mRNA_L-elsbetiae_contig1942.5763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1942.5763.1
Unique NamemRNA_L-elsbetiae_contig1942.5763.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A6H5JTR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR6_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 2.010e-94
Identity = 158/224 (70.54%), Postives = 175/224 (78.12%), Query Frame = 1
Query:  106 SLGPLKMSMQGELFIYSPTKRLAAFRSGGVGGVG--------EQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEARTRGGGEELMPVAADEAPITPERFLSLATK 753
            S+  + MS+ GELF+YSP KRLAAFRSG  GG          +QR  R+HAVF+PGLTDGLLALDYVP LAAALDRLG++ VQP+LSSSY+GYGTSSLRQDVEELDELLD LS+ P S P+  P            SSF+LIGHSTGCQDAVFYMKHGR DL A V+GVVLQAPVSDREYLETLP T  F+EEAR RGGG ELMPVAAD+APIT  RFLSLATK
Sbjct:   29 SMTSVSMSLHGELFVYSPKKRLAAFRSGCHGGGSSSSDRQSRQQRHNRKHAVFVPGLTDGLLALDYVPELAAALDRLGFAFVQPVLSSSYQGYGTSSLRQDVEELDELLDYLSSTP-SPPV--PEVASSDAGSSSSSSFLLIGHSTGCQDAVFYMKHGRPDLRAAVVGVVLQAPVSDREYLETLPSTEGFIEEARVRGGGGELMPVAADQAPITAARFLSLATK 249          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: D7G2M3_ECTSI (Catalytic, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M3_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 7.740e-70
Identity = 139/210 (66.19%), Postives = 151/210 (71.90%), Query Frame = 1
Query:  544 MKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEARTRGGGEELMPVAADEAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVPPPGNGRPAPEAQAEALRAAMVSTPPPGDV---------SAGXXXXXXXXXXXXXXXXXXXXXXXADKTVAFVIDGANHALSAPTHAEEFIAKVEAFVASL 1146
            MKHGR DL A V+GVVLQAPVSDREYLETLP T  F+EEAR RGGG ELMPVAAD+APIT  RF+SLATK GDDD+FSADLT +ERH RLGHMASVPTAAFLSGAD+FVP  G GR  PE  AE LRAAMVS                SA              XXXXXXXXXX  KTV FVID A+H+LS+P HA+EFI+KVE F A L
Sbjct:    1 MKHGRSDLRAAVVGVVLQAPVSDREYLETLPSTEGFIEEARVRGGGGELMPVAADQAPITAARFISLATKEGDDDMFSADLTADERHGRLGHMASVPTAAFLSGADQFVPQ-GGGRSPPEVLAETLRAAMVSXXXXXXXXXXXLGTACSAASSGRAEPGDGTRGXXXXXXXXXXXKKTVVFVIDEADHSLSSPAHAQEFISKVEVFAAGL 209          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A843TQ87_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TQ87_COLES)

HSP 1 Score: 192 bits (489), Expect = 1.130e-54
Identity = 120/262 (45.80%), Postives = 151/262 (57.63%), Query Frame = 1
Query:  100 PVSLGPLKMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEARTR---GGGEELMPVAAD-EAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            P  LG  +  + G LF Y P     AF++G           R+  +FI GLTDGLLA +Y+  L+ AL+   +SLVQP+LSSSY GYGTSSL+QD  ELD+L+  L     S                     +L+GHSTGCQD V YM+       A V G +LQAPVSDREY  TLPGTAA ++ A +    G G +LMP  AD EAPIT  R+ SL    GDDD+FS+DLT ++   RLGHM++ P     S ADE+VP
Sbjct:   50 PAPLGGRRNQLHGVLFKYGPKSVQVAFKTGDF---------RQQVIFIGGLTDGLLATEYLEPLSIALENEKWSLVQPLLSSSYIGYGTSSLKQDSLELDQLISYLINKENSE------------------GVVLLGHSTGCQDIVHYMRSNSACSRA-VRGAILQAPVSDREYRATLPGTAAMIDLASSMINDGRGMDLMPRDADPEAPITAYRYHSLCAYMGDDDMFSSDLTDDQLRLRLGHMSNTPCQVVFSMADEYVP 283          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A5N5HIH1_9ROSA (Uncharacterized protein n=9 Tax=Maleae TaxID=721813 RepID=A0A5N5HIH1_9ROSA)

HSP 1 Score: 191 bits (486), Expect = 3.230e-54
Identity = 120/260 (46.15%), Postives = 147/260 (56.54%), Query Frame = 1
Query:  112 GPL--KMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEART---RGGGEELMPVAADE-APITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            GP+  K   +G LF Y P     AF++G           R+  +FI GLTDG LA +Y+  LA ALD+  +SLVQP+LSSSY GYGTSSL+QD  ELD+L+        S                     +L+GHSTGCQD V YM+       A V   +LQAPVSDREY  TLP TAA ++ A T    G G ELMP AAD  APIT  R+ SL    GDDD+FS+DLT ++   RLGHM + P     S ADE+VP
Sbjct:   52 GPVVRKNQFRGVLFKYGPKPIEVAFKTG---------DYRQQVIFIGGLTDGFLATEYLEPLAIALDKEKWSLVQPLLSSSYSGYGTSSLKQDAIELDQLISHFINKEDSE------------------GVVLLGHSTGCQDVVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAAMIDLASTMISEGRGSELMPSAADPGAPITAYRYHSLCAYNGDDDMFSSDLTDDQLRLRLGHMTNTPCQVIFSMADEYVP 283          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A7J7E147_TRIWF (Uncharacterized protein n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7E147_TRIWF)

HSP 1 Score: 192 bits (487), Expect = 3.420e-54
Identity = 121/261 (46.36%), Postives = 148/261 (56.70%), Query Frame = 1
Query:  106 SLGPLKMSMQ--GELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEART---RGGGEELMPVAADEAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            S GP+K   Q  G LF Y P     AF++G           ++  +FI GLTDG LA DY+  LA ALDR  +SLVQ +LSSSY GYGTSSL++D  ELD+L+  L     S                     +L+GHSTGCQD V YM+       A V   +LQAPVSDREY  TLP TAA ++ A +    G G ELMP  AD +PIT  RF SL    GDDDLFS+DLT ++   RLGHM++ P     S ADE+VP
Sbjct:   66 SAGPIKAKNQYRGILFKYGPKPIQVAFKTG---------DYKQQVIFIGGLTDGFLATDYLEPLAMALDREKWSLVQLLLSSSYSGYGTSSLQEDAMELDQLISFLINKENSE------------------GVVLLGHSTGCQDIVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAAMIDLASSMIAEGRGSELMPREADLSPITAYRFHSLCAYMGDDDLFSSDLTDDQLRMRLGHMSNTPCQVIFSMADEYVP 298          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A6P5RV68_PRUAV (UPF0613 protein PB24D3.06c isoform X2 n=3 Tax=Prunus TaxID=3754 RepID=A0A6P5RV68_PRUAV)

HSP 1 Score: 191 bits (484), Expect = 9.490e-54
Identity = 121/260 (46.54%), Postives = 147/260 (56.54%), Query Frame = 1
Query:  112 GPL--KMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEART---RGGGEELMPVAADE-APITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            GP+  K   +G LF Y P     AF++G           R+  +FI GLTDG LA DY+  LA ALD+  +SLVQP+LSSSY GYGTSSL+QD  ELD+L+        S                     +L+GHSTGCQD V YM+       A V   +LQAPVSDREY  TLP TAA ++ A T    G G EL+P  AD  APIT  R+ SL    GDDDLFS+DLT ++   RLGHMA+ P     S ADE+VP
Sbjct:   67 GPVVRKNQFRGVLFKYGPKPIQVAFKTG---------DYRQQVIFIGGLTDGFLATDYLEPLAIALDKEKWSLVQPLLSSSYSGYGTSSLQQDAMELDQLISHFINKEDSE------------------GVVLLGHSTGCQDIVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAAMIDLASTMISEGRGLELLPSEADPGAPITAYRYHSLCAYNGDDDLFSSDLTDDQLRLRLGHMANTPCQVMYSMADEYVP 298          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A1Y1IHA6_KLENI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHA6_KLENI)

HSP 1 Score: 187 bits (474), Expect = 4.490e-53
Identity = 119/256 (46.48%), Postives = 144/256 (56.25%), Query Frame = 1
Query:  121 KMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEAR---TRGGGEELMP-VAADEAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVPP 876
            K  M G+LF Y       AFRSG            + A+FI GLTDGLLA  YV  LA AL  + +SLVQP+ SSSY GYG SSL QD +E++ L+  L     S                     +LIGHSTGCQD V Y++ G    T  V GV+LQ PVSDREYL T+P TA  ++ A      G    LMP  A+ EAPIT  R+ SLA+ GGDDD+FS+DL  +    +LGHMA +PTA   S  DEFVPP
Sbjct:    4 KKEMLGKLFKYGDKGVQVAFRSGNFS---------KQAIFIGGLTDGLLATKYVEPLAHALGAIQWSLVQPLFSSSYTGYGVSSLDQDAQEIESLIKFLVNEEGSE------------------GVVLIGHSTGCQDIVHYLRVGGV-CTRAVRGVILQGPVSDREYLATMPDTAKHLQLAEKMIAEGKKHALMPREASPEAPITAYRYHSLASPGGDDDMFSSDLPQQTLEWKLGHMALIPTAIIFSMQDEFVPP 231          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: A0A7I8L864_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L864_SPIIN)

HSP 1 Score: 187 bits (475), Expect = 1.080e-52
Identity = 118/258 (45.74%), Postives = 147/258 (56.98%), Query Frame = 1
Query:  112 GPLKMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEART---RGGGEELMPVAAD-EAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            G  K  + G LF Y P     AF++G           R+  +FI GLTDGLLA +Y+ SL+ AL++  +SLVQP+LSSSY GYG SSL+QD  ELD L+  L     S                     +L+GHSTGCQD V+YM+       A V G +LQAPVSDREY  TLP TAA ++ A T        +LMP  AD +APIT  R+ SL    GDDD+FS+DLT ++   RLGHMA+ P     S ADEFVP
Sbjct:   45 GSRKNQLPGVLFKYGPKAVQVAFKTGDF---------RQQVIFIGGLTDGLLATEYLESLSVALEKERWSLVQPLLSSSYTGYGISSLKQDSMELDLLISHLINKENSE------------------GVVLLGHSTGCQDIVYYMRSNSACSRA-VRGAILQAPVSDREYRATLPETAAMIDLASTMISENKATDLMPRNADPDAPITAYRYHSLCAYMGDDDMFSSDLTDDQLRLRLGHMANTPCQVIFSMADEFVP 274          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: B9RTT3_RICCO (Catalytic, putative n=4 Tax=Euphorbiaceae TaxID=3977 RepID=B9RTT3_RICCO)

HSP 1 Score: 187 bits (476), Expect = 1.230e-52
Identity = 117/262 (44.66%), Postives = 149/262 (56.87%), Query Frame = 1
Query:  106 SLGPLKMSMQ--GELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVEEART---RGGGEELMPVAAD-EAPITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            +LGP+K   Q  G LF Y P     AF++G         + ++  VFI GLTDG LA +Y+  LA ALD+  +SLVQ ++SSSY GYGTSSL+QD  E+D+L+  L     S                     +L+GHSTGCQD V YM+       A V   +LQAPVSDREY  TLP TAA ++ A T    G G ELMP  AD  +PIT  R+ SL    GDDD+FS+DLT ++   RLGHM + P     S ADE++P
Sbjct:   59 NLGPIKAKNQFRGVLFKYGPKAIQVAFKTG---------EHKQQVVFIGGLTDGFLATEYLEPLAIALDKEKWSLVQLLMSSSYSGYGTSSLQQDAMEIDQLISYLINKENSE------------------GVVLLGHSTGCQDIVHYMRTNAACSRA-VRAAILQAPVSDREYNATLPKTAAMIDLASTMIAEGRGSELMPREADPSSPITASRYHSLCAYMGDDDMFSSDLTDDQLRMRLGHMCNTPCQVIFSMADEYIP 292          
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Match: D8RBS1_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RBS1_SELML)

HSP 1 Score: 185 bits (470), Expect = 1.660e-52
Identity = 115/255 (45.10%), Postives = 148/255 (58.04%), Query Frame = 1
Query:  121 KMSMQGELFIYSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAALDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLPPPTXXXXXXXXXDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQAPVSDREYLETLPGTAAFVE---EARTRGGGEELMPVAADEA-PITPERFLSLATKGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVP 873
            K  MQG LF Y P     AFR+G           ++  +FI GLTDG  A +Y+  LA AL+   +SLVQ +LSSSY GYGTSSL+QD +EL++L++ L     S                     +L+GHSTGCQD V+Y++ G   + A V G +LQAPVSDREY  TLPGTAA ++   E    G   +LMP  A+ A PIT  RF SLA   GDDD+FS+DL+ E+   RL HM+ +P     S ADE+VP
Sbjct:    4 KTQMQGTLFKYGPKPVQVAFRTGSF---------QQQVIFIGGLTDGFFATEYLLPLAKALESERWSLVQCLLSSSYSGYGTSSLKQDAQELEQLINYLINEENSH------------------GVVLLGHSTGCQDIVYYLREGGICMKA-VRGAILQAPVSDREYRATLPGTAAMIDLADEMIKEGRELDLMPRGAEPAAPITAHRFRSLAGYMGDDDMFSSDLSDEQLRVRLEHMSKLPCQVIFSMADEYVP 230          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1942.5763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTR6_9PHAE2.010e-9470.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2M3_ECTSI7.740e-7066.19Catalytic, putative n=1 Tax=Ectocarpus siliculosus... [more]
A0A843TQ87_COLES1.130e-5445.80Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A5N5HIH1_9ROSA3.230e-5446.15Uncharacterized protein n=9 Tax=Maleae TaxID=72181... [more]
A0A7J7E147_TRIWF3.420e-5446.36Uncharacterized protein n=2 Tax=Tripterygium wilfo... [more]
A0A6P5RV68_PRUAV9.490e-5446.54UPF0613 protein PB24D3.06c isoform X2 n=3 Tax=Prun... [more]
A0A1Y1IHA6_KLENI4.490e-5346.48Predicted hydrolases or acyltransferases (Alpha/be... [more]
A0A7I8L864_SPIIN1.080e-5245.74Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
B9RTT3_RICCO1.230e-5244.66Catalytic, putative n=4 Tax=Euphorbiaceae TaxID=39... [more]
D8RBS1_SELML1.660e-5245.10Uncharacterized protein n=2 Tax=Selaginella moelle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1942contigL-elsbetiae_contig1942:4129..7656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue1.9e-57
Seed eggNOG ortholog2880.D7G2M3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
EggNOG free text desc.Protein of unknown function (DUF1749)
EggNOG OGsKOG4840@1,KOG4840@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF1749
Ec32 orthologEc-11_002760.1
Exons7
Model size1155
Cds size1155
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.7340393-CDS-L-elsbetiae_contig1942:4128..42691622815805.7340393-CDS-L-elsbetiae_contig1942:4128..4269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 4129..4269 +
1691683114.4093227-CDS-L-elsbetiae_contig1942:4128..42691691683114.4093227-CDS-L-elsbetiae_contig1942:4128..4269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 4129..4269 +
1622815805.7440586-CDS-L-elsbetiae_contig1942:4617..48311622815805.7440586-CDS-L-elsbetiae_contig1942:4617..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 4618..4831 +
1691683114.4220169-CDS-L-elsbetiae_contig1942:4617..48311691683114.4220169-CDS-L-elsbetiae_contig1942:4617..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 4618..4831 +
1622815805.7532203-CDS-L-elsbetiae_contig1942:5245..53541622815805.7532203-CDS-L-elsbetiae_contig1942:5245..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 5246..5354 +
1691683114.4304614-CDS-L-elsbetiae_contig1942:5245..53541691683114.4304614-CDS-L-elsbetiae_contig1942:5245..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 5246..5354 +
1622815805.7623577-CDS-L-elsbetiae_contig1942:5831..59641622815805.7623577-CDS-L-elsbetiae_contig1942:5831..5964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 5832..5964 +
1691683114.4390252-CDS-L-elsbetiae_contig1942:5831..59641691683114.4390252-CDS-L-elsbetiae_contig1942:5831..5964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 5832..5964 +
1622815805.772491-CDS-L-elsbetiae_contig1942:6215..63711622815805.772491-CDS-L-elsbetiae_contig1942:6215..6371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 6216..6371 +
1691683114.4489312-CDS-L-elsbetiae_contig1942:6215..63711691683114.4489312-CDS-L-elsbetiae_contig1942:6215..6371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 6216..6371 +
1622815805.7842834-CDS-L-elsbetiae_contig1942:6791..70191622815805.7842834-CDS-L-elsbetiae_contig1942:6791..7019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 6792..7019 +
1691683114.4590623-CDS-L-elsbetiae_contig1942:6791..70191691683114.4590623-CDS-L-elsbetiae_contig1942:6791..7019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 6792..7019 +
1622815805.7980964-CDS-L-elsbetiae_contig1942:7482..76561622815805.7980964-CDS-L-elsbetiae_contig1942:7482..7656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 7483..7656 +
1691683114.4693227-CDS-L-elsbetiae_contig1942:7482..76561691683114.4693227-CDS-L-elsbetiae_contig1942:7482..7656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 7483..7656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1942.5763.1prot_L-elsbetiae_contig1942.5763.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1942 4129..7656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1942.5763.1

>prot_L-elsbetiae_contig1942.5763.1 ID=prot_L-elsbetiae_contig1942.5763.1|Name=mRNA_L-elsbetiae_contig1942.5763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=385bp
RAGSHISFASSRPLSALSLYLSISLSLHSHMLLPVSLGPLKMSMQGELFI
YSPTKRLAAFRSGGVGGVGEQRQRRRHAVFIPGLTDGLLALDYVPSLAAA
LDRLGYSLVQPILSSSYKGYGTSSLRQDVEELDELLDCLSTVPPSSPLLP
PPTPASGSGSGSDSSFILIGHSTGCQDAVFYMKHGRRDLTAKVLGVVLQA
PVSDREYLETLPGTAAFVEEARTRGGGEELMPVAADEAPITPERFLSLAT
KGGDDDLFSADLTPEERHSRLGHMASVPTAAFLSGADEFVPPPGNGRPAP
EAQAEALRAAMVSTPPPGDVSAGSAAGREENQDGGQDSATTTAAAAADKT
VAFVIDGANHALSAPTHAEEFIAKVEAFVASLVG*
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mRNA from alignment at L-elsbetiae_contig1942:4129..7656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1942.5763.1 ID=mRNA_L-elsbetiae_contig1942.5763.1|Name=mRNA_L-elsbetiae_contig1942.5763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3528bp|location=Sequence derived from alignment at L-elsbetiae_contig1942:4129..7656+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGGATCTCATATTTCTTTTGCCTCCTCTCGGCCACTCTCCGCTCT CTCTCTCTATCTCTCTATCTCTCTATCTCTACACTCGCATATGCTGCTGC CTGTTTCACTCGGACCGCTCAAGATGTCCATGCAAGGCGAGGTGTGTTTT GCAACTTTCCCATGTCGTACAGAGTTGCCACACACGTGCTAGATAGATAG ATAGATATGCAGAGGGAACTTGTATACATGTTCTTTACATATGCGTATCT TCAGGTGTTGCGCTACGAAATGCCATACGTCTCCCGTCCCCCGCCGCCCC GTAGCAGCGGAACAAAGCGTACTGCCCTCTGGTACATTTGTACGCCCATC ACCCCGCATATAGTCGAACACGTAACCGTGCGTAGGCAATCGACGCCCAT CGCCTGTGGTCCACCCTTCATGAATAACGGGTGCCGACTTTGAACCGACC CTGTGAACGCACACTCTCTGCCCCCCGACGCATGTGAAGCTTTTTATATA CTCTCCCACGAAGCGCCTAGCGGCCTTTCGTAGCGGCGGCGTCGGCGGCG TTGGTGAGCAACGACAACGGCGGCGACACGCCGTGTTTATACCTGGCCTG ACGGACGGCCTCCTGGCCCTCGACTATGTCCCTTCGCTGGCTGCCGCGCT GGACCGTCTGGGCTACTCTCTCGTACAGCCCATCTTATCATCGTCCTACA AAGGTGCCGTGCCGTATACCCTGCATTGCTGTGTTACCTCTACCCATTGG TATGTACAACGAAAAATAACGCACATAGATACCTAATCTATCTAATATTC GCCTCGTATCGATGAGTTTGTCGGAAGGAAGACATAGAGGCGACACGGAC GGTGTACGTTTTTTGCCGTTCTGGCATCAATTTTGAGCGGCTTTGACCCT CCGTCTGTTCATGAACTCACTCACTCACCTTCATTCAGGCATAATTCCGC ATGTGTGCGTGCGGTCAACCCAACCCCACCCAAACGCCCTCGCCCCCTTC ATCACACCTGCGATGCGTGATCAAGGGACTAAACAAACATCACAGGTAGA TCACAGGCCAAGCAACACATTGCCCCCCCCCCAACCCCGCACGCTCTTTC CCAACACGAGAGCGTAGGGTACGGCACGAGCAGTCTCCGCCAAGACGTGG AGGAGCTGGACGAGCTGTTGGACTGCCTATCGACCGTCCCACCGTCGTCG CCACTGCTACCGCCTCCAACTCCAGCGTGAGCAGCATTTCACGTGGCGAG ATAGACCAACTACTTCGTATGTGTGCTGTAGCGGTTCTACCTACCACCTC TGAAGGGTACCGCGCCCGCCCCCCAAACAGGATTCTCCGTCGTACTGATG ATTCGTTTGTCATTCTCGTGGCGGTTTCGAAATCGGTTGATTCGTGTGTG CGGGGCGGGCTCTCTCGTTGTATTTCGTCCCAATTCCGTTTTTTTCTGTG GCGGGTGACGTGACCCAAGAGCGCATGTGACCTTGCTGTTTCGAAATCGG TTGATTCGTGTGTGCGGGGCGGGCTCTCTCGTTGTATTTCGTCCCAATTC CGTATTGTTCTGTGGCGGGTGACGTGACCCAAGAGCGATGTGACCTTGCT GGATATTTATTTTCGTTGCCGCCTGTTCTTGGGTGGGGAAATATAGTTCT GCTTCACTGCGAGTGCAAATCACGAAAATCACCCCATAAAACATTCCTCG CAGCAGCGGCAGCGGCAGCGGCAGCGACAGCAGTTTCATCCTGATTGGCC ACTCCACTGGCTGCCAAGACGCGGTTTTCTACATGAAGCACGGAAGGCGA GATCTCACGGCCAAGGTTCTCGGCGTGGTATTGCAGGTAAAAGACAAAAA ATTAGGATCCATCTTTGATTCATTGTTTATTTTATTTTTAAAGAAAACCG GCGAATCCGAAGCTTCCTTCGTGCACACAGCAGTCTACACCCTGTCTGGC ACATGCTCCGTGCGAAGCTTCGACCTAAAACAAGCGCTCTTTCACCATCC TCCGTCTTCCTCTTGAGGGTCCCAGTCGTTTGCGAAGCGCCAGTCCAGCC ACTGACTTCTTCGGCGCTTGGCGTGGTGATGCCGCAGGCGCCGGTCAGCG ATCGTGAATACCTGGAGACTCTACCCGGCACGGCAGCTTTCGTCGAGGAG GCGAGGACGAGGGGGGGAGGCGAGGAGCTGATGCCTGTCGCGGCCGACGA GGCCCCCATCACGCCCGAAAGGTTTCTGTCCCTCGCGACCAAGGTACAGT AGTACAAAGGCAAAACAAAGAACACGTCACCCGGCCCAAAACAGGCGTGC CATGAGATAGATGCCTCTGGCTTGTAGAGAGAGGCAGTACGAGTTTGATT TGACTCTTAGTCGCAGTCCAACCCCGCGCAACGATCATCCTTGTTGCCAC AGACTCTGTCGCGGAAAGCGCTCTCACAGGAGTATCCAATATCATGAGGG GTATACCGCAGCAGTAGCCATGGCAGCATCTATTTCGAGCGCCATTTCCT GCAAATAATTGTAAGCAGCGCTGATGTTGACAAGCGCAGTCGCTTATCTC GTAAATAAATAAAACAGACAGAGAGTGCATACATTTTGGTGGAGTTGTGG CAGACACGGCAGTGGTGATCTCTCACGCGATCCAACCGTTGCGAACGCCT GTCTGTTGTTCAGGGGGGGGACGACGACCTGTTTAGCGCCGACCTTACCC CCGAAGAAAGGCACTCTCGCCTGGGCCACATGGCCTCGGTACCCACGGCG GCGTTTCTCTCCGGGGCTGACGAGTTCGTTCCGCCTCCCGGAAACGGGAG GCCCGCGCCGGAAGCGCAGGCGGAGGCGCTCCGGGCCGCGATGGTTTCTA CGCCCCCCCCAGGCGATGTGTCTGCTGGTTCTGCTGCCGGTGTCAGGTAT AGATAGGTCGGGGCGAGGAGCTGTCCCTTTTTCTTCGTCGAGTTGCGCGT GTTTTCCGAGCTCCGTGTCTTGCGAGGTGTGGGTGGTTGGTACGGTTGCT GCGGCAGCGGTTTTGCGGCGACGCAGTGGACAGCAGCACCATGAAGTCCC AGTATTCGGGTCTGGACGCAAGCGTCGTTGCTGGTTGCTTTCCTGCACAC ACATGAAGCCGTGCTACGGCTCTGGTCTAGATCGAAAATTTCATTAGACA TACGTAATCCTAGTAAGCAATCCTCAGGCTTGATAAAGAGGCTCTCGTGA TAAATTTACGACCCGAGACGTTTACCGTGCACTCATCCGCATCCAGCGTG GCAATGTATGGGTTGTACTCCAGCGGGCGCAAGGCACGGGTGCCCTCAAT GATGGATCTACATAACTGTGCGTCGAATTATTTTCTGTCCGTGCAAGCAG GGAGAGAGAAGAAAATCAAGATGGGGGGCAAGATAGTGCCACAACAACAG CGGCGGCGGCAGCGGACAAGACGGTGGCGTTTGTTATCGACGGGGCGAAT CACGCCTTGAGTGCACCGACCCACGCGGAAGAGTTCATCGCGAAAGTTGA GGCGTTTGTTGCCAGCCTGGTGGGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1942:4129..7656+

>mRNA_L-elsbetiae_contig1942.5763.1 ID=mRNA_L-elsbetiae_contig1942.5763.1|Name=mRNA_L-elsbetiae_contig1942.5763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2310bp|location=Sequence derived from alignment at L-elsbetiae_contig1942:4129..7656+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGGATCTCATATTTCTTTTGCCTCCTCTCGGCCACTCTCCGCTCT
CTCTCTCTATCTCTCTATCTCTCTATCTCTACACTCGCATATGCTGCTGC
CTGTTTCACTCGGACCGCTCAAGATGTCCATGCAAGGCGAGCGCGCAGGA
TCTCATATTTCTTTTGCCTCCTCTCGGCCACTCTCCGCTCTCTCTCTCTA
TCTCTCTATCTCTCTATCTCTACACTCGCATATGCTGCTGCCTGTTTCAC
TCGGACCGCTCAAGATGTCCATGCAAGGCGAGCTTTTTATATACTCTCCC
ACGAAGCGCCTAGCGGCCTTTCGTAGCGGCGGCGTCGGCGGCGTTGGTGA
GCAACGACAACGGCGGCGACACGCCGTGTTTATACCTGGCCTGACGGACG
GCCTCCTGGCCCTCGACTATGTCCCTTCGCTGGCTGCCGCGCTGGACCGT
CTGGGCTACTCTCTCGTACAGCCCATCTTATCATCGTCCTACAAAGCTTT
TTATATACTCTCCCACGAAGCGCCTAGCGGCCTTTCGTAGCGGCGGCGTC
GGCGGCGTTGGTGAGCAACGACAACGGCGGCGACACGCCGTGTTTATACC
TGGCCTGACGGACGGCCTCCTGGCCCTCGACTATGTCCCTTCGCTGGCTG
CCGCGCTGGACCGTCTGGGCTACTCTCTCGTACAGCCCATCTTATCATCG
TCCTACAAAGGGTACGGCACGAGCAGTCTCCGCCAAGACGTGGAGGAGCT
GGACGAGCTGTTGGACTGCCTATCGACCGTCCCACCGTCGTCGCCACTGC
TACCGCCTCCAACTCCAGCGGTACGGCACGAGCAGTCTCCGCCAAGACGT
GGAGGAGCTGGACGAGCTGTTGGACTGCCTATCGACCGTCCCACCGTCGT
CGCCACTGCTACCGCCTCCAACTCCAGCCAGCGGCAGCGGCAGCGGCAGC
GACAGCAGTTTCATCCTGATTGGCCACTCCACTGGCTGCCAAGACGCGGT
TTTCTACATGAAGCACGGAAGGCGAGATCTCACGGCCAAGGTTCTCGGCG
TGGTATTGCAGCAGCGGCAGCGGCAGCGGCAGCGACAGCAGTTTCATCCT
GATTGGCCACTCCACTGGCTGCCAAGACGCGGTTTTCTACATGAAGCACG
GAAGGCGAGATCTCACGGCCAAGGTTCTCGGCGTGGTATTGCAGGCGCCG
GTCAGCGATCGTGAATACCTGGAGACTCTACCCGGCACGGCAGCTTTCGT
CGAGGAGGCGAGGACGAGGGGGGGAGGCGAGGAGCTGATGCCTGTCGCGG
CCGACGAGGCCCCCATCACGCCCGAAAGGTTTCTGTCCCTCGCGACCAAG
GCGCCGGTCAGCGATCGTGAATACCTGGAGACTCTACCCGGCACGGCAGC
TTTCGTCGAGGAGGCGAGGACGAGGGGGGGAGGCGAGGAGCTGATGCCTG
TCGCGGCCGACGAGGCCCCCATCACGCCCGAAAGGTTTCTGTCCCTCGCG
ACCAAGGGGGGGGACGACGACCTGTTTAGCGCCGACCTTACCCCCGAAGA
AAGGCACTCTCGCCTGGGCCACATGGCCTCGGTACCCACGGCGGCGTTTC
TCTCCGGGGCTGACGAGTTCGTTCCGCCTCCCGGAAACGGGAGGCCCGCG
CCGGAAGCGCAGGCGGAGGCGCTCCGGGCCGCGATGGTTTCTACGCCCCC
CCCAGGCGATGTGTCTGCTGGTTCTGCTGCCGGTGGGGGGGACGACGACC
TGTTTAGCGCCGACCTTACCCCCGAAGAAAGGCACTCTCGCCTGGGCCAC
ATGGCCTCGGTACCCACGGCGGCGTTTCTCTCCGGGGCTGACGAGTTCGT
TCCGCCTCCCGGAAACGGGAGGCCCGCGCCGGAAGCGCAGGCGGAGGCGC
TCCGGGCCGCGATGGTTTCTACGCCCCCCCCAGGCGATGTGTCTGCTGGT
TCTGCTGCCGGTAGAGAAGAAAATCAAGATGGGGGGCAAGATAGTGCCAC
AACAACAGCGGCGGCGGCAGCGGACAAGACGGTGGCGTTTGTTATCGACG
GGGCGAATCACGCCTTGAGTGCACCGACCCACGCGGAAGAGTTCATCGCG
AAAGTTGAGGCGTTTGTTGCCAGCCTGGTGGGCTGAAGAGAAGAAAATCA
AGATGGGGGGCAAGATAGTGCCACAACAACAGCGGCGGCGGCAGCGGACA
AGACGGTGGCGTTTGTTATCGACGGGGCGAATCACGCCTTGAGTGCACCG
ACCCACGCGGAAGAGTTCATCGCGAAAGTTGAGGCGTTTGTTGCCAGCCT
GGTGGGCTGA
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