mRNA_L-elsbetiae_contig1943.5768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1943.5768.1
Unique NamemRNA_L-elsbetiae_contig1943.5768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1943.5768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1943contigL-elsbetiae_contig1943:15545..16143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1943.5768.1prot_L-elsbetiae_contig1943.5768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1943 15742..16050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.1646316-UTR-L-elsbetiae_contig1943:15544..157411622815806.1646316-UTR-L-elsbetiae_contig1943:15544..15741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1943 15545..15741 +
1691683114.724732-UTR-L-elsbetiae_contig1943:15544..157411691683114.724732-UTR-L-elsbetiae_contig1943:15544..15741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1943 15545..15741 +
1622815806.1949031-UTR-L-elsbetiae_contig1943:16050..161431622815806.1949031-UTR-L-elsbetiae_contig1943:16050..16143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1943 16051..16143 +
1691683114.7453642-UTR-L-elsbetiae_contig1943:16050..161431691683114.7453642-UTR-L-elsbetiae_contig1943:16050..16143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1943 16051..16143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.1814172-CDS-L-elsbetiae_contig1943:15741..160501622815806.1814172-CDS-L-elsbetiae_contig1943:15741..16050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1943 15742..16050 +
1691683114.7342005-CDS-L-elsbetiae_contig1943:15741..160501691683114.7342005-CDS-L-elsbetiae_contig1943:15741..16050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1943 15742..16050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1943.5768.1

>prot_L-elsbetiae_contig1943.5768.1 ID=prot_L-elsbetiae_contig1943.5768.1|Name=mRNA_L-elsbetiae_contig1943.5768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MCTISYTKKNTFFRKQKSSQRQYEPRNIQHKSVARASTLDYIGSYSSRIY
EYTLYGIVIQHPSYIRQRCCCCRLYAELHYHSVLGGHRRFQTWPLFSPRG
LA*
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mRNA from alignment at L-elsbetiae_contig1943:15545..16143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1943.5768.1 ID=mRNA_L-elsbetiae_contig1943.5768.1|Name=mRNA_L-elsbetiae_contig1943.5768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig1943:15545..16143+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGCGAGACAACACACGAGGCCACTTTGCTCAGCCAGAGGGTTGGGGTC
ACATGAAACCTGTAGCTTTTCGCACCCCTGCCAGGGCGCAGGAAATATGG
GCCCTGTAGAGGGTTCGGGCCCTCTGTAGAGGGTTCGGGCCCTCTGTAGA
GGGAGTAAGTACCTAAGGTTGATGTTTCGGTATAAAACTGAAAATATATG
TGCACAATATCGTACACAAAAAAAAACACTTTTTTTCGAAAACAAAAAAG
TTCTCAGCGGCAGTATGAACCCAGGAATATTCAACACAAATCTGTCGCTC
GCGCCTCTACACTAGATTATATTGGAAGCTACTCCTCTCGAATCTATGAA
TATACACTGTATGGAATCGTCATTCAACACCCCTCCTACATACGTCAACG
CTGCTGCTGCTGTCGGCTCTACGCGGAGCTGCACTACCACAGCGTATTGG
GGGGTCATCGTAGATTTCAAACGTGGCCATTATTCTCTCCGAGAGGGTTG
GCATGAATCCTGTGGCATTTCGCACCCCTGCCCAGAGGGCAAAAAATGGC
CACGTGTAAAGGGCCACGAACGGCGTGTGCCGGTTGTGTTGAGTTGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1943:15545..16143+

>mRNA_L-elsbetiae_contig1943.5768.1 ID=mRNA_L-elsbetiae_contig1943.5768.1|Name=mRNA_L-elsbetiae_contig1943.5768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1943:15545..16143+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCACAATATCGTACACAAAAAAAAACACTTTTTTTCGAAAACAAAA
AAGTTCTCAGCGGCAGTATGAACCCAGGAATATTCAACACAAATCTGTCG
CTCGCGCCTCTACACTAGATTATATTGGAAGCTACTCCTCTCGAATCTAT
GAATATACACTGTATGGAATCGTCATTCAACACCCCTCCTACATACGTCA
ACGCTGCTGCTGCTGTCGGCTCTACGCGGAGCTGCACTACCACAGCGTAT
TGGGGGGTCATCGTAGATTTCAAACGTGGCCATTATTCTCTCCGAGAGGG
TTGGCATGAATGTGCACAATATCGTACACAAAAAAAAACACTTTTTTTCG
AAAACAAAAAAGTTCTCAGCGGCAGTATGAACCCAGGAATATTCAACACA
AATCTGTCGCTCGCGCCTCTACACTAGATTATATTGGAAGCTACTCCTCT
CGAATCTATGAATATACACTGTATGGAATCGTCATTCAACACCCCTCCTA
CATACGTCAACGCTGCTGCTGCTGTCGGCTCTACGCGGAGCTGCACTACC
ACAGCGTATTGGGGGGTCATCGTAGATTTCAAACGTGGCCATTATTCTCT
CCGAGAGGGTTGGCATGA
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