mRNA_L-elsbetiae_contig1944.5774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1944.5774.1
Unique NamemRNA_L-elsbetiae_contig1944.5774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1944.5774.1 vs. uniprot
Match: A0A6H5L145_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L145_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.100e-22
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 2 
Query:  161 DYLRDETSQLVALRRVLSAARLIQASGPESSNLVNDVGLRDQVEGFVSKSKDGEAKGAAAELMVLLG 361
            D L+DETSQLVALRRVLS  RL++ASG E+++L+NDVGLRDQVEGF+SK+K+GEAK AAAEL+ LLG
Sbjct:  436 DGLQDETSQLVALRRVLSVGRLVRASGSEAASLINDVGLRDQVEGFLSKAKEGEAKNAAAELLRLLG 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1944.5774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L145_9PHAE3.100e-2274.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1944contigL-elsbetiae_contig1944:17931..20970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size385
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1944.5774.1prot_L-elsbetiae_contig1944.5774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1944 18877..20967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.776853-UTR-L-elsbetiae_contig1944:17930..180291622815806.776853-UTR-L-elsbetiae_contig1944:17930..18029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 17931..18029 -
1691683115.0893116-UTR-L-elsbetiae_contig1944:17930..180291691683115.0893116-UTR-L-elsbetiae_contig1944:17930..18029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 17931..18029 -
1622815806.7936914-UTR-L-elsbetiae_contig1944:18454..185531622815806.7936914-UTR-L-elsbetiae_contig1944:18454..18553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 18455..18553 -
1691683115.0993884-UTR-L-elsbetiae_contig1944:18454..185531691683115.0993884-UTR-L-elsbetiae_contig1944:18454..18553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 18455..18553 -
1622815806.8111289-UTR-L-elsbetiae_contig1944:18821..188761622815806.8111289-UTR-L-elsbetiae_contig1944:18821..18876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 18822..18876 -
1691683115.1092687-UTR-L-elsbetiae_contig1944:18821..188761691683115.1092687-UTR-L-elsbetiae_contig1944:18821..18876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 18822..18876 -
1622815806.851826-UTR-L-elsbetiae_contig1944:20967..209701622815806.851826-UTR-L-elsbetiae_contig1944:20967..20970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 20968..20970 -
1691683115.1472764-UTR-L-elsbetiae_contig1944:20967..209701691683115.1472764-UTR-L-elsbetiae_contig1944:20967..20970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1944 20968..20970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.8248963-CDS-L-elsbetiae_contig1944:18876..189111622815806.8248963-CDS-L-elsbetiae_contig1944:18876..18911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1944 18877..18911 -
1691683115.1218197-CDS-L-elsbetiae_contig1944:18876..189111691683115.1218197-CDS-L-elsbetiae_contig1944:18876..18911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1944 18877..18911 -
1622815806.8385549-CDS-L-elsbetiae_contig1944:20873..209671622815806.8385549-CDS-L-elsbetiae_contig1944:20873..20967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1944 20874..20967 -
1691683115.1344254-CDS-L-elsbetiae_contig1944:20873..209671691683115.1344254-CDS-L-elsbetiae_contig1944:20873..20967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1944 20874..20967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1944.5774.1

>prot_L-elsbetiae_contig1944.5774.1 ID=prot_L-elsbetiae_contig1944.5774.1|Name=mRNA_L-elsbetiae_contig1944.5774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=43bp
MPHQVQLALYDDLSRGMSKAISMAILGKQIDEPSSWRWFWLA*
back to top

mRNA from alignment at L-elsbetiae_contig1944:17931..20970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1944.5774.1 ID=mRNA_L-elsbetiae_contig1944.5774.1|Name=mRNA_L-elsbetiae_contig1944.5774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3040bp|location=Sequence derived from alignment at L-elsbetiae_contig1944:17931..20970- (Laminarionema elsbetiae ELsaHSoW15)
ACGATGCCTCATCAAGTCCAGCTGGCGCTCTACGATGATCTCAGCAGAGG
AATGTCAAAGGCAATAAGCATGGCTATCCTCGGGAAACAAATTGACGGTG
AGATTCATTTGTTAGGCAGTAGGCAGTTCAGAGAGAAAATGAGACTGGCA
GATAGAGCGAAAAGAGTATTTATTTTTTCGCGACACAGATCTAGATAGAC
TATCTATCTAACTAGTAAAGTAAGGGCTTCGGACGCGGGGGCCTACCGCC
CCCCCCGTCCTTCGGTTTCTGATAGTTAATAGGGAGGGTTCGATGATGTC
GGGTTACCCAGGCTACCAAGGGTACCATCGGTGAGAGGAACAGGAACTGA
GCGTGTAGCAGTACATACGACTTTTTGTGACATTGAGGCGGAAAGTCGTC
GGGTAATTATATAATATAGTGTGTTTTTTTTTATTAATTAATTAATTATT
TGGTTTTGGGCAGGCAATAATATGGAGGGTGTTGTAATTAATTCGGAGGA
GTGCCGTCGCTCGCCTCCGCTTGCACGGAAAAAACGGCATGTAAAGTGCT
AACAAGGATATCCGAACTCCAGTCGGGCAAACGAAAGAATTCATAGTTAT
CCCCTATACCACGCGCACTTCGTTACAGAGTAGCGTGAAAAACTCTCGTA
TAATACCAAGAAAGACAGAAATCCCTGCATCCAGGCCCCATATAGCAGTG
CAGCCCGGCGGGTGCCTACTGGCATTTTTTATAACCTGCGCTGAGGAACA
GTTCGATCTGGGTTCCTCTCACTTGTCAACCATGTGGTTTCCAGCAGTTG
CACGCAGAGCCAAATTTAATTAATCCATACAAATCCAAGTCAATAAGCAT
TTTCCGACTTTTAGGAGACGATATGGTCGCGAATTTAGTTTGAACCCTCC
TCTTGCATGAAATCGATCGTAGAAAATCACTATCACCCGAAGGAAGACTT
GGTTGGGCTGACGCGACCCATGAGAAAAAATCTAGCAATTCACGGCCCGT
GGTCACAAAAGTGCTGGAGCCATCAAAATATCCTAAGGCCATTTCTTACA
CGATCGAAAAATGAAATCGAAAATCGTAAAAGTGTTACGGAGTACCTAGC
TAGTTCCGTGGGTTCAAAGTAAAAGGCGAGGGTTCGGCTCCTTGCGGTTC
CGTACCCAGGTCTCGTTCTTGTATTAACGTTCCTCAGCTGAAGAGAGTGG
GGCATCTAGCGGCCCAATATGTGGCCCCGTGGACCGTACAGGTACCACAC
GCCTAACAATTCCCTATCCATGGGGGTGCCTATCGCACTCCGTAACATAA
GGCCGTTTCTTATAGGGCAGAAAACCAGAATCGAAAAAGTTCACACATAG
GATGGATCATGATCTAGATGATCTATGGGTTGTAGATCAAGAGCTGCAAA
CATGTAGATACAGATGATCTATGGATTATAGATCAAGAGCGGCAAACATG
TGCCAGATCTATCTGTGTCTATAGATCAAGAGCGGCAAACATGTACAGAT
CTATCTGTGTCTAGATCAAGAGCGGCAAACGCGTACAGATGATATATACT
CGGAGTAGAGAATTATAGATCAAGAGCGGCAAACATGTATGGTACAGATC
TATGGCTGTAGATTTTGGTGATCCGCCACCGAATTGATCTAGATCGATCT
AAAGTGATCTGATCTATCCTATGTGTGAAAAAGTTGCACTTCTGTGAATG
CCACTGGGCGCCAATTACGTGAATACTCAGCAGCCAGCAGAAAACACCCG
AGCACCGCCCAGCTCCCGGCCCGTAGGGCACTGATCGCAATCGGAGCACT
CCAAGCGTGTGCTCTATGGTGATATCTCTCGGCGTGCCAGTCGTGTGGGG
CATGGGCGTTGCGTGTGGCGAGAGCTTTGTGTCGGAGTAGAATCCGATTT
GGGTTTTTCGACCTGGCGGTGTGATCGGAAATGTAGATATTTATTCTAGA
TATATATGCCAATAGCCTGAAACGGGCTCAAATCGGGGATGTATGTGGGC
ACGAATACATCCGTGTTTTCATGACACATCCACTTTGTTTTTGCTATCCA
AATTTCCAGAGCCGAGTTCTTGGCGCTGGTTCTGGTTAGCCTGATGGTCC
TGCACAAGGCGGAGGGTATTGAGATTATCTGCGAGACGAGACCTCACAGG
TGCGTGCGTGTTTGTGTGTTTGTCTTTTTATTTTGGCAACAGACCGCGCT
AACTTGCTTGCTGGCAATGCAACTTCATCGATGTGAATGGACCAACGGCC
TCTGCGTTTTCCTATTTTTTCGTTTTCATCGACTGAGCTAACCCTATTTG
TCTAGACGTCGTGAGGGTTAGAAATACTTCAGTGCGCGTGTTCGTGCTCA
TCTTGCCGTGGCCACCCCGCATTGATTCTGGGTGCCTTGATTTACGTCGG
CTGTGGTGCTGCTGCAGTTGGTAGCGCTTCGACGAGTTTTGTCGGCGGCC
CGGCTGATCCAAGCATCCGGGCCGGAATCGTCGAATCTCGTCAACGACGT
CGGCTTGCGCGACCAGGTGAATAAGAGTAGCACTCAATCTTTGTTTGGGG
GTTTCCTATACAGAATTCCCCCAGAATGGAAGGGGCGTTGCCAATTCGAT
GAAGTTCTTTGTGCGCCGCCAGCCACTTTTCGTGTGCGAATCAGCGAAAC
ATCCCGTCACTCCGATGCCTCCTTTTTATCCAAACGCTTGAAAATTCCGA
CTTCGCACCATTAGACCCTGTACATAGCATGCATGTCCACATGATGAGCG
GGTGTCCTTGTGTGTTGGAGACCGAAATAATCGAGAGGTTTCGTGCGACG
CCGTGATGATTTTTCTGCCGCAACTGTTGCTGCTGCATGTTCGTGAACTT
AATTAACTCTACGTACTACCGCTGTTCGTCGCCATCAGCTGACCCTTGTG
TATGTCACTGTCCTCTGCCCTCCCCTCTCTTCGCCGGGCAGGTGGAAGGT
TTTGTGAGCAAGTCCAAAGACGGAGAAGCGAAGGGCGCCGCAGCAGAGCT
CATGGTTTTGCTGGGAAGCGTCCTAAACGCTTGAGACAGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1944:17931..20970-

>mRNA_L-elsbetiae_contig1944.5774.1 ID=mRNA_L-elsbetiae_contig1944.5774.1|Name=mRNA_L-elsbetiae_contig1944.5774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig1944:17931..20970- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCATCAAGTCCAGCTGGCGCTCTACGATGATCTCAGCAGAGGAAT
GTCAAAGGCAATAAGCATGGCTATCCTCGGGAAACAAATTGACGATGCCT
CATCAAGTCCAGCTGGCGCTCTACGATGATCTCAGCAGAGGAATGTCAAA
GGCAATAAGCATGGCTATCCTCGGGAAACAAATTGACGAGCCGAGTTCTT
GGCGCTGGTTCTGGTTAGCCTGAAGCCGAGTTCTTGGCGCTGGTTCTGGT
TAGCCTGA
back to top