778.1|Name=mRNA_L-elsbetiae_contig1946.5778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1946:4363..4821+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCCGTGGAACATCCTGGGGGACGGCGGGACGCCGTTCTTGAGCTG
CTCCTGCCGCCGTCTCTGTCGGAGCTCGTGCCGGAGCTTCTGGTTCCACG
ACTCTCCCCCTCCTCCCGCCGCCGCCACCGCCGCCGCCACCGTGGCGGTG
GAGGAGGAAGGATCTCCTGCGGCCGGTGAGGGAGCTGACGCCGCGCTGCC
GTCGCCGTCCGGCGTCGCCGCAGTGGCGCCATTGACACCGTCCTCATCTG
CTGATCTCGCGGCCGTTGTTGCCGGGCCTCTGGCGGCCTCTGCCACCGCG
TCCTCGGACGCTTCTTCTGTCGCCGCTGTCGGTGATACAACCGCTCCCTC
CATGAGCCCGTGGAACATCCTGGGGGACGGCGGGACGCCGTTCTTGAGCT
GCTCCTGCCGCCGTCTCTGTCGGAGCTCGTGCCGGAGCTTCTGGTTCCAC
GACTCTCCCCCTCCTCCCGCCGCCGCCACCGCCGCCGCCACCGTGGCGGT
GGAGGAGGAAGGATCTCCTGCGGCCGGTGAGGGAGCTGACGCCGCGCTGC
CGTCGCCGTCCGGCGTCGCCGCAGTGGCGCCATTGACACCGTCCTCATCT
GCTGATCTCGCGGCCGTTGTTGCCGGGCCTCTGGCGGCCTCTGCCACCGC
GTCCTCGGACGCTTCTTCTGTCGCCGCTGTCGGTGATACAACCGCTCCCT
CC
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