mRNA_L-elsbetiae_contig1940.5752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1940.5752.1
Unique NamemRNA_L-elsbetiae_contig1940.5752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1940.5752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1940contigL-elsbetiae_contig1940:13677..13979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.7294185-CDS-L-elsbetiae_contig1940:13676..139791622815804.7294185-CDS-L-elsbetiae_contig1940:13676..13979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 13677..13979 +
1691683113.7536824-CDS-L-elsbetiae_contig1940:13676..139791691683113.7536824-CDS-L-elsbetiae_contig1940:13676..13979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 13677..13979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1940.5752.1prot_L-elsbetiae_contig1940.5752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1940 13677..13979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1940.5752.1

>prot_L-elsbetiae_contig1940.5752.1 ID=prot_L-elsbetiae_contig1940.5752.1|Name=mRNA_L-elsbetiae_contig1940.5752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
VERPPRQSALVIPPPVVCSLSPLVYANVRNSVVRRAAGFIVHRNQAVSPL
ASDQKCDAVQPSSRLSPKSDAVQPSRFNSGGRSSGGSGGGGGGGLLPSLK
*
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mRNA from alignment at L-elsbetiae_contig1940:13677..13979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1940.5752.1 ID=mRNA_L-elsbetiae_contig1940.5752.1|Name=mRNA_L-elsbetiae_contig1940.5752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:13677..13979+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAACGCCCGCCCCGCCAGTCTGCCCTCGTGATCCCCCCCCCGGTTGT
TTGTTCACTTTCTCCACTTGTGTACGCTAATGTACGCAACTCCGTAGTTC
GCAGAGCAGCGGGCTTTATAGTCCATCGAAATCAAGCCGTGTCCCCCCTC
GCCTCCGACCAGAAATGCGACGCCGTGCAACCCTCCTCCCGTCTCTCGCC
AAAAAGCGACGCCGTCCAACCCTCGCGATTTAACAGCGGGGGGCGCAGCA
GTGGCGGCAGCGGTGGCGGCGGCGGCGGCGGCCTTCTTCCCTCTTTGAAA
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1940:13677..13979+

>mRNA_L-elsbetiae_contig1940.5752.1 ID=mRNA_L-elsbetiae_contig1940.5752.1|Name=mRNA_L-elsbetiae_contig1940.5752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:13677..13979+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAACGCCCGCCCCGCCAGTCTGCCCTCGTGATCCCCCCCCCGGTTGT
TTGTTCACTTTCTCCACTTGTGTACGCTAATGTACGCAACTCCGTAGTTC
GCAGAGCAGCGGGCTTTATAGTCCATCGAAATCAAGCCGTGTCCCCCCTC
GCCTCCGACCAGAAATGCGACGCCGTGCAACCCTCCTCCCGTCTCTCGCC
AAAAAGCGACGCCGTCCAACCCTCGCGATTTAACAGCGGGGGGCGCAGCA
GTGGCGGCAGCGGTGGCGGCGGCGGCGGCGGCCTTCTTCCCTCTTTGAAA
TAAGTCGAACGCCCGCCCCGCCAGTCTGCCCTCGTGATCCCCCCCCCGGT
TGTTTGTTCACTTTCTCCACTTGTGTACGCTAATGTACGCAACTCCGTAG
TTCGCAGAGCAGCGGGCTTTATAGTCCATCGAAATCAAGCCGTGTCCCCC
CTCGCCTCCGACCAGAAATGCGACGCCGTGCAACCCTCCTCCCGTCTCTC
GCCAAAAAGCGACGCCGTCCAACCCTCGCGATTTAACAGCGGGGGGCGCA
GCAGTGGCGGCAGCGGTGGCGGCGGCGGCGGCGGCCTTCTTCCCTCTTTG
AAATAA
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