mRNA_L-elsbetiae_contig19437.5772.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19437.5772.1
Unique NamemRNA_L-elsbetiae_contig19437.5772.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19437.5772.1 vs. uniprot
Match: D8LST8_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST8_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.080e-42
Identity = 92/153 (60.13%), Postives = 99/153 (64.71%), Query Frame = 1 
Query:   28 CNFDLWKVLTGSQAIRQADLRAGFGVAAVGGKAAERLEPKEVAELVRVSPRPMEIVFRDPELLGRRLQAEADRKAEEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SSRELRVTQAGKKPAVCGTKTKAGDLIEFR 468
            C   + +VLTGSQAIRQA+LRAGFGVAAVGGK AERLEPKEVAEL+R+SPRPMEIVFRDPELLGRRLQAEADRKAE  +                                            SS ELRVTQ GKKP VCGT+TKAGDLIEFR
Sbjct:  201 CRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKRRKQKAAADAASPETAAPDTGDSATATTAVDPRSGSVGNGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFR 353
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19437.5772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LST8_ECTSI1.080e-4260.13Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19437contigL-elsbetiae_contig19437:700..2491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D8LST8
KEGG koko:K09569
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048856,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0545@1,KOG0549@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-15_002640.1
Exons3
Model size468
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19437.5772.1prot_L-elsbetiae_contig19437.5772.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19437 700..2491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.5666223-CDS-L-elsbetiae_contig19437:699..8991622815806.5666223-CDS-L-elsbetiae_contig19437:699..899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 700..899 +
1691683114.9232483-CDS-L-elsbetiae_contig19437:699..8991691683114.9232483-CDS-L-elsbetiae_contig19437:699..899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 700..899 +
1622815806.5770226-CDS-L-elsbetiae_contig19437:1443..14801622815806.5770226-CDS-L-elsbetiae_contig19437:1443..1480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 1444..1480 +
1691683114.9335194-CDS-L-elsbetiae_contig19437:1443..14801691683114.9335194-CDS-L-elsbetiae_contig19437:1443..1480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 1444..1480 +
1622815806.5862474-CDS-L-elsbetiae_contig19437:2260..24911622815806.5862474-CDS-L-elsbetiae_contig19437:2260..2491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 2261..2491 +
1691683114.9447773-CDS-L-elsbetiae_contig19437:2260..24911691683114.9447773-CDS-L-elsbetiae_contig19437:2260..2491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19437 2261..2491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19437.5772.1

>prot_L-elsbetiae_contig19437.5772.1 ID=prot_L-elsbetiae_contig19437.5772.1|Name=mRNA_L-elsbetiae_contig19437.5772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MPPPPTPSQCNFDLWKVLTGSQAIRQADLRAGFGVAAVGGKAAERLEPKE
VAELVRVSPRPMEIVFRDPELLGRRLQAEADRKAEEARRRKRKAADEAAS
PETAASATDPRSGSSVGDGGGGSGGGSSRELRVTQAGKKPAVCGTKTKAG
DLIEFR
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mRNA from alignment at L-elsbetiae_contig19437:700..2491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19437.5772.1 ID=mRNA_L-elsbetiae_contig19437.5772.1|Name=mRNA_L-elsbetiae_contig19437.5772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1792bp|location=Sequence derived from alignment at L-elsbetiae_contig19437:700..2491+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCGCCACCCACCCCCTCGCAATGCAATTTTGACCTTTGGAAGGT
GCTGACGGGTTCTCAGGCGATACGCCAGGCGGACCTCCGGGCCGGGTTCG
GGGTCGCCGCCGTCGGCGGGAAGGCGGCGGAGAGGCTCGAGCCGAAGGAG
GTCGCGGAGCTCGTCAGGGTGTCGCCCAGGCCCATGGAGATCGTCTTCAG
GTTTGCTTGTTTTTTCGTTTTTTCGCTGTTGCCTTTGCTGTTGCCTTTGC
TGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CAGTGATGTTATGTTCTCGTTGTTGGTTCGCTGTTGCTGTTGCTGTTGCT
GTTGCTGTTCTGTTGTTGCTGATACACACACGTCATGCCGCCAACAAAGG
AGGTGCGTGCAAGCCGTGGGCCGGTCGATGAAGCCTTCCGGACAAAAGGT
CACGGAGCGTTCACCTGGCTGGGTTTTGTTGGTGGGGCCCGGCACGGCCG
ATGCTTGTTTAGAACCTAACCGCTCGGGAGACACGATCGAGACTTCCGTA
CATGACCGTTCTCTGTTTGGAGACCGCGCTTGCTACAGGTGTGTGGCAGC
AACCATGGCGCTCTCGTCACCACCCCTTTCCCTCGATCCCTGCCACCCCT
ATCTGCGCGTGCGGTGCTGCGCCGTGCGTGTGCGTGTGCGTCTGCGTGTG
CGTGCGTGTGTGTGCGTGTGCGTGTGTAACCTGCCCGTTTTCAGGGATCC
CGAGTTGCTCGGTCGAAGACTCCAGGCCGAGGTGCGTGGGTTTCTTCAGC
ACTCGTGTCTGCTGCGGTGCTACGTTTCGTCGTCTGTCGTGGTACTTTGC
GGCCGCCTCCCCTCTCTCGGCACTTGGCTATGGGGCCGTCGATGGATTCC
TCCGTCTTGGGGGTGCTATGGTGTAGTATCTAGATTCTAGATAGGTATGT
TCGGGGGTTGGTTTTGTCGGGCCGACGTGAACGATGGAGCGAACAAAGAA
AGCCTGCAAGGAACGCCTTTCGTCACTAAACCTCGGCTCGTGTAGTTTTC
ATACATGTATCTAAGTGGACTGCCTTCGCGAGAAAAAACGGGGAATATTG
GTTTATATGTGAAATAGAGTTGTAGGGGTTCCGTAACCCTAACCCTAACC
CTAACCACCGACCCCCCAGACTTCCCCCGATTCCATACTTCATCCCATAT
GTTTCGCCGAACAAAAACCTGCGTAGACTACCCATCTACGTGCACACGCT
CGCGATGAAAACATCTAAGGCAGGCACCGCGGGAGGGGGACCAACTCCCC
CCGTCCCATGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAA
GGGGGCCAGTGGGGCAGGCAGACGACAAGTATGCCTATGATGGGAGGAGA
AAAAAAAATAAACGCGCACGCCTCGACAAGAATGGATGTCGGTTGCGTTC
GTTTTAGATAGATACATACATACATACATATGGTGTCAAATTTATCCGCT
TGATTCTGTTTTTTTTTTTTTTTTACCTAGATTCCTTCCTCTCTCCCTTG
CCTCGCGGCAGGCGGACAGAAAAGCAGAGGAAGCTAGGCGGAGAAAGCGG
AAGGCCGCCGATGAAGCTGCGTCTCCGGAGACGGCGGCGTCCGCCACGGA
CCCTCGCAGCGGCAGCAGCGTTGGCGACGGCGGCGGCGGCAGCGGTGGCG
GTTCGTCGAGGGAGCTGAGGGTGACGCAGGCCGGCAAGAAGCCGGCGGTG
TGCGGTACCAAGACCAAGGCTGGCGACCTGATCGAGTTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19437:700..2491+

>mRNA_L-elsbetiae_contig19437.5772.1 ID=mRNA_L-elsbetiae_contig19437.5772.1|Name=mRNA_L-elsbetiae_contig19437.5772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig19437:700..2491+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCGCCACCCACCCCCTCGCAATGCAATTTTGACCTTTGGAAGGT
GCTGACGGGTTCTCAGGCGATACGCCAGGCGGACCTCCGGGCCGGGTTCG
GGGTCGCCGCCGTCGGCGGGAAGGCGGCGGAGAGGCTCGAGCCGAAGGAG
GTCGCGGAGCTCGTCAGGGTGTCGCCCAGGCCCATGGAGATCGTCTTCAG
ATGCCGCCGCCACCCACCCCCTCGCAATGCAATTTTGACCTTTGGAAGGT
GCTGACGGGTTCTCAGGCGATACGCCAGGCGGACCTCCGGGCCGGGTTCG
GGGTCGCCGCCGTCGGCGGGAAGGCGGCGGAGAGGCTCGAGCCGAAGGAG
GTCGCGGAGCTCGTCAGGGTGTCGCCCAGGCCCATGGAGATCGTCTTCAG
GGATCCCGAGTTGCTCGGTCGAAGACTCCAGGCCGAGGGATCCCGAGTTG
CTCGGTCGAAGACTCCAGGCCGAGGCGGACAGAAAAGCAGAGGAAGCTAG
GCGGAGAAAGCGGAAGGCCGCCGATGAAGCTGCGTCTCCGGAGACGGCGG
CGTCCGCCACGGACCCTCGCAGCGGCAGCAGCGTTGGCGACGGCGGCGGC
GGCAGCGGTGGCGGTTCGTCGAGGGAGCTGAGGGTGACGCAGGCCGGCAA
GAAGCCGGCGGTGTGCGGTACCAAGACCAAGGCTGGCGACCTGATCGAGT
TCAGGGCGGACAGAAAAGCAGAGGAAGCTAGGCGGAGAAAGCGGAAGGCC
GCCGATGAAGCTGCGTCTCCGGAGACGGCGGCGTCCGCCACGGACCCTCG
CAGCGGCAGCAGCGTTGGCGACGGCGGCGGCGGCAGCGGTGGCGGTTCGT
CGAGGGAGCTGAGGGTGACGCAGGCCGGCAAGAAGCCGGCGGTGTGCGGT
ACCAAGACCAAGGCTGGCGACCTGATCGAGTTCAGG
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