mRNA_L-elsbetiae_contig1944.5773.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1944.5773.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI) HSP 1 Score: 359 bits (922), Expect = 4.160e-107 Identity = 356/608 (58.55%), Postives = 410/608 (67.43%), Query Frame = 1 Query: 1 DVKSDGRISVAEVVACVEELDYIVDVPLEDLVRSVVPAAIEVDRLSLNDAIKVASAAKAQDMGSAAPKAPGIGREDSLEELEKSFIKQVRSGEIAADIVEEERQAPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGPEGFASAPSPCVAAVGLDIPQRRRSIA----VPFSPRNTARGTVQRGGSLSAI--SGPEP-VVVDDFPKRRSSVARPGGGSLAGLQAES--SPGTGVYDDDVSTLPATPELLRQSSEMELLESAGSLSVEPVEASGVPRKRQSFVVSKSWLEAAAQESAKALEVKKLAEAXXXXXXXXXXXXXXXXXX---VAACLSRLTDQVEHNSAIAQAKEEADKRTRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVKKEAEARRAAEMKAAEAAERAEEAARA---------------------------------------RQEEDKIKEDARRTLQAEAELLRSKLQEAGEEAAERXXXXXXXXXXXXXXXLRXXXXXVEREARLVEEAXXXXXXXXXXXXXXXXXXXSWEKKFQALQKEREEEAQRAKEELTRAVEEAKEFEQAKNLALRAAEER 1671 DVKSDGRI+VA+++AC++++D+I++ +DL+RSVVPAA++VDRLSLNDAIKVA+AAK Q+ GSA P+ PGIGRE SL ELE SF K++ GEI AD +EEE + P++ XXXXXXXXXXXXXXXXXXXXXXXXXX EGP G SAP P VAAVGL +P RRRSIA VP SP TA RG S S+ G EP VVVD FPKRR SVA G GSL G++A+S PG G DDD STLPA+PE+L +SEMELL+SAGSL VEPV S VPR+R S VS+SW EAAAQES KALE ++L EAXXXXXXXXXXXXXXXXX VA CLS L D+V+H + IA+A+EEA++R R AA X XXXXXXXXXX RL + AE R AAE +AAEAAERAEEA R KE ARR LQAEAE LRSKLQEAGEEAA XXXXXXXXXXXXXXX R XX XXXXXXXXXXXXX WE+KFQALQ+ERE+EAQRA+ E+ RAVEEA+EFE++K LALRAAE R Sbjct: 157 DVKSDGRINVAKLMACLKQMDFILEGSPKDLIRSVVPAAMDVDRLSLNDAIKVATAAKTQEQGSAPPQRPGIGREGSLAELESSFNKRIMLGEITADAIEEEPRVPSVGXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPAGIESAPPPAVAAVGLAVPVRRRSIAGNHPVPSSPSTTAPWPTSRGSSFSSAHGQGQEPEVVVDKFPKRRMSVASSGSGSLKGIRADSVPGPGGGRGDDDDSTLPASPEMLTMTSEMELLDSAGSLGVEPVITSAVPRRR-SITVSQSWKEAAAQESVKALEAERLVEAXXXXXXXXXXXXXXXXXAEKVVAECLSSLADKVQHRADIAEAREEAEQRARDAALEVERAEAAAXRVEVETALRLAVXXXXXXXXXXSAREEADRLAAEAAEGRAAAETRAAEAAERAEEALRLVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGARRALQAEAEALRSKLQEAGEEAAXXXXXXXXXXXXXXXXXXRLMEXXXXXXXXXXXXXXXXXXXXXXXXXXARLEALVWEEKFQALQREREQEAQRARXEMERAVEEAREFERSKALALRAAEAR 763
BLAST of mRNA_L-elsbetiae_contig1944.5773.1 vs. uniprot
Match: A0A6H5L292_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L292_9PHAE) HSP 1 Score: 176 bits (447), Expect = 1.200e-46 Identity = 143/270 (52.96%), Postives = 171/270 (63.33%), Query Frame = 1 Query: 58 LDYIVDVPLEDLVRSVVPAAIEVDRLSLNDAIKVASAAKAQDMGSAAPKAPGIGREDSLEELEKSFIKQVRSGEIAADIVEEERQAPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGPEGFASAPSPCVAAVGLDIPQRRRSIAVPFSPRNTARGTVQRGGSLSAISGPEP-VVVDDFPKRRSSVARPGGGSLAGLQAESSPGT--GVYDDDVSTLPATPELLRQSSEMELLESAGSLSVEPVEASGVPRKRQSFVVSKSWLEAAAQ 858 +D+I++ EDL+RSVVPAA++VDRLSLNDAIKVA+AAK Q+ GSA P+ PGIGRE SL ELE SF KQ+ GEI AD +EEE + P++ XXXXXXXXXXXXXXX +PC+ IP TA G+ G G EP VVVD FPKRR S+A GGGSL GL+A+S PG STLPA+PE+L+ +SEMELL+SAGSL VEPV S VP KR+S VS+SW EAAAQ Sbjct: 1 MDFILEGSPEDLIRSVVPAAMDVDRLSLNDAIKVATAAKTQEQGSAPPQRPGIGREGSLAELESSFNKQIMLGEITADAIEEEPRVPSVGXXXXXXXXXXXXXXXNQ---------------------APCI------IP--------------TAGGSSFSSGHGQ---GQEPEVVVDKFPKRRMSMASSGGGSLKGLRADSVPGPWXXXXXXXXSTLPASPEMLKMTSEMELLDSAGSLGVEPVITSAVP-KRRSITVSQSWKEAAAQ 225
BLAST of mRNA_L-elsbetiae_contig1944.5773.1 vs. uniprot
Match: A0A6H5L1F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F5_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.550e-10 Identity = 122/261 (46.74%), Postives = 141/261 (54.02%), Query Frame = 1 Query: 1006 IAQAKEEADKRTRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVKKEAEARRAAEMKAAEAAERAEEAAR---ARQEEDKIKED------------------------------------ARRTLQAEAELLRSKLQEAGEEAAERXXXXXXXXXXXXXXXLRXXXXXVEREARLVEEAXXXXXXXXXXXXXXXXXXXSWEKKFQALQKEREEEAQRAKEELTRAVEEAKEFEQAKNLALRAAEER 1671 +A+A+EEA++R R AA RL + E R AAE +AAEAAERAEEA R A +E+ + K ARR LQAEAE LRSKLQEAGEEAAE XXXXXXXXXXXXXXX XXXXX XXXXXXXXXXXXXXX WE+KFQALQ+ERE++AQRA+EE+ RAVEEA+ FE++K LAL AAE R Sbjct: 1 MAEAREEAEQRARHAALEVERAEAAAARAEVETALRLAVESLEREAAVASAREEADRLTAEAVEGRAAAETRAAEAAERAEEALRLVAAAEEDARAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRALQAEAEALRSKLQEAGEEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEALGWEEKFQALQREREQDAQRAREEMERAVEEARAFERSKALALPAAEAR 261 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1944.5773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1944.5773.1 >prot_L-elsbetiae_contig1944.5773.1 ID=prot_L-elsbetiae_contig1944.5773.1|Name=mRNA_L-elsbetiae_contig1944.5773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=585bp MGSAAPKAPGIGREDSLEELEKSFIKQVRSGEIAADIVEEERQAPTLGLGback to top mRNA from alignment at L-elsbetiae_contig1944:7622..16815+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1944.5773.1 ID=mRNA_L-elsbetiae_contig1944.5773.1|Name=mRNA_L-elsbetiae_contig1944.5773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9194bp|location=Sequence derived from alignment at L-elsbetiae_contig1944:7622..16815+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1944:7622..16815+ >mRNA_L-elsbetiae_contig1944.5773.1 ID=mRNA_L-elsbetiae_contig1944.5773.1|Name=mRNA_L-elsbetiae_contig1944.5773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3510bp|location=Sequence derived from alignment at L-elsbetiae_contig1944:7622..16815+ (Laminarionema elsbetiae ELsaHSoW15)back to top |