mRNA_L-elsbetiae_contig19420.5765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19420.5765.1
Unique NamemRNA_L-elsbetiae_contig19420.5765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19420.5765.1 vs. uniprot
Match: D8LRY5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.530e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:   33 ANAEVAFDKLDSGENGWLGESQFEVLMLSTYAKYSVECHRPRLLSVCRGGRLHREAFLSWYHEWLSGLLDR-DDIGNVR 266
            A AE AFDK+D+   GW+ ESQFE LM +    Y+VE H+P+LL++C  GRL R+AFL+WY +WL G  +  D+ G V+
Sbjct: 1686 AKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGDEESSDEEGEVK 1764
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BLAST of mRNA_L-elsbetiae_contig19420.5765.1 vs. uniprot
Match: A0A6H5K2C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.760e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:   42 EVAFDKLDSGENGWLGESQFEVLMLSTYAKYSVECHRPRLLSVCRGGRLHREAFLSWYHEWLSG 233
            E AFDK+D+   GW+ ESQFE LM +    Y+VE H+P+LL++C  GRL R+AFL+WY +WL G
Sbjct:  952 EAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLERQAFLTWYMDWLFG 1015
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BLAST of mRNA_L-elsbetiae_contig19420.5765.1 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.450e-6
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:  279 EERANAEMAFDKLDSVGNDWLEESQFKELMLSTYATYSVAEHRPKLLSICGEGRLHRDVFLSWYDEWLFGKEE 497
            +ER  A   F  L S G D + + +F +L+ +   TY   EHR  +  I  EG++HRD F+ WY +WLFG+ E
Sbjct:  124 DERNRAHEVFSSLSSDG-DSIPKEKFVDLIEAMGTTYCEEEHRRTIKKIAVEGKVHRDAFVEWYVDWLFGEGE 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19420.5765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRY5_ECTSI5.530e-1550.63N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K2C3_9PHAE6.760e-1454.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9W639_9STRA5.450e-639.73Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19420contigL-elsbetiae_contig19420:235..1305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D8LRY5
KEGG koko:K09566
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Exons1
Model size1071
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19420.5765.1prot_L-elsbetiae_contig19420.5765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19420 345..917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.103276-UTR-L-elsbetiae_contig19420:234..3441622815806.103276-UTR-L-elsbetiae_contig19420:234..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19420 235..344 +
1691683114.6895776-UTR-L-elsbetiae_contig19420:234..3441691683114.6895776-UTR-L-elsbetiae_contig19420:234..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19420 235..344 +
1622815806.1310685-UTR-L-elsbetiae_contig19420:917..13051622815806.1310685-UTR-L-elsbetiae_contig19420:917..1305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19420 918..1305 +
1691683114.714853-UTR-L-elsbetiae_contig19420:917..13051691683114.714853-UTR-L-elsbetiae_contig19420:917..1305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19420 918..1305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.1149163-CDS-L-elsbetiae_contig19420:344..9171622815806.1149163-CDS-L-elsbetiae_contig19420:344..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19420 345..917 +
1691683114.7037666-CDS-L-elsbetiae_contig19420:344..9171691683114.7037666-CDS-L-elsbetiae_contig19420:344..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19420 345..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19420.5765.1

>prot_L-elsbetiae_contig19420.5765.1 ID=prot_L-elsbetiae_contig19420.5765.1|Name=mRNA_L-elsbetiae_contig19420.5765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MLSTYAKYSVECHRPRLLSVCRGGRLHREAFLSWYHEWLSGLLDRDDIGN
VREARREERANAEMAFDKLDSVGNDWLEESQFKELMLSTYATYSVAEHRP
KLLSICGEGRLHRDVFLSWYDEWLFGKEEHSSADVGHARNVVGLASMVRN
QLVPESPTAETVNHKEEIEAAVSASGGVNLGRSGGGNTGD*
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mRNA from alignment at L-elsbetiae_contig19420:235..1305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19420.5765.1 ID=mRNA_L-elsbetiae_contig19420.5765.1|Name=mRNA_L-elsbetiae_contig19420.5765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1071bp|location=Sequence derived from alignment at L-elsbetiae_contig19420:235..1305+ (Laminarionema elsbetiae ELsaHSoW15)
GTAACGTCAGGGAGGCGCGTCGTGAGGAATGCGCTAATGCGGAGGTGGCC
TTTGACAAGCTTGATTCCGGTGAAAACGGTTGGTTGGGAGAGAGCCAGTT
CGAGGTGCTGATGCTATCGACGTACGCGAAATACTCTGTTGAGTGCCACA
GGCCGAGACTACTCTCAGTTTGCAGAGGAGGCCGACTTCACAGAGAAGCC
TTCTTGTCTTGGTACCATGAATGGCTGTCAGGCCTCCTTGATAGAGACGA
TATCGGTAATGTCAGGGAGGCGCGTCGGGAGGAAAGGGCCAATGCAGAGA
TGGCCTTCGACAAGCTTGATTCTGTCGGAAACGATTGGTTGGAAGAGAGC
CAGTTCAAGGAACTGATGCTATCGACGTACGCGACATATTCTGTTGCGGA
GCACAGGCCGAAGCTACTCTCGATCTGCGGAGAAGGTCGACTCCACCGGG
ATGTGTTCTTGTCTTGGTACGACGAATGGCTGTTCGGGAAGGAGGAACAC
TCGTCAGCAGATGTGGGACACGCCAGGAACGTGGTAGGTCTTGCGTCTAT
GGTGAGGAACCAGCTTGTTCCGGAGTCACCAACTGCAGAGACGGTGAACC
ACAAGGAAGAAATTGAGGCTGCAGTCAGTGCGTCAGGTGGGGTCAACTTG
GGAAGATCAGGCGGGGGAAATACTGGCGACTAGAAGTAGCACCCAACAAT
ACTACTGGCTAAACTAAGGCGGCAGCAACGGGTTCTGGGTAGCATAAATA
TCACGATTGGAAAAGTAAAGGTGGTAAACACGTGCAGGATGATGCTAATT
TGGCTGAATATTTCTAGGCTGGGACTGAGAAGTTTGTCAGAAAATGGCTT
TGCCAACGATGATAGTATTGGGTGCAATATGGGTTTGATGTCTCATCACC
TTCTGCAGTACATGTATCTGCGATGGCTATCGGAATCGGGCTTGGTAGTG
TAGCTGCCAGAATGATAAGTTCATTGTGCACTGAAATATTTCATCCGACA
CACACTGACCAGCCAGCTCGAACCTTCAACTTCGAATGCGCTGTTGATCC
CAAGCCCCAGCTCAGGCTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19420:235..1305+

>mRNA_L-elsbetiae_contig19420.5765.1 ID=mRNA_L-elsbetiae_contig19420.5765.1|Name=mRNA_L-elsbetiae_contig19420.5765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig19420:235..1305+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTATCGACGTACGCGAAATACTCTGTTGAGTGCCACAGGCCGAGACT
ACTCTCAGTTTGCAGAGGAGGCCGACTTCACAGAGAAGCCTTCTTGTCTT
GGTACCATGAATGGCTGTCAGGCCTCCTTGATAGAGACGATATCGGTAAT
GTCAGGGAGGCGCGTCGGGAGGAAAGGGCCAATGCAGAGATGGCCTTCGA
CAAGCTTGATTCTGTCGGAAACGATTGGTTGGAAGAGAGCCAGTTCAAGG
AACTGATGCTATCGACGTACGCGACATATTCTGTTGCGGAGCACAGGCCG
AAGCTACTCTCGATCTGCGGAGAAGGTCGACTCCACCGGGATGTGTTCTT
GTCTTGGTACGACGAATGGCTGTTCGGGAAGGAGGAACACTCGTCAGCAG
ATGTGGGACACGCCAGGAACGTGGTAGGTCTTGCGTCTATGGTGAGGAAC
CAGCTTGTTCCGGAGTCACCAACTGCAGAGACGGTGAACCACAAGGAAGA
AATTGAGGCTGCAGTCAGTGCGTCAGGTGGGGTCAACTTGGGAAGATCAG
GCGGGGGAAATACTGGCGACTAGATGCTATCGACGTACGCGAAATACTCT
GTTGAGTGCCACAGGCCGAGACTACTCTCAGTTTGCAGAGGAGGCCGACT
TCACAGAGAAGCCTTCTTGTCTTGGTACCATGAATGGCTGTCAGGCCTCC
TTGATAGAGACGATATCGGTAATGTCAGGGAGGCGCGTCGGGAGGAAAGG
GCCAATGCAGAGATGGCCTTCGACAAGCTTGATTCTGTCGGAAACGATTG
GTTGGAAGAGAGCCAGTTCAAGGAACTGATGCTATCGACGTACGCGACAT
ATTCTGTTGCGGAGCACAGGCCGAAGCTACTCTCGATCTGCGGAGAAGGT
CGACTCCACCGGGATGTGTTCTTGTCTTGGTACGACGAATGGCTGTTCGG
GAAGGAGGAACACTCGTCAGCAGATGTGGGACACGCCAGGAACGTGGTAG
GTCTTGCGTCTATGGTGAGGAACCAGCTTGTTCCGGAGTCACCAACTGCA
GAGACGGTGAACCACAAGGAAGAAATTGAGGCTGCAGTCAGTGCGTCAGG
TGGGGTCAACTTGGGAAGATCAGGCGGGGGAAATACTGGCGACTAG
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