mRNA_L-elsbetiae_contig1941.5759.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1941.5759.1
Unique NamemRNA_L-elsbetiae_contig1941.5759.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: D8LJS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.380e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   16 KGKEKVPVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRSGAAASKGQAKP 243
            K +EKVPV E+LEEDDEFEEFAEANWDE+AEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKT+  A    GQAKP
Sbjct:    5 KVEEKVPVAEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPAT---GQAKP 77
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A7S2CP29_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP29_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.770e-13
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    7 AEGKGKEKVPVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAEL 195
            A  + K + P  E+LEEDDEFEEFAE NWD+SAED ED  QW++D        DF NQLRAEL
Sbjct:   16 APAEEKPEAPKLEVLEEDDEFEEFAEKNWDKSAEDGEDAAQWEEDWDDGELDDDFTNQLRAEL 78
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A7S1ZHX0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHX0_TRICV)

HSP 1 Score: 60.8 bits (146), Expect = 3.010e-10
Identity = 33/63 (52.38%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   34 PVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRSGAAA 222
            P+TE +EEDDEFEEF    WD   ED ED QQWQD+        DF   LRAEL K   G  A
Sbjct:   38 PITEAIEEDDEFEEFEPCRWDAHDEDAEDAQQWQDNWDDDDIEDDFTKNLRAELTKNSEGKKA 100
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A7S4EAY6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAY6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-9
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   34 PVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 201
            P  E+ EEDDEFEEFA+ NWD +AED ED + WQDDX       DFC  LR EL+K
Sbjct:  119 PDYEVYEEDDEFEEFAQDNWDAAAEDAEDPKLWQDDXDDDDVDDDFCRHLREELQK 174
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A6A3T8R4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T8R4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.910e-9
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    4 AAEGKGK---EKVPVTEIL-EEDDEFEEFAEANWDESAEDQED--LQQWQDDXXXXXXXXDFCNQLRAELEKTRSGAAASK 228
            AA GK     EKVP   ++ EEDDEFEEF +A+W+  AE+++    QQWQDD        +FCNQLR EL+KT++   A +
Sbjct:   11 AAAGKAPAQAEKVPALVVVTEEDDEFEEFEDADWNGQAEEKDAHIKQQWQDDWDVDEADDEFCNQLRKELQKTKTYKTADR 91
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A8J5X4N4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4N4_DIALT)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-8
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   43 EILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 201
            ++LEEDDEFEEF   +WD +AED ED Q WQDD        DF  QLRAEL K
Sbjct:   11 DMLEEDDEFEEFEAESWDLTAEDAEDQQLWQDDWDEDDAKNDFTQQLRAELAK 63
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A0U2T7H1_9MAXI (Putative 26S proteasome complex subunit DSS1 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T7H1_9MAXI)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-7
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   43 EILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELE 198
            ++LEEDDEFEEF + +WD   EDQ D++ W+D+        DFCNQLR  LE
Sbjct:    9 DLLEEDDEFEEFEQEDWDIRREDQTDIKVWEDNWDNDDLESDFCNQLRKVLE 60
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: I1CD22_RHIO9 (26S proteasome complex subunit DSS1 n=2 Tax=Rhizopus TaxID=4842 RepID=I1CD22_RHIO9)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-7
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   46 ILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 201
            +LEEDDEFEEFA  +W E  EDQ D   W+D+        DF  QLRAELEK
Sbjct:   24 VLEEDDEFEEFAAEDWGEEEEDQNDAHFWEDNWDDDDIEDDFSKQLRAELEK 75
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: A0A0D2WWT7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WWT7_CAPO3)

HSP 1 Score: 52.0 bits (123), Expect = 5.490e-7
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    4 AAEGKGKEKVPVT---EILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRSGA 216
            A   K  ++ P T   ++LEEDDEFEEF +  W+ SAED+ D Q W+D+        DF  QLRAEL ++ + A
Sbjct:    5 ATASKDAKQEPATANVDLLEEDDEFEEFPQEEWNGSAEDKTDQQLWEDNWDDDAAEDDFAKQLRAELSQSTAMA 78
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Match: L1J5M5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5M5_GUITC)

HSP 1 Score: 50.4 bits (119), Expect = 1.840e-6
Identity = 30/65 (46.15%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 MAAEGKGKEKVPVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAEL 195
            M+   K + K  V EI+EEDDEFEEF +  W E  E+ ED Q W DD        +F  QLR EL
Sbjct:    1 MSKNAKEETKQQVNEIVEEDDEFEEFEDEGWMERKEEPEDKQYWADDWDNDDINEEFAAQLRTEL 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1941.5759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJS1_ECTSI1.380e-2684.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CP29_9STRA4.770e-1358.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1ZHX0_TRICV3.010e-1052.38Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4EAY6_9STRA1.050e-958.93Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A6A3T8R4_9STRA2.910e-946.91Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8J5X4N4_DIALT1.750e-858.49Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0U2T7H1_9MAXI1.490e-751.92Putative 26S proteasome complex subunit DSS1 n=1 T... [more]
I1CD22_RHIO91.570e-755.7726S proteasome complex subunit DSS1 n=2 Tax=Rhizop... [more]
A0A0D2WWT7_CAPO35.490e-743.24Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
L1J5M5_GUITC1.840e-646.15Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1941contigL-elsbetiae_contig1941:14021..19681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog65071.PYU1_T012479
KEGG koko:K10881
KEGG Pathwayko03050,ko03440,ko05169,map03050,map03440,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DSS1_SEM1
EggNOG OGs1MI59@121069,2E19H@1,2S8ME@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051,ko03400,ko04131
Ec32 ortholog descriptionDSS1/SEM1
Ec32 orthologEc-12_003050.1
Exons3
Model size246
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1941.5759.1prot_L-elsbetiae_contig1941.5759.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1941 14021..19681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.4925632-CDS-L-elsbetiae_contig1941:14020..141311622815805.4925632-CDS-L-elsbetiae_contig1941:14020..14131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 14021..14131 -
1691683114.2665617-CDS-L-elsbetiae_contig1941:14020..141311691683114.2665617-CDS-L-elsbetiae_contig1941:14020..14131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 14021..14131 -
1622815805.5060503-CDS-L-elsbetiae_contig1941:19171..192341622815805.5060503-CDS-L-elsbetiae_contig1941:19171..19234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 19172..19234 -
1691683114.2785068-CDS-L-elsbetiae_contig1941:19171..192341691683114.2785068-CDS-L-elsbetiae_contig1941:19171..19234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 19172..19234 -
1622815805.5162854-CDS-L-elsbetiae_contig1941:19609..196811622815805.5162854-CDS-L-elsbetiae_contig1941:19609..19681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 19610..19681 -
1691683114.2885559-CDS-L-elsbetiae_contig1941:19609..196811691683114.2885559-CDS-L-elsbetiae_contig1941:19609..19681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 19610..19681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1941.5759.1

>prot_L-elsbetiae_contig1941.5759.1 ID=prot_L-elsbetiae_contig1941.5759.1|Name=mRNA_L-elsbetiae_contig1941.5759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MAAEGKGKEKVPVTEILEEDDEFEEFAEANWDESAEDQEDLQQWQDDWDD
DDMDDDFCNQLRAELEKTRSGAAASKGQAKP*
back to top

mRNA from alignment at L-elsbetiae_contig1941:14021..19681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1941.5759.1 ID=mRNA_L-elsbetiae_contig1941.5759.1|Name=mRNA_L-elsbetiae_contig1941.5759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5661bp|location=Sequence derived from alignment at L-elsbetiae_contig1941:14021..19681- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGGAAGGAAAGGGCAAGGAGAAGGTGCCCGTCACCGAGATTCT
AGAGGAGGACGATGAATTTGAGGTGAGACGAGAAAAAGGAGTCTGAAGTG
CTGGTTGTTTCGCCGGAGAGGTTGCGTGCTTTGCAATTTGAATGTCGGTG
TGTCGAAAGCCTTTTCAGGGGTGGATTTATTTGTCTGAAGAAATCTGATA
TATCCACCTGCGTCGCTGATGCGACGACGGCCTACCGCGGTAAAAACAGC
AGTAGTGTGAGCAGATCTAGTTCCCCTCATCAGCACAACAACGAACAATA
AAATTGTCTCAAGGGATGCAAATCATGCAAAGTCGAAAAGGTCGCCTTGG
ACGAATGACGGGAGTTCTGTGAGTTGATAAATACTCTTGAAAGATAAGCA
AATACCCTTGTTTCCGACCCCATCTACATATCCGCGAATTATCTCAGGAG
TTTGCTGAGGCGAATTGGGACGAGTCTGCCGAGGACCAGGAAGACCTCCA
GCAGTGGCAGGTGAATCCCAATCCCACACAACTGCTCCTCTTTTGCGCGC
GGTCGAAAGAAAGAAACCTCGTTTTTGTTCTATCTGTGAGCACAATCCTA
TAACATACCGCCGAGACTAGGCTCGTGACAGGCCGCAAGGTGAGCAGCCC
AGAAAACGCGGCGGGAATATTCGAAAAAACCGGGTCCGCACACCAGATAT
CAGATATCAGATACACACATACGTGTTCTCTGTTCTCCGCGCTGAAAGAG
ACTTTTGCAGAAGTCCACCCAGCAGCAGAACACGCACCGTGGCCGTGTCG
CCGCCCGATAACACACGGGGACGTCTGCTGGCACACTAGAAAGCTTCATC
GGCCCTCAAAACATCACTGCTAGTGTTCGCTCGACACTTTTTTCTCCTTT
GTAGCGCTGTCCCGGGCCCTGAACTCCTCTGAAAGCACTCTAAATTCAGT
ATATACCAGATTATCACCAAAAATGATCACTAAATTGGCGCCAAAGTCCC
CTGCGGCAATAGCGTACTTCTGCAACTTCTTGGGGGGCCGCCGGATAGAG
TCCCGCCTCTGGCGCTCGGTTACTTTGCAATAATACCCAACGGCAACAGC
AAGTAGATCGATACCGGTTGCTGGTGTATGTAGACGGAAATCGAAGAGGT
GTTTCGATGTGCTGTTGTGATATATAGGTACTTGTGCTGGTGGTGTGGGT
GTGTATGTGTGTTTGGCACGCTGCGTCATGTGATGTGTGGGATGAGAGCG
AGAAAGCAAAACCGATTTCGTCAATAACCCCCCAACTACCAAATGCAACA
GCCAAGCAGCGGCGGCGGCGGCAGCTGTAGCACCTGCCGACTAGCCCAGT
TCCGCACAAAACCAGGCGTCTCAATGATCATTTTTTATATTCACTAAAAC
CCGCTTGAAGTCCCAGAAGGGTTAACCGCGAGATGAAAGGGACATATACA
GCAGTGTAGTAGCAGTTCATGGCCGCTTGCTCCCACCCGTATTTTCTGAA
AAAAAATCAAGAAATCAAGGGGAAAACTCCCATTCTCGTTGTGCTACCCG
CTACAATATTGTAGAAAATAGAGTTTCGATCGCCCGAAACGGTCTGCGAG
TTTTTTTTTATCATGCCGACACATTTTTTGGCTTCGCGGAAAGTACTGCC
GTTGTGAACCCCGGGGCCCTGGGGAGGTGGGGGGGGGGGCAGGGGAGGCT
ACAGCACGCAAGTCTCTGTTGTGCTGCTTGTTGTATGTCCTACTGTCAGT
ATCACTGCTTGATCGTATTCCTTCTAGCCGAGGTAGTGCCTTGATCGAAG
CAGCAACACCTTGCTGGCTGAGGGACGGGCCTACTTAATGTAGTTTTCGT
GAAGTCTCGGTCGTACGGGTGTGCGTCCCTTGATCGGCACCACTGCACAG
GTAAAACATGCGCGGGAACCATTTTAACCCCGTCGCCCTTTCAGATGGCA
TGGGTCCTCAAGCCTCTTTGTCTGTGGAGGTGGACGTGGGGGTGCACGTG
AGGGTATTTGTCGATTGGTTGCAGCTGCCTCTCTCTCAACCAGGAAGCGA
TGTGGCATGTACATGACATCCGACATTTTGTTTCCCACGCCTACTGCTTC
GCTTGCGACAATAGAGGTAACTAATACGAGTATGACGATATTAAAAGTCT
TTAGATCTGGGTCGCTGACAAAGCAGCGGCGCAATTCGACCCCCCTTGAA
AGCAGTACGTTAAGCGTTGCCTCCGTCAGCGACCACCCGCCAGCACCGCC
CGACTTCCCCTTGCACGACGTCAGCGACAAAAGTCTTTCCAACACGGACC
CGTTGCCGCAGGATCGAGTCTAAACGCGTTCGGGCCAGGCGAGCAACGCC
GAGCAACGTCTCAAAAGTTTATTTTACTCTGCAAACCCAGCAGCAAAAAG
TTGTGACTGCACAGCAAACTGTTGGTCCGCAATTCGGCACTTCCAAGCAT
TCGGTGGGGTGTGCGTGTCGGGTGTGTGGTGTGGGCGTGTTAAAAAATAC
CACACGCGCCCCCACAAACATCATGTCGCAGAATCTGCACAGGCAGGGTG
CTAGCACATGAGACTCGACGCGTGAGCCGACGAGCTACAGCACCACCGTG
TAAAGGATATGCCTAAAACAACATCTTGCGCAGAACTGTTTAGTTTGTCG
GTTTGTCGACGTTTTGTTTCGCCGCTGCCAGTGTGGTTTGCATGCAGAAT
AAGTCCAACGTCTGCTTCTACTCAGCTGGAAGGACAGGCCCCAAAGAGCA
ACCCTTGGGCTTTCAGAGGCGCCACACCGCCACAGCACCGAATGTGTCAG
AGAGTTCATGCATAGAGGATCCGAATACAAAAAAGCTAGGGTTCACAACG
TCCCCTGTGGCAACATAGATATACTCCGCATATCCGAAATTGTAGGAGCT
TGCATCCATCCGGCCGTTGCAGTTTACAACGTGCGTGTCAGCGCATGATT
GGGGCTGCGATTTGCATAATGAGCACCTCTGACTCTCAGTGATGGTAAAA
CTCTTTGGTTTACCATGTTACGCGAAGATGGCTGTTTTTGTGTCATGTCT
CATTTGTTTTGGTGATCATACGTTCCGCTCTCCATCCGTCACCGCTGAAC
AAAAAGATAATTCGCGTTGTTCTCAGATGGGAACATTAGCTTATATCTAT
ATTGAATGTACAGCCAGTAGTAGTGCGTGTGTGTGTGTTGCCTTCACACT
CAAAACCGTTATGATCTCTCTATCCAGCACACCTCCATGAGTGTATACTA
ATCCAACACTGACGCGGTCGATTTCCGTGGTCACAGGATAATTAGCCTAA
AAAAGGCGGGTATAGACTAGGTAAATACTGAAAATGAAAAGAAATGAAAT
GGACCTTTCCGGGAAACCCCACTACACGCACGCTCAGTTCGTCTTCGTCT
TACCACGCGTCATCGCACCCTCCCTACCTATGACGCAAAGGGTATAGTGG
CGACAGCTGCAGGGTGAAGGTACTTTCGCAGCGCCCAAAGAAAAAGCGGT
GTCGAAACTTAATTGTAGCGCACTCTTCGTTTTAGCGGCACCTTGGGTGC
ACGGGGTGCTGGGGCCAAACAACACTTTGGCTGCAACTGTAGACCCGTGC
CACTTCTGATGTACTCCTGAAATTACCCTATAAATCGCCGGGGTAGCCTA
GCCTCGTCTAAATCCCCATCCTCTTTTCGGATGGTGACGTTGGTTGCGTG
AAGATGCGAGGTAAGAAGATGCGAGAAGAGAGAAGAGATGATAGATATAC
TCGGACGTCACCTAGATGGGAAACTGCAGATATAGTCCTGCGGAGATGCG
GTGGAATCAGGGCGGGGATTTGTGGGGGATATGTGTTGGTGTTTGGTGTT
GTGTCGGGGTACCACTACAATTGTGTGGCCCCTTATTGTGCCGCATGTGG
GAGTCGTCTCCTCGGCCTAGACAACTGACCGATAATACACGAACCATCCC
GACCGACAAGGTCGACTGCCTTTATACCGTGCGCCCCCTCGAGCTGGGGA
CCCAGCACCTCACGATTTACCTATTAAGAGAGATTCGGGAGATAGTATTA
TCTTGGGCCTATTATCTTCTTTGGGGAATTCCCAAAAGACACACAGCAGA
CAGGCTCTCCTTCCCTTTTTGTAGGAGAAGTGCGGAGGTGTGCTCCTCCG
TAAAATTCTACTAGACCCTTTGATGTAGAAACCGACAGGGAGTGGGCGAG
GCAAGATGCGAGGAGAGAGAAGAGAGATTCGGGAGAGTATCTAGTCGTAG
TATCTTTGGTAAATTCCAAAAAAGACACAGCACACCTCCGTACTAGAGGA
CCTTTGTATTCGGAGCCACACAGCCGGGGTACCAACTCCTCGTAACTTCA
TTAAGCTGTGTGCGATGCAAGAAGTGTGTGTGTGTGCTGTGCGGTGGCGG
TGTGACACCAAATCCATCCCCAGTTTACACCCTTCCCTGGCGCATTCCAC
TTTTGAGTTGACTCCCCCCCCCATCACGCTCTCGCGAACCCCCTTTTGTT
TTTTGGTCCGCTGTTGAATCGCGTAACCAACACGCAGCAGGCGTGCTCTC
GGCGCAGGGTAAAGCCATACCTCTAGAAAGCTGTGCCGACACCCGACACC
GGCAGTGACATGTGCAATAGGCTGAGACTGCTGAATGGTAGCGATGATGG
ATAGGTGGACCAACCCGTTGATATATTTTTTAGTTTTTGACCGCTCTCTT
GCAGGACTCGTCCAAAACACCTCGAGCAACGATGTCACCTCGACTGGGCG
ATTCACCGCATTACGCGAGCACGCTCTCTCGCGATCCCAAAACCTGACGC
GGCCGCCCTTTGTGATACATAGATAGGGAAAGCCGCGAGCTGTGGAGTAG
AACCTTCCTGCTTGTGTCGCTGACTTGATCGCCGAAGTTGGATACCGAGG
TTAAAATATGAAGACTCCCTGAAACACTGATCTGCAAGGAGACCACCACC
GAGGTTCAGGACACAGGCTTGATTTTCTCCCAATCGGCTACAACGATTCC
GACGTAACTCGGCCACACGATGTACGACAACCTTAGCTACAGCGCCAGCG
GCTCGCAGCTGTGCTCCCAAGGGTGCAACACAGATAAATACCGATTTGAC
CGAGATTTGGGGTGGTTTGTGGTCGCTATCTCACGCGCCCGGCGTCGGCG
AGAAGGGAAATTGGGGGGGCACAACCTTGAGGCCCACATACGTTCACCGG
CGAAAACTGACGTCCATTGGTGGCGTGAGCGGCGAGAAAACGGGATGACG
CGTTTTGGGCCAAAAGCTACTACGAAAAACGCGGCGGGTTACATGGCCAA
ACACGCGGCGGGTTTAGCCTTATAGGTCTGGATCGTTTGGTTTGAGAAAA
CCAAATACCACCAAAGTGGATTTAGAGCTTTTCAGACGCGATGGCTTCTG
CCACTCAGAACTCTCCGCTCGTCGCATGTGCGCGCTTGATTACTATAATT
CACTGCCCCACTCCCGCTAATCTTCGTGATGTCCTTCCTGCGTTGCGAAT
GTGGTTGTCGATGGTTCTGTCCCTTTTTACGCGTTTGCCTGCATCGCAAG
GACGACTGGGATGACGATGACATGGACGACGACTTCTGCAACCAGCTCAG
GGCGGAGCTCGAAAAGACGAGGTCGGGAGCGGCGGCATCAAAAGGACAAG
CCAAACCATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1941:14021..19681-

>mRNA_L-elsbetiae_contig1941.5759.1 ID=mRNA_L-elsbetiae_contig1941.5759.1|Name=mRNA_L-elsbetiae_contig1941.5759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig1941:14021..19681- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGGAAGGAAAGGGCAAGGAGAAGGTGCCCGTCACCGAGATTCT
AGAGGAGGACGATGAATTTGAGATGGCCGCGGAAGGAAAGGGCAAGGAGA
AGGTGCCCGTCACCGAGATTCTAGAGGAGGACGATGAATTTGAGGAGTTT
GCTGAGGCGAATTGGGACGAGTCTGCCGAGGACCAGGAAGACCTCCAGCA
GTGGCAGGAGTTTGCTGAGGCGAATTGGGACGAGTCTGCCGAGGACCAGG
AAGACCTCCAGCAGTGGCAGGACGACTGGGATGACGATGACATGGACGAC
GACTTCTGCAACCAGCTCAGGGCGGAGCTCGAAAAGACGAGGTCGGGAGC
GGCGGCATCAAAAGGACAAGCCAAACCATAAGACGACTGGGATGACGATG
ACATGGACGACGACTTCTGCAACCAGCTCAGGGCGGAGCTCGAAAAGACG
AGGTCGGGAGCGGCGGCATCAAAAGGACAAGCCAAACCATAA
back to top