mRNA_L-elsbetiae_contig1941.5757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1941.5757.1
Unique NamemRNA_L-elsbetiae_contig1941.5757.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 8.480e-123
Identity = 208/273 (76.19%), Postives = 220/273 (80.59%), Query Frame = 2 
Query:   41 MFRRKSNKPEAKKKRAWEVDVEADDNNEDGDETAASPSEAFLSLQKELEEKEIIQKENEERIQNEHVVAAEAAKSLRRKEEVRKANAKNPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVV--PKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQIPDE 853
            MFRRK NKPEAKKKRAWEVDVEADD +E GD+T  +PSEAFLSLQ+ELEEKE IQ+EN ER +N+  +AAEAA SLRRKEEVRKAN KNPRVFLDIEIAD TG KSRL KGK  GR+TLELFENAVP+TAENFRALCTGEK  G      ++ G      V  P               GGESIYGPTF DESF  KHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVR IEDCGTTSGEPTKRVQIAECGQIPDE
Sbjct:    1 MFRRKPNKPEAKKKRAWEVDVEADDKDE-GDDT--TPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAANSLRRKEEVRKANTKNPRVFLDIEIADTTGAKSRLAKGKNAGRVTLELFENAVPRTAENFRALCTGEKV-GRERESDTWCGATSRTEVKPPDLNLTAYPPCPRCSCGGESIYGPTFVDESFQLKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIPDE 269
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A7S2SRD0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRD0_9STRA)

HSP 1 Score: 229 bits (583), Expect = 5.660e-67
Identity = 140/270 (51.85%), Postives = 174/270 (64.44%), Query Frame = 2 
Query:   44 FRRKSNKP-EA-KKKRAWEVDVEADDNNEDGDETAASPSEAFLSLQKELEEKEIIQKENEERIQNEHVVAAEAAKSLRRKEEVRKANAKNPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQIP 847
            FR+   KP EA ++KRAWE+D E D    D + +    S+AFL L+++LE +    K+ E+R Q      A AA         R        VFLDIE      TK+R      VGR+ +ELF + VP+TAENFR+LC+G+  RG     L +  NIFHR++P FMAQGGDITREDGSGG SIYG TF DES L KHD+PG+LSMANSGR +NNSQFF+TF P PWLD KHVVFG+VV G  V++ IE  G+  GEP ++V IA CG IP
Sbjct:    4 FRKPKGKPGEAPRRKRAWELDQEEDVKAAD-EGSERQTSKAFLQLRQDLEARAQRVKDAEKRQQEGTKTPARAAPXXXXXXXDRIC------VFLDIE------TKARGKHAVPVGRLKIELFNDLVPRTAENFRSLCSGDH-RG-----LWYRDNIFHRIIPGFMAQGGDITREDGSGGRSIYGETFEDESLLGKHDKPGILSMANSGRHTNNSQFFLTFKPTPWLDGKHVVFGEVVAGFSVLKSIERAGSKEGEPKEQVIIASCGAIP 254
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A388MFL0_CHABU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MFL0_CHABU)

HSP 1 Score: 225 bits (574), Expect = 7.670e-67
Identity = 107/180 (59.44%), Postives = 132/180 (73.33%), Query Frame = 2 
Query:  305 NPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            NP VF DI I            G+KVGRI +EL++N VP+TAENFRALCTGEK  G SG PL + G  FHRV+PKFM QGGD TR DG+GGESIYG  FADE+F  KH +PG+LSMAN+G ++N SQFF+   P PWLD KHVVFGKV++GM+VV  +E  G++SG  ++ V IA+CGQ+
Sbjct:    3 NPTVFFDITIG-----------GRKVGRIVMELYKNVVPRTAENFRALCTGEKGTGRSGRPLHYKGCTFHRVIPKFMCQGGDFTRGDGTGGESIYGAKFADENFQHKHTEPGVLSMANAGPNTNGSQFFLCTVPTPWLDGKHVVFGKVIQGMDVVAKVESVGSSSGRTSQPVVIADCGQL 171
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A7S2V5N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N2_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.910e-66
Identity = 130/271 (47.97%), Postives = 171/271 (63.10%), Query Frame = 2 
Query:   50 RKSNKPEAKKKRAWEVDVEADDNNEDGDETAASPSEAFLSLQKELEEKEIIQKENEERIQNEHVVAAEAAKSLRRKEEVRKANAKNPRVFLDIEIAD-----DTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPR-GSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            +K  K + K+K  W+ + E + + E+     A PSEAF+ LQK+LEEKE I+KEN  R+     +  E+   L   E  +  +  NP VF+D+ + +     D     R  + ++ GR+  EL     P+TAENFR LCTGEK R      PL +LGNIFHR++P FMAQGGDIT EDG+GGESIYG  F DE+FL KH   G LSMANSG  SN+SQFF+T GP   LD KHVVFG+++EG + +R+IE  GT SGE  K+V I  CG++
Sbjct:   12 KKDQKQKLKRKPKWQQEQEDNSSEEE-----AVPSEAFMKLQKDLEEKERIKKEN--RVSKRGDIKKESHNEL---EPAQHESGPNPVVFMDVSVREKGVSYDQNGIPRKQQEQQRGRLVFELLSAVAPRTAENFRCLCTGEKGRIPGKSLPLHYLGNIFHRIIPGFMAQGGDITHEDGTGGESIYGGKFRDENFLLKHHSAGQLSMANSGPHSNSSQFFLTLGPARHLDGKHVVFGQMLEGEDFLRIIESAGTKSGETIKQVTIDGCGEL 272
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A146LV45_LYGHE (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LV45_LYGHE)

HSP 1 Score: 224 bits (570), Expect = 3.740e-66
Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 2 
Query:  290 KANAKNPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            K   K  RVF DIEI             K VGR+T +LF++ VPKTAENFRALCTGEK +G+SG PL F  +IFHRV+P FM QGGD TR +G+GGESIYG  FADE+F  +HD+PGLLSMAN+G ++N SQFFIT  P PWLD KHVVFG+V +G ++V+ IE  GT +G P  R+ I +CG++
Sbjct:    6 KKRKKMKRVFFDIEIGQ-----------KAVGRVTFKLFDDVVPKTAENFRALCTGEKGKGASGKPLHFKNSIFHRVIPDFMIQGGDFTRHNGTGGESIYGEKFADENFRLRHDKPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGQVEDGFDIVKKIEQQGTANGSPRTRIVITDCGEL 179
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A455B6L4_PHYMC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455B6L4_PHYMC)

HSP 1 Score: 223 bits (567), Expect = 8.450e-66
Identity = 112/182 (61.54%), Postives = 131/182 (71.98%), Query Frame = 2 
Query:  299 AKNPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            AKNP+VF DI I            GK  GRI  ELF+N VP+TAENFRALCTGEK RG SG PLS+ G  FHR++P+FM QGGD T  +G+GGESIYG  FADE+F  KH +P LLSMANSG ++N SQFFIT  P PWLD KHVVFGKVVEG +VV+ +E  GT SG   + V IA+CGQ+
Sbjct:    2 AKNPQVFFDITIG-----------GKPAGRIVFELFKNIVPRTAENFRALCTGEKGRGVSGKPLSYKGCSFHRIIPEFMCQGGDFTNFNGTGGESIYGMKFADENFELKHTEPFLLSMANSGPNTNGSQFFITTVPCPWLDGKHVVFGKVVEGTDVVKQMEQQGTRSGTVKQPVVIADCGQL 172
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A0B6ZH80_9EUPU (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZH80_9EUPU)

HSP 1 Score: 222 bits (566), Expect = 1.180e-65
Identity = 109/180 (60.56%), Postives = 130/180 (72.22%), Query Frame = 2 
Query:  305 NPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            NP+VF DI I           +GK  GRI  EL++N VPKTAENFRALCTGEK  G+SG PL F G+ FHR++P FM QGGD TR +G+GGESIYG  FADE+F  KH  PGLLSMAN+G ++N SQFFIT  P  WLD KHVVFGKVVEG+ +V+ IE  G+ SG+P   V IAECG++
Sbjct:    5 NPKVFFDITI-----------QGKSAGRIVFELYKNIVPKTAENFRALCTGEKGTGASGKPLHFKGSSFHRIIPDFMLQGGDFTRGNGTGGESIYGEKFADENFTEKHTIPGLLSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVEGLSLVKTIEAQGSGSGKPKATVTIAECGEL 173
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BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: UPI0018FE4581 (peptidylprolyl isomerase n=1 Tax=Streptomyces sp. NRRL F-5126 TaxID=1463857 RepID=UPI0018FE4581)

HSP 1 Score: 220 bits (561), Expect = 5.810e-65
Identity = 107/180 (59.44%), Postives = 130/180 (72.22%), Query Frame = 2 
Query:  305 NPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            NPRV+ D+ + D              GRIT ELF + VPKTAENFRALCTGE+  G SG PL F G+ FHRV+P+FM QGGD TR DG+GGESIYG  FADE+F  KHD PG+LSMAN+GR++N SQFFI   P PWLD KHVVFGKV++ ME+V+ IE  G+ +G+ TK V I+ CGQ+
Sbjct:    2 NPRVYFDMTVGDVAA-----------GRITFELFADVVPKTAENFRALCTGERGVGKSGKPLHFEGSKFHRVIPQFMCQGGDFTRGDGTGGESIYGGKFADENFDLKHDVPGILSMANAGRNTNGSQFFICTVPTPWLDGKHVVFGKVIDNMELVKTIESVGSQNGKTTKDVVISACGQL 170
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A0A833VE85_9POAL (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VE85_9POAL)

HSP 1 Score: 220 bits (561), Expect = 6.200e-65
Identity = 104/180 (57.78%), Postives = 131/180 (72.78%), Query Frame = 2 
Query:  305 NPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            NP+V+ D+ +            G   GRI +EL+ + VP+TAENFRALCTGE+  G SG PL F G+ FHRV+P FM QGGD TR +G+GGESIYG  FADESF+RKH  PG+LSMAN+G ++N SQFFI   P PWLD KHVVFG+VVEG++VV+ IE  G+ SG  +KRV +A+CGQ+
Sbjct:    3 NPKVYFDMSVG-----------GTSAGRIVMELYADVVPRTAENFRALCTGERGVGKSGKPLHFKGSSFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADESFVRKHTAPGILSMANAGPNTNGSQFFICTVPTPWLDGKHVVFGQVVEGLDVVKAIESVGSRSGATSKRVVVADCGQL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Match: A2DT06_TRIVA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DT06_TRIVA)

HSP 1 Score: 220 bits (561), Expect = 6.410e-65
Identity = 103/181 (56.91%), Postives = 128/181 (70.72%), Query Frame = 2 
Query:  302 KNPRVFLDIEIADDTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPLSFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCGTTSGEPTKRVQIAECGQI 844
            K P+ F DI I           +G KVG+I  ELF + VPKTAENFRALCTGEK  G SG PLS+ G +FHR++P+FM QGGD TR +G+GGESIYG  F DE+F  KHD+PGLLSMAN+G ++N SQFFIT    PWLD  H VFG+V+EGM++V+ IE CGT SG P     + +CG++
Sbjct:    3 KRPKTFFDISI-----------RGDKVGKIVFELFNDIVPKTAENFRALCTGEKGIGKSGMPLSYKGTMFHRIIPQFMIQGGDFTRFNGTGGESIYGMKFDDENFKVKHDKPGLLSMANAGPNTNGSQFFITTVETPWLDGHHCVFGQVIEGMDIVKQIESCGTESGRPRAMCMVTDCGEM 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1941.5757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J2_ECTSI8.480e-12376.19PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S2SRD0_9STRA5.660e-6751.85Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A388MFL0_CHABU7.670e-6759.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chara ... [more]
A0A7S2V5N2_9STRA1.910e-6647.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A146LV45_LYGHE3.740e-6657.84Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A455B6L4_PHYMC8.450e-6661.54Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physet... [more]
A0A0B6ZH80_9EUPU1.180e-6560.56Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
UPI0018FE45815.810e-6559.44peptidylprolyl isomerase n=1 Tax=Streptomyces sp. ... [more]
A0A833VE85_9POAL6.200e-6557.78Peptidyl-prolyl cis-trans isomerase n=1 Tax=Carex ... [more]
A2DT06_TRIVA6.410e-6556.91Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tricho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1941contigL-elsbetiae_contig1941:2806..8233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.5
Seed ortholog evalue6.7e-102
Seed eggNOG ortholog2880.D7G2J2
KEGG koko:K01802
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-12_001720.1
Exons7
Model size1926
Cds size1032
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.2503166-UTR-L-elsbetiae_contig1941:2805..36591622815805.2503166-UTR-L-elsbetiae_contig1941:2805..3659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1941 2806..3659 -
1691683114.0605867-UTR-L-elsbetiae_contig1941:2805..36591691683114.0605867-UTR-L-elsbetiae_contig1941:2805..3659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1941 2806..3659 -
1622815805.343765-UTR-L-elsbetiae_contig1941:8193..82331622815805.343765-UTR-L-elsbetiae_contig1941:8193..8233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1941 8194..8233 -
1691683114.1637795-UTR-L-elsbetiae_contig1941:8193..82331691683114.1637795-UTR-L-elsbetiae_contig1941:8193..8233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1941 8194..8233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.2607124-CDS-L-elsbetiae_contig1941:3659..39861622815805.2607124-CDS-L-elsbetiae_contig1941:3659..3986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 3660..3986 -
1691683114.0768557-CDS-L-elsbetiae_contig1941:3659..39861691683114.0768557-CDS-L-elsbetiae_contig1941:3659..3986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 3660..3986 -
1622815805.2703862-CDS-L-elsbetiae_contig1941:4481..45641622815805.2703862-CDS-L-elsbetiae_contig1941:4481..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 4482..4564 -
1691683114.089814-CDS-L-elsbetiae_contig1941:4481..45641691683114.089814-CDS-L-elsbetiae_contig1941:4481..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 4482..4564 -
1622815805.2803874-CDS-L-elsbetiae_contig1941:4876..49681622815805.2803874-CDS-L-elsbetiae_contig1941:4876..4968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 4877..4968 -
1691683114.0973601-CDS-L-elsbetiae_contig1941:4876..49681691683114.0973601-CDS-L-elsbetiae_contig1941:4876..4968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 4877..4968 -
1622815805.2900019-CDS-L-elsbetiae_contig1941:5393..55001622815805.2900019-CDS-L-elsbetiae_contig1941:5393..5500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 5394..5500 -
1691683114.1059642-CDS-L-elsbetiae_contig1941:5393..55001691683114.1059642-CDS-L-elsbetiae_contig1941:5393..5500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 5394..5500 -
1622815805.303014-CDS-L-elsbetiae_contig1941:5853..60391622815805.303014-CDS-L-elsbetiae_contig1941:5853..6039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 5854..6039 -
1691683114.1152654-CDS-L-elsbetiae_contig1941:5853..60391691683114.1152654-CDS-L-elsbetiae_contig1941:5853..6039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 5854..6039 -
1622815805.3186922-CDS-L-elsbetiae_contig1941:6421..66161622815805.3186922-CDS-L-elsbetiae_contig1941:6421..6616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 6422..6616 -
1691683114.1326666-CDS-L-elsbetiae_contig1941:6421..66161691683114.1326666-CDS-L-elsbetiae_contig1941:6421..6616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 6422..6616 -
1622815805.331918-CDS-L-elsbetiae_contig1941:8151..81931622815805.331918-CDS-L-elsbetiae_contig1941:8151..8193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 8152..8193 -
1691683114.1447606-CDS-L-elsbetiae_contig1941:8151..81931691683114.1447606-CDS-L-elsbetiae_contig1941:8151..8193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1941 8152..8193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1941.5757.1prot_L-elsbetiae_contig1941.5757.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1941 3660..8193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1941.5757.1

>prot_L-elsbetiae_contig1941.5757.1 ID=prot_L-elsbetiae_contig1941.5757.1|Name=mRNA_L-elsbetiae_contig1941.5757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
MFRRKSNKPEAKKKRAWEVDVEADDNNEDGDETAASPSEAFLSLQKELEE
KEIIQKENEERIQNEHVVAAEAAKSLRRKEEVRKANAKNPRVFLDIEIAD
DTGTKSRLTKGKKVGRITLELFENAVPKTAENFRALCTGEKPRGSSGFPL
SFLGNIFHRVVPKFMAQGGDITREDGSGGESIYGPTFADESFLRKHDQPG
LLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRMIEDCG
TTSGEPTKRVQIAECGQIPDESEKNEEEEGGEEEEEEEEEERRKRKAGDE
QEGEEEGEREGGRREKKRTRVRFAKSDGGAASKRDAKGDEESK*
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mRNA from alignment at L-elsbetiae_contig1941:2806..8233-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1941.5757.1 ID=mRNA_L-elsbetiae_contig1941.5757.1|Name=mRNA_L-elsbetiae_contig1941.5757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5428bp|location=Sequence derived from alignment at L-elsbetiae_contig1941:2806..8233- (Laminarionema elsbetiae ELsaHSoW15)
AGTGGCGGCTGCATGGAAGCGGCTGGGACTTCGTGCGAAGATGTTTCGAC
GCAAATCAAACAAACCAGAGGCAAAGAAGAAGGTGCGATATATGTCGTGG
CACCCAAAATCGCGGTACCACAGATATTGCCAGGACCTCCGACCATGTGT
GTAGCTTCTATTACTAGAAGATATGGGCGTGCTGCTCGAGGGAACGTAGC
AATAGAGTTCGAACATGATGATCCAAGTCGATGTCTTCTGTTTGATTAAC
TCTCTTCTCCCTCTTGGAGCACTAAATGCATCGATGGTATAGTTTTAGCC
GAAATACCGTCGTGTAGAACTCCTGTTGTAAAGGCCACCTTCCCGGTTAC
AATAGGATATGTCTACAAGTGCTGAGTGCGGGTGTATGTATGACTACTAC
TGTAGGGTTATAGAACGCCCCCCCCGCCTTGACGGGGCGGTGGGGCCAGA
ATGTATTGAAGACCTGGTGTGAAAATCGACAAGCCGCCGGAAGCCGAGGT
CTGTCGTCGGACGGAGTGTGCACGACTACCAGGACAACAACAGCAACAGT
AGTGTATCGAATAGTGCCGGTAGACAATGTTGCTGTGGTGCGTGACTCTC
TCTAAAAGTTATATTTTGGGCCTCCGGTGCCGATGTTCGTGATGAACTCC
GTAAAATGCTGCCCACGGTAGGATGGGTAAGAGATCACTCGTCGGTGCCG
TGGTGGTTAAAGCACTTGTGAGTGAAGGTGCAGCGGCGAGAGCATGGTCG
GAAATATAAAAAAAAATCGCGCCCGGGACTGTCAACTTTCTTTGCGGCAT
CGTGCGGGACACACAAGGCATGCATGCCGTCATTGGTTGCTGTGGTACAC
GCCACACCGCGCGTCCGCCTTTGTATGATACCCGCATCTGCACGAGCCAT
GCAAGAGTCGAAGGCTTTTCGATATAGACTCCCGCTGTGCCTGTTCTGTT
GCTGCTGTCGAAAGCGTTTCGTCAAATCGTTGCTACAGCTGCATATATAG
ACTATTGAAAATACAACAGAGAATCAAAGATGTTGGAATATATGTACTGA
TGTGCATCTTGTACGATGGGAGTTCGGGTGGTGGGTGGGTGCATTCCGCC
TCACGTGTGGTTTGTTTAACACATCCCATTCGTGCATGGCGACTGATGCT
ATTGCTGGTTTCTCTCCTGCGCAGGGCACGCTGCTTATTGTATGCACCGG
TTCTGTAAGATCATCGTCGCATACACGCTGTAAACCAGCCAAACGGCACT
GCAATGGACTCTTACCTATGGTCACTGTGCGGGGTTGATGTACGTTCCAT
CAGAGCTATCGTTGCAGCCGCCCATAACGTTTTCAACAGGAGAGAAAAGT
GTCGAGAAAAAAAACGGGGTTCTCTGTCTTCAAGTAAAACGACGGACGAC
GACCATTTCAAACTGTGTTGTATCAACATGATCTCGAATTTGATTAGACA
GATCATCGTCAGTTCAAGTGTCGGTGTGATGTTCTGTTCGTCAGAAAGTG
CTGCTTCGTATCACTTTGTAAAAAAAAAAATCGACCTTTTCGTTGGTGCA
AAACCATCAGGCCGCTCAACCTTTTGTCCGTTTGATCTTCGCCATTTCAA
CATTCAACCAAAACCAGAGAGCTTGGGAGGTGGACGTTGAAGCCGACGAC
AACAACGAGGACGGCGATGAGACCGCCGCTTCTCCAAGCGAGGCTTTTCT
CTCTCTCCAGAAAGAACTGGAGGAGAAAGAAATAATCCAGAAGGAAAACG
AGGAGAGGATACAAAACGAGCACGTGGTTGCTGCTGAGGCTGCGAAGAGC
CTGCGAAGGAAGGTCGGGCCCGGCATTTTTGGCCCTTGCAGCGATAAAAC
GCACAGCAGAACCCTCGCCTGCGACCTACAGTCCTGCAGCGGTAGCACCA
GTAGAAATACTGCCAGACCCACTGCTGTATACCTGTGATAACCTTCGAGG
TTTATTATGCGACGTTCGTGAGTTGCGCTCGTTTCGTTCGTTAACCTGTG
TGCGGGGGTGTTCTTTGTATGTAGCCTCTACATATACTTTTATCCACATC
TTCTGTGACGAATTGCGCCGGGTGATTTGTCTGTTCCTGAGAAACGTCGT
TACAATTTGTTGGAGTCGAGGACTGAAAAACGCTTGCAGCAGCAAGGTGC
GCGACTCTGAACGCCGCCAACATATCGCCCCCGCGCACAAGCAGGAAGAG
GTGCGGAAGGCCAATGCCAAGAACCCACGAGTGTTCTTGGACATTGAGAT
CGCCGACGATACAGGGACGAAGAGCCGATTGACCAAGGGGAAAAAAGTAG
GGCGGATCACGCTCGAGCTGTTTGAAAATGCGGTGCCAAAGACGGCGGAG
AACTTCCGTGCCCTTTGCACCGGCGAGAAGGTGAGCGTAATGTACGTGTA
CATAGCTCTGGCAGAAGGAGGGGGAACTTTTGCGCCTGTCATGTTCGGGG
TGGCCGGCGCTGTGAGCAATCACCCTGCACGTTGGCTGGGTGTTTCTCGC
CACGGTCGTCACGGCCGCCCCTAGCAGGTGGTTCGCTGGAGCACCACGTT
GGCTGCAGGACCAAGCTGCGAGTTGGACCGTGCGAGAGCCGCTGACCTCC
TGAGCAGTTTTCGTCCTCATTTCTCATACCCAGGGCATTGTATCTCCCCC
CCAACACACACACTCCTTTACACACACCGCCCTCCGTGTCCTCTCCATGC
TGCCCAACCCGCGAAACAAACACCGTCGTGCAGCCGCGGGGTTCGAGTGG
GTTCCCCCTGAGTTTTCTGGGAAATATTTTCCACAGAGTGGTGCCCAAGT
TTATGGCGCAGGGCGGCGACATCACGAGGGAGGACGGAAGGTGTGCGTGA
AGAGATAAATAGTTTGCAAAACAGTGACGGACTTTTTCGGGTTTGATTGA
AAATAACCGAAAGTGAGCTTCCTCGTGTTGTCTGCTTCCGTTCAGCCAGC
CCCCACCAGCAGGAGTTTGAGAGTTAAGTTCGGGCGGTTCGAGCTCGAAG
AGGGGGTGCCTCTCTTGATAATTGTTACGAAGTACAAAGGTTGCACGCAA
CAGGCGTTATTATGCAGTAGATTCGACGTAATTATGGCTTCTCGGATTAT
GTATGCTCGCACACCTAGTGTCCCCATTAACTGGTGATGTAGGGAGTGTC
ACATCGCGGGTCACACACAGAAATGAATGCCCCCAAAGTGACATCGTTTT
ATGTCCCCTTGTATTTTTTTTGGGGGGGTTCTGTTGCTGCGCTTCGCTTT
TTGTGTGTGCCGAAGCGGTGGAGAGTCCATCTACGGGCCGACGTTCGCTG
ATGAGAGTTTCCTTCGGAAGCACGACCAGCCAGGATTATTATCCATGGCA
AACTCAGGTGAGACGGTCTAAGAGAACGGGCGTGTCAGGAAGTTATCTGC
GTCAAAGGAGACGTGGCCCTCTCGTAGCCCCACCCCAAGATACCGCGCTT
CTCCGAAGGCTGTGGCGCTCTCTTCGAAATCGAGCACAGCTATGGTGTAC
TACCATCTCTTTTTTCCGTGGCGCCCTCCTCTCGCTTGCTCATTCGTTCG
TTTTATGCCCCGTCTGTCTAGTTATTTTGTCTCTGTGGCCTCCTTGAGCT
GCATCTGACTGTATTACGCCGTGGTCCTGTCGGTGTCGCCGCTGTTCTCC
GTGCGTTGGTCCTGGCCAGGCCGAGATAGCAATAACTCTCAGTTCTTCAT
CACGTTCGGCCCGCTTCCTTGGCTTGACTCAAAGCACGTCGTCTTCGGCA
AGGTATTGTACAGCAGTATGCCAAAAGGCATTGGTGTTCCACTGACTGTA
CCGCAATATAGCATGCAGGCACCGGTGTTGTTGATGCATGCCCTTTGGTC
TGAGAAGTGCCCAAAACGGACTTCTCGTGTTGTTCCTGTGTACACAAGTC
TGCAGCAGCCGTGGTTTACGGGGCTTTGCTACCAATCTTAGACAGTCTGA
AAGGGCGGCTGCAGATATTCAGTGATGCGCAGAATATGGGTGTACATCTA
CATACCTACAACAAGGCTCCCAGAGGGATGTAGCTGGTCAACCAAATCAT
ACGTACGAACATTGTGTTGGTAGGTCGAGTGTTGCTTGCACCATGTTCTC
TACATTTTAATAGGGAAGATCTGGGTCGAATTGCAAGGGTTCCATATCTA
AGCTTCCATGGTCCTCGGCTGCCCACCCTCCGTTCTTCCTTCCCCCCACT
CTTAACCCTTCCTTTCCCGTCCTTTGGCTGAATGGTCTCCCTGCAAGGTT
GTGGAAGGCATGGAAGTGGTGCGAATGATCGAGGACTGTGGTACTACCTC
GGGAGAGCCGACCAAGAGGGTGCAGATTGCCGAATGCGGGCAGATTCCGG
ACGAAAGCGAGAAGAACGAGGAGGAGGAGGGGGGGGAGGAAGAGGAGGAG
GAAGAGGAAGAAGAGCGACGGAAGCGAAAGGCGGGCGATGAACAAGAAGG
GGAGGAAGAGGGAGAGCGGGAAGGTGGGCGGCGAGAGAAGAAGCGGACAA
GAGTGCGGTTCGCAAAGAGCGACGGTGGTGCTGCCTCCAAGCGTGATGCC
AAGGGGGACGAAGAGTCGAAATAGGCCAGATGCGACACAATGAGGGGGGG
GGTAAATTGAAGGCGAGGGGTCCTGAAGGACAAGTGAGATTTAGATTGAT
GCGTCTCGCAGTCTGGCGCTTTAAACCTTGCCCTATATAGTGTAGTTTTG
ACTGCCAGCCGTGGAACGCTGCGGTCCGCGAAAGGTTGCCGCAGACTTTC
ACACGGCTCCTGCTGTGCTCGCCGTTGGCAAAGCCTCCGTTTGTGCCTGT
ACATGGTACGCTTGTCCGGAATTTCTCACGAAAAGAATGGTGGCTGCGTC
GGCTGAATTGCCGTTTTTTCTGTTGTTGAAACAGCCATGGTGTCCTGTCG
TGCTTCGTTTCGTAACAGTTGCATTTGGCAGATTTTGGCTGCTGTCCGGT
CTGATTGTGCTGCGCACACTGACTGTGCCGGCGAAAACCTGCTCCTTTGA
CTTATCGGTGTCACGTTATTGCTTCAGACGGGTGTACTCTCCCGCTTGTT
TTCTGGTCGTAGACAACCCTGCAACCAACGCTCATTAGTAGTACCATTTA
TACCCAAATCACGCCTACCTAGTGGGCTCTCATTCACAACAAGGAAACAT
TGATGCGAGACGCGAGCTTTACCCAAAGGCTCCACCGGCAGTCGGTACTC
TCCCGTTCTTGACCCTGCGATTCTCCAACCTCAACCTCCGGTCGTCCACA
TTTTTTTCTAGTTTTACCGGTCTTCGGCTGTCCGCCTTCGGCTTCTTGCC
CCCCTGTTTCTTCTCCTTCTCCCTCTTGGCGTCCAGCTTTTCCCGGAACT
TCCTGTACTCAACAGTTTCTGGGTTGAGATAGCGCGCATCCATCTCCCGC
TGTAACCTTGCCTTGTCTTCCGCTATCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1941:2806..8233-

>mRNA_L-elsbetiae_contig1941.5757.1 ID=mRNA_L-elsbetiae_contig1941.5757.1|Name=mRNA_L-elsbetiae_contig1941.5757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig1941:2806..8233- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCGACGCAAATCAAACAAACCAGAGGCAAAGAAGAAGATGTTTCG
ACGCAAATCAAACAAACCAGAGGCAAAGAAGAAGAGAGCTTGGGAGGTGG
ACGTTGAAGCCGACGACAACAACGAGGACGGCGATGAGACCGCCGCTTCT
CCAAGCGAGGCTTTTCTCTCTCTCCAGAAAGAACTGGAGGAGAAAGAAAT
AATCCAGAAGGAAAACGAGGAGAGGATACAAAACGAGCACGTGGTTGCTG
CTGAGGCTGCGAAGAGCCTGCGAAGGAAGAGAGCTTGGGAGGTGGACGTT
GAAGCCGACGACAACAACGAGGACGGCGATGAGACCGCCGCTTCTCCAAG
CGAGGCTTTTCTCTCTCTCCAGAAAGAACTGGAGGAGAAAGAAATAATCC
AGAAGGAAAACGAGGAGAGGATACAAAACGAGCACGTGGTTGCTGCTGAG
GCTGCGAAGAGCCTGCGAAGGAAGGAAGAGGTGCGGAAGGCCAATGCCAA
GAACCCACGAGTGTTCTTGGACATTGAGATCGCCGACGATACAGGGACGA
AGAGCCGATTGACCAAGGGGAAAAAAGTAGGGCGGATCACGCTCGAGCTG
TTTGAAAATGCGGTGCCAAAGACGGCGGAGAACTTCCGTGCCCTTTGCAC
CGGCGAGAAGGAAGAGGTGCGGAAGGCCAATGCCAAGAACCCACGAGTGT
TCTTGGACATTGAGATCGCCGACGATACAGGGACGAAGAGCCGATTGACC
AAGGGGAAAAAAGTAGGGCGGATCACGCTCGAGCTGTTTGAAAATGCGGT
GCCAAAGACGGCGGAGAACTTCCGTGCCCTTTGCACCGGCGAGAAGCCGC
GGGGTTCGAGTGGGTTCCCCCTGAGTTTTCTGGGAAATATTTTCCACAGA
GTGGTGCCCAAGTTTATGGCGCAGGGCGGCGACATCACGAGGGAGGACGG
AAGCCGCGGGGTTCGAGTGGGTTCCCCCTGAGTTTTCTGGGAAATATTTT
CCACAGAGTGGTGCCCAAGTTTATGGCGCAGGGCGGCGACATCACGAGGG
AGGACGGAAGCGGTGGAGAGTCCATCTACGGGCCGACGTTCGCTGATGAG
AGTTTCCTTCGGAAGCACGACCAGCCAGGATTATTATCCATGGCAAACTC
AGCGGTGGAGAGTCCATCTACGGGCCGACGTTCGCTGATGAGAGTTTCCT
TCGGAAGCACGACCAGCCAGGATTATTATCCATGGCAAACTCAGGCCGAG
ATAGCAATAACTCTCAGTTCTTCATCACGTTCGGCCCGCTTCCTTGGCTT
GACTCAAAGCACGTCGTCTTCGGCAAGGCCGAGATAGCAATAACTCTCAG
TTCTTCATCACGTTCGGCCCGCTTCCTTGGCTTGACTCAAAGCACGTCGT
CTTCGGCAAGGTTGTGGAAGGCATGGAAGTGGTGCGAATGATCGAGGACT
GTGGTACTACCTCGGGAGAGCCGACCAAGAGGGTGCAGATTGCCGAATGC
GGGCAGATTCCGGACGAAAGCGAGAAGAACGAGGAGGAGGAGGGGGGGGA
GGAAGAGGAGGAGGAAGAGGAAGAAGAGCGACGGAAGCGAAAGGCGGGCG
ATGAACAAGAAGGGGAGGAAGAGGGAGAGCGGGAAGGTGGGCGGCGAGAG
AAGAAGCGGACAAGAGTGCGGTTCGCAAAGAGCGACGGTGGTGCTGCCTC
CAAGCGTGATGCCAAGGGGGACGAAGAGTCGAAATAGGTTGTGGAAGGCA
TGGAAGTGGTGCGAATGATCGAGGACTGTGGTACTACCTCGGGAGAGCCG
ACCAAGAGGGTGCAGATTGCCGAATGCGGGCAGATTCCGGACGAAAGCGA
GAAGAACGAGGAGGAGGAGGGGGGGGAGGAAGAGGAGGAGGAAGAGGAAG
AAGAGCGACGGAAGCGAAAGGCGGGCGATGAACAAGAAGGGGAGGAAGAG
GGAGAGCGGGAAGGTGGGCGGCGAGAGAAGAAGCGGACAAGAGTGCGGTT
CGCAAAGAGCGACGGTGGTGCTGCCTCCAAGCGTGATGCCAAGGGGGACG
AAGAGTCGAAATAG
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