mRNA_L-elsbetiae_contig1940.5750.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1940.5750.1
Unique NamemRNA_L-elsbetiae_contig1940.5750.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: D7FTY8_ECTSI (Putative tyrosine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY8_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 2.200e-120
Identity = 191/235 (81.28%), Postives = 204/235 (86.81%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRRRRGGDGRPDE-SSSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QVY+GVWRGTPVA+KVL+P AQR +    LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVP E  + +      RRG D      +SS  LTPQ+CWPWSV++KVAEG+ACGMWYLHQHEPFPILHRDLKSANLLLD  FN KICDFGLARLKAFT+ SA MTGNCGTVQWMAPEVLASE+YAEPADVYSF IVCWELLSRACPYDGMSQIQ
Sbjct:  870 QVYQGVWRGTPVAIKVLLPAAQRDLDEE-LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPEESIACSF-----RRGSDRSGTAGTSSRVLTPQECWPWSVIMKVAEGLACGMWYLHQHEPFPILHRDLKSANLLLDSSFNPKICDFGLARLKAFTN-SAAMTGNCGTVQWMAPEVLASEKYAEPADVYSFGIVCWELLSRACPYDGMSQIQ 1097
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A6H5KM77_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM77_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 1.870e-118
Identity = 192/236 (81.36%), Postives = 202/236 (85.59%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRRRRGGDGRPDES-SSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQV 705
            QVY+GVWRGTPVA+KVL+P AQR +    LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVP E     S     RRG D       SS  LTPQ+CWPWSV++KVAEG+ACGMWYLHQHEPFPILHRDLKSANLLLD   N KICDFGLARLKAFT+ SA MTGNCGTVQWMAPEVLASE+YAEPADVYSF IVCWELLSRACPYDGMSQIQV
Sbjct: 1022 QVYQGVWRGTPVAIKVLLPAAQRDLDEE-LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPEE-----SIACYFRRGSDRSCAAGPSSRILTPQECWPWSVIMKVAEGVACGMWYLHQHEPFPILHRDLKSANLLLDSSLNPKICDFGLARLKAFTN-SAAMTGNCGTVQWMAPEVLASEKYAEPADVYSFGIVCWELLSRACPYDGMSQIQV 1250
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A835ZK37_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK37_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.330e-85
Identity = 151/259 (58.30%), Postives = 171/259 (66.02%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*-----------------------LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASS-ASAGSRRRRGGDGRPDESSSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQV 705
            QVYRG WRGTPVA+KVL+  AQ R R                          L ADF AEV MLAALRHPN+CLFMGAC+ PP RAIVTEL+ RGSLW+ALR DR P  +    A AG                   TP + WPW  +++VAEG ACGM YLH+  P P+LHRDLKSANLLLD+   VKICDFGLARLKAFT++   MTGNCGT QW APEVLAS+ Y E ADVYSF +V WELL+R CPY+GMSQIQV
Sbjct:  504 QVYRGSWRGTPVAIKVLIQPAQVRARGAAINGEFECAYVCVERLRCEEMDDALVADFAAEVAMLAALRHPNICLFMGACLRPPRRAIVTELVARGSLWDALR-DRAPPRVPHGCAGAG-----------------VATPPEAWPWQAILRVAEGAACGMNYLHRASP-PVLHRDLKSANLLLDDSLAVKICDFGLARLKAFTTS---MTGNCGTTQWTAPEVLASQHYGEAADVYSFGVVMWELLTRVCPYEGMSQIQV 740
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A7S2SJ46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ46_9STRA)

HSP 1 Score: 249 bits (637), Expect = 7.060e-78
Identity = 134/256 (52.34%), Postives = 165/256 (64.45%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVL-------VPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRRRRGGDGRPDESSSTFLTP--QDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTS------------ATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQV 705
            +V+R  WRGT VAVK+L        P   +   +L    DFRAEV ML+ LRHPN+CLFMGA ++PP  AIVTEL+ RGSLW+ LR        A  A+            P  S++    P  Q+ W W  ++++A+GI  GM YLH H P P+LHRDLKS+NLL DE FN+KICDFGLARLK   + +            ATMTGNCGTVQWMAPEVL SERY+E ADVYSF ++ WELL+R CPYDGM+Q+QV
Sbjct:  140 KVFRATWRGTAVAVKILRYPPPGGTPAQGKDDPLL---RDFRAEVSMLSRLRHPNICLFMGASLLPPTLAIVTELVERGSLWDVLREQWRQGMDAQGAAL----------PPSSSTTPHQQPWAQNPWTWGKILRIAQGIVQGMTYLHGHRPEPVLHRDLKSSNLLCDEGFNIKICDFGLARLKKAANATGTQAHYSTRLQQATMTGNCGTVQWMAPEVLRSERYSETADVYSFGVILWELLARNCPYDGMNQVQV 382
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: B8BQF7_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQF7_THAPS)

HSP 1 Score: 241 bits (615), Expect = 1.310e-76
Identity = 122/234 (52.14%), Postives = 152/234 (64.96%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRRRRGGDGRPDESSSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QV++  W+GTPVAVKVL  +AQ       +  +F AE+ +++  RHPN+CLFMGAC+ PPNRAIVTEL   GSLW+ALR                              +  + P   WPW +V +VA G A GM YLH  EP P+LHRDLKSAN+LLDE +  K+ DFGL+RLKA  S    MTGNCGTVQWMAPEVL +E YAEPADV+SF I+ WE+L++ CPY+GM+ IQ
Sbjct:   19 QVWKAKWKGTPVAVKVLTGLAQAEAVPKAVLEEFIAEINIVSGFRHPNICLFMGACLDPPNRAIVTELCENGSLWDALR------------------------------TPLIAPAGTWPWVLVKRVASGTARGMCYLHSGEP-PVLHRDLKSANILLDESYTAKLADFGLSRLKAVRSG---MTGNCGTVQWMAPEVLCNEDYAEPADVFSFGIILWEMLTKECPYEGMTPIQ 218
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A1Z5JP08_FISSO (Sterile alpha motif and leucine zipper containing kinase AZK n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP08_FISSO)

HSP 1 Score: 244 bits (623), Expect = 6.790e-72
Identity = 130/246 (52.85%), Postives = 165/246 (67.07%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRR------------RRGGDGRPDESSSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QV++  WRGTPVAVK+L   AQ +     +  +F AE+ +L  ++HPN+CL+MGAC+VPPNRAIVTEL   GSLW+ALR   +P +   +A  G               R G        +   + P+  WPW +V KVA G+A GM YLH  +P PILHRDLKSAN+LLDE +N K+CDFGL+RLKA      +MTGNCGTVQWMAPEVLA++ Y E ADV+SF I+CWELL+R CPY+GM+ IQ
Sbjct:  576 QVWKAKWRGTPVAVKILTGSAQSKHVPRAVLEEFAAEINLLKGMQHPNICLYMGACVVPPNRAIVTELAAHGSLWDALR---LPLDSPFTACDGVSHNGWPTSLFEPDPRHGTPPSHRYPNQPPVPPKYQWPWVLVKKVAVGVARGMAYLHGGDP-PILHRDLKSANILLDESYNPKVCDFGLSRLKA---QERSMTGNCGTVQWMAPEVLANQSYNEKADVFSFGIICWELLTRQCPYEGMTAIQ 814
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A7S0UFT7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFT7_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.030e-71
Identity = 129/250 (51.60%), Postives = 161/250 (64.40%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAGSRRR--------RGGDGRPDESSSTFLT--------PQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QV++  WRGTPVAVKVL   AQ       +  +F+AE+ +L  +RHPN+CL+MGAC+ PPNRAI+TEL   GS W++LR   +P      A+ G+ R          G  G P  S    L+        P+  WPW +V +V+ G A GM YLH   P P+LHRDLKSANLLLDE +  K+CDFGL+RLKA    + +MT NCGTVQWMAPEVLA+  Y E ADVYSF I+ WELLSR CPY+GM+ IQ
Sbjct:  392 QVWKATWRGTPVAVKVLTGSAQNSHIAKPILEEFKAEINLLKGMRHPNICLYMGACLTPPNRAIITELAANGSAWDSLR---LPLSPPYRAADGTPRGCWPLRLYLPGQHGVPPSSDGGSLSSGITAPIPPRGTWPWELVKRVSCGAARGMAYLHSGNP-PVLHRDLKSANLLLDESYTTKVCDFGLSRLKA---QARSMTANCGTVQWMAPEVLANRSYDEKADVYSFGIIVWELLSRECPYEGMTPIQ 634
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A7S4K387_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K387_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.350e-71
Identity = 129/247 (52.23%), Postives = 165/247 (66.80%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSA-----------SAGSRRRRGGDGRPDESSSTFLT--PQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QV++ +WRGTPVAVK+L   AQ       +  +F +E+ M++ +RHPN+CL+MGAC+ PPNRAIVTE    GSLW+ALR+   P   A+              +GS   R   G  D +S+T L+  P   WPW +V +VA G   GM YLH   P P+LHRDLKSANLLLD+ +  K+ DFGL+R+KA      +MTGNCGTVQWMAPE+LA++ YAEPADVYSF I+ WELLSR CP++GMS IQ
Sbjct:  842 QVWKAMWRGTPVAVKILSSSAQTENVTKSVLEEFASEINMVSGMRHPNICLYMGACLDPPNRAIVTEFAAHGSLWDALRSPLDPPFTAADGISRNAWPLGLYESGSENTRS-QGWYDATSATNLSLAPAGAWPWVLVKRVASGACRGMTYLHSGRP-PVLHRDLKSANLLLDDSYTTKVADFGLSRIKA---QERSMTGNCGTVQWMAPEILANQGYAEPADVYSFGIILWELLSRECPFEGMSPIQ 1083
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A448ZCV3_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCV3_9STRA)

HSP 1 Score: 244 bits (622), Expect = 8.400e-71
Identity = 130/249 (52.21%), Postives = 161/249 (64.66%), Query Frame = 1 
Query:    1 QVYRGVWRGTPVAVKVLVPVAQRRVRVL*LAADFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELASSASAG-----SRRRRGGDGRPDESSSTFLT----------PQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            QV++  WRGTPVAVKVL   AQ       +  +F+AE+ +L  +RHPN+CL+MGACM PPNRAI+TEL   GS+W++LR   +P   AS  +       S       G P  SS + L           P+  WPW +V +V+ G A GM YLH   P P+LHRDLKSANLLLDE +  K+CDFGL+RLKA    + +MT NCGTVQWMAPEVLA+  Y E ADVYSF I+ WELLSR CPY+GM+ IQ
Sbjct:  832 QVWKATWRGTPVAVKVLTGSAQNTHIAKAILEEFKAEINLLKGMRHPNICLYMGACMTPPNRAIITELAANGSVWDSLRLPLMPPYTASDGTPNGSWPLSLYLPSHHGVPPTSSGSVLRATTEISAPIPPRGTWPWELVKRVSCGAARGMAYLHSGHP-PVLHRDLKSANLLLDESYTTKVCDFGLSRLKA---QARSMTANCGTVQWMAPEVLANRSYDERADVYSFGIIVWELLSRECPYEGMTAIQ 1076
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BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Match: A0A7S1DAG8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAG8_CYCTE)

HSP 1 Score: 225 bits (573), Expect = 1.490e-70
Identity = 114/204 (55.88%), Postives = 146/204 (71.57%), Query Frame = 1 
Query:   97 DFRAEVLMLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRAD-RVP-AELASSASAGSRRRRGGDGRPDESSSTFLTPQDCWPWSVVVKVAEGIACGMWYLHQHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCGTVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQ 702
            +F AE+ ML  +RHPN+CL+MGAC+ PPNRAIVTEL   GSLW+ALR   + P AEL  S        +G       + +T + P+  WPW++V +VA G A GM +LH   P P+LHRDLKSANLLLDE +  K+CDFGL+RLKA      +MTGNCGTVQWMAPE+LA++ YAEPADV+SF ++ WELL++ CPY+GM+ IQ
Sbjct:    1 EFAAEINMLKGMRHPNICLYMGACVDPPNRAIVTELAANGSLWDALRLPLKQPYAELDGSTPWPKELYKGAGA----TRTTHVPPKGTWPWTLVKRVACGAARGMTHLHSGRP-PVLHRDLKSANLLLDESYTAKVCDFGLSRLKA---QERSMTGNCGTVQWMAPEILANQPYAEPADVFSFGVILWELLTKECPYEGMTAIQ 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1940.5750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY8_ECTSI2.200e-12081.28Putative tyrosine kinase-like protein n=1 Tax=Ecto... [more]
A0A6H5KM77_9PHAE1.870e-11881.36Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZK37_9STRA3.330e-8558.30Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2SJ46_9STRA7.060e-7852.34Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
B8BQF7_THAPS1.310e-7652.14Protein kinase domain-containing protein (Fragment... [more]
A0A1Z5JP08_FISSO6.790e-7252.85Sterile alpha motif and leucine zipper containing ... [more]
A0A7S0UFT7_9STRA2.030e-7151.60Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S4K387_9STRA3.350e-7152.23Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A448ZCV3_9STRA8.400e-7152.21Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S1DAG8_CYCTE1.490e-7055.88Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1940contigL-elsbetiae_contig1940:1032..6610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue1.4e-88
Seed eggNOG ortholog2880.D7FTY8
Preferred namepats1
KEGG koko:K08844,ko:K17535
KEGG Pathwayko05012,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0015629,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022402,GO:0023052,GO:0030587,GO:0031156,GO:0032502,GO:0035556,GO:0036211,GO:0042578,GO:0042641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045595,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0061640,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0140096,GO:1901261,GO:1901564,GO:1903047,GO:2000241
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionputative tyrosine kinase-like protein
Ec32 orthologEc-07_002880.1
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147
Exons5
Model size711
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1940.5750.1prot_L-elsbetiae_contig1940.5750.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1940 1648..6610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.7606068-UTR-L-elsbetiae_contig1940:1031..11161622815804.7606068-UTR-L-elsbetiae_contig1940:1031..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 1032..1116 +
1691683113.7640917-UTR-L-elsbetiae_contig1940:1031..11161691683113.7640917-UTR-L-elsbetiae_contig1940:1031..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 1032..1116 +
1622815804.7721214-UTR-L-elsbetiae_contig1940:1615..16471622815804.7721214-UTR-L-elsbetiae_contig1940:1615..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 1616..1647 +
1691683113.77549-UTR-L-elsbetiae_contig1940:1615..16471691683113.77549-UTR-L-elsbetiae_contig1940:1615..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 1616..1647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.787539-CDS-L-elsbetiae_contig1940:1647..17851622815804.787539-CDS-L-elsbetiae_contig1940:1647..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 1648..1785 +
1691683113.7841697-CDS-L-elsbetiae_contig1940:1647..17851691683113.7841697-CDS-L-elsbetiae_contig1940:1647..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 1648..1785 +
1622815804.8098738-CDS-L-elsbetiae_contig1940:3968..40911622815804.8098738-CDS-L-elsbetiae_contig1940:3968..4091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 3969..4091 +
1691683113.7952998-CDS-L-elsbetiae_contig1940:3968..40911691683113.7952998-CDS-L-elsbetiae_contig1940:3968..4091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 3969..4091 +
1622815804.8308134-CDS-L-elsbetiae_contig1940:5666..58061622815804.8308134-CDS-L-elsbetiae_contig1940:5666..5806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 5667..5806 +
1691683113.8085976-CDS-L-elsbetiae_contig1940:5666..58061691683113.8085976-CDS-L-elsbetiae_contig1940:5666..5806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 5667..5806 +
1622815804.8432868-CDS-L-elsbetiae_contig1940:6417..66101622815804.8432868-CDS-L-elsbetiae_contig1940:6417..6610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 6418..6610 +
1691683113.8177068-CDS-L-elsbetiae_contig1940:6417..66101691683113.8177068-CDS-L-elsbetiae_contig1940:6417..6610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 6418..6610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1940.5750.1

>prot_L-elsbetiae_contig1940.5750.1 ID=prot_L-elsbetiae_contig1940.5750.1|Name=mRNA_L-elsbetiae_contig1940.5750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MLAALRHPNVCLFMGACMVPPNRAIVTELLTRGSLWEALRADRVPAELAS
SASAGSRRRRGGDGRPDESSSTFLTPQDCWPWSVVVKVAEGIACGMWYLH
QHEPFPILHRDLKSANLLLDECFNVKICDFGLARLKAFTSTSATMTGNCG
TVQWMAPEVLASERYAEPADVYSFAIVCWELLSRACPYDGMSQIQVL*
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mRNA from alignment at L-elsbetiae_contig1940:1032..6610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1940.5750.1 ID=mRNA_L-elsbetiae_contig1940.5750.1|Name=mRNA_L-elsbetiae_contig1940.5750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5579bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:1032..6610+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTACCGGGGCGTTTGGAGAGGCACCCCGGTGGCCGTCAAGGTCCT
CGTCCCCGTCGCTCAAAGGCGAGTGCGGGTTTTATGTAGCCGATAACGGC
GGTGGTCGTGTGACGGTGTGAAACAGGGATTTTTCCAGCGTATATACATA
TGTACATATATGCACACACTACTGAAAACAGAACAAGACGCGTGGCCTGT
TTTTTTTTTGCTCTTCTTTTTTTTTCCTCCCGTTATATTTGGCATATTTG
TCGTCTGCCCCACTGGCCCCCTTCCTCCACCAAAACTAGCTGGACGACCC
AACCGGGATCACACAGGAGGGGGGGGTCGGACCCCCTCCTGCGGTGCGTG
GGGGTCTGACACAACATTGGGGATCTGAAACGAAAACGCTTTATGTTGTT
TGTTTCTCACATTAGCTCTCTCTATACGTAGTCCAAAAACATCCATGGGG
CCCCGTGTTTACAAAAAATAGGGCACACGTCGACGCCGCGGAAGAGTAAC
AATCTGAAACGTGTGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG
TGTGTGTTGTGCCTCTGCAGGGACTTGGACGAAGAGCTGGCGGCAGACTT
TCGCGCGGAGGTCCTCATGCTGGCGGCGCTCCGACATCCCAACGTGTGCC
TCTTCATGGGGGCGTGCATGGTACCCCCCAACCGGGCGATCGTGACGGAG
CTCCTCACCAGGGGGTCTCTCTGGGAGGCTCTGAGGGCGGACAGAGTCCC
TGCGGTGAGAGGAGAGAGAGAAAGAGAGAGAGAAGAGAGAAAGAGAGAGC
AGAGAGCGGAGCAGCCGGGAAAGAAAAAAAATGCATACGTACGTATGTAT
GTACAGTATGTCACGGGGGCCCCATGCGCAGCGCACCCCCTGCTGTGACG
TAATATCAATGATCATACATACCACCGTGCATACTATTCTTTACCACCCA
AATGCGTTTCCTAAAAATAAACAATGAATCAAAGATTTTCTCCTCACACA
TCTATCTATCTCCCCAGCGGACCAGTATCCTCACCCCAAGTAAACGCCGC
AAAACAGAGGCTGAGGAGCCGAGACCCCCATGCATGAGCCCGGGCCCACG
CGTAGGTACATAAATACGTACATTAAACATATACGAGCTCGAGGTCCGCC
CCCCCCCCCCGTGCAGCCCACGCCCCGCAAGCAACGGATGTATGTGTGTG
TGTTGGTAGTATTTAGAAGCTCTTCTTTGGTGTTTGTGTTTTTAGTGTTT
TGTCTTTCTTGGGGTCGACGACACACCACGGGAACGGGGGGATATAAATC
CATCGCTCGGGCTGTGACATGCATGATTGCAGCCGCCGCAACAACAGACA
GCAGTAGTGGCATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTCAGCCGC
GTGGCCGTCTCGTCTCTCGCCCGTTGGCGGAGTTATGCGGCAGCTGTTCG
AACCACACCCCACGCCACGCCGCGCCGCGCAAGACGTATGTCCATACATA
TATATATTTTTTTTAAACCACCGTAAATACCTGATAAATACCTTGCATGT
GTGTGTGTATGTATATAGCTGAAAAGCTTCAGCGGCAGCGGCGACTCCTG
CCCCAGGGCGATTTTCTTGTCTGCCTTGTCGCCTTCAACTTCTGGTGGTG
TCTTAGTGTCTTAGTCATGAAGCACGAAGGGAAGCACACATCACGCCGAG
CCAGTCATGGTGTGTCGTACATACTCCTATGCTTCTTCTTTTTTTCCGGG
GGCATTAGTGAGGGGCAAGGAGGGAAAAGCTATAGGCCTTTTGTCGCGCT
GAGGGAGCCCTTTTTTCTTGCCTCACTGCCCTGTGACGACGCGGCAGGCC
GCACGCGCTGTCGGTGGAAGAAGGGCGCTGTCGAGGATACAAAAAATCTT
GTGCGAGTATATCTTGGACCGGAAAAAGGGAGGGTTAGTATATGCCTATC
CTACAGCAGTCCCTGTGGAACTACTTTTTTTTCACAGACTGGACGTGGAC
TGCTGGCATTTGTAGGATATGCATTAATTAAAAAATCTATGTTCACCTCC
TCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAATGCACTGCAAA
GTGTATAGTACCTCTGAAGTACACCGCAAGGTGTAGTACACGTCTCCACT
TGGGGGGACTGTCGCCGAAATTAATGGGAAGGACACACACACACACACAC
ACACACACACACACAGGCGAGGGGTGTGTTGTTGTTGTTTTTTCTTCACA
TTAGCTCGTATAATCGAGATTGCTAATGCCAAAAAATCTAGCAACTCACG
GCCCGTGGTCACATAAGTGCTAGAGCCATCAGAAGATCCGAAAAAGGACA
TACGCAGATCCACCGGGCAAAGGGACACAAAGCCGAGGAGGTACACCTAT
GAATATGCCGGTAAAAAACATTTATCCTACTGAACCACGCATCCACGAAT
CTCCATTCGACTACAGAACTACATTCCCCCCCCGTCCACGATTAACCAAT
GCACGGTTGTTTGCCGGCTACAGCCAATGACTGTCTGGAGTGCTGCCTGT
ACAAAAACGCACGGGTCGCGTGGTGGATATGGGAGAGGAACGCGATTGCT
CTGTCAGAGTGACAATCCGCCGATACGCGGTGAAAAAGAACCAAGCCAAC
CGAAAGCCACCAAGCAATCCACAACAGTTACCAAGAGTATCCAATCATCC
GTGGTACATAAGTACAGTACGAACAACGACACCGATCCGTTTCGTTCCAC
ATTGAGTGGTTCTTCCAGGAGTGTGTGTGTGTGTGATGGTTGATTTTTTT
TCATTTTTTTTCACATAAATTTATGCACTTACGTATATACCGACCTCCCT
GCTTGTTCGTTCCTGCCGCCGTCTTGTCTCAAATCGCTTTCGCGCGTTTG
CCGTGTCCCCCGACGCAATAAAAAAAAAAAAAAACAGGAGTTGGCGTCAT
CGGCATCGGCAGGGTCGCGCCGGAGAAGGGGCGGCGACGGACGCCCCGAT
GAATCCTCCTCGACGTTTCTCACCCCGCAGGATTGCTGGCCGTGGTCGGT
TGTCGTCAAGGTTCGTGCGGTTGGTTTTTTACTTTTACGTACCACGTCCC
GTCGTATTCCGTGTGGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTG
GCGACAGTCCCCCCAAGTGGAGACCACCTTGCGGTGTACTTGGAGGTTTT
ATACACTTTGCAGTGCATTTGTACCGGGGTCACACACAGGAGGGGGTGAA
CACTGGGGCTTTTTCCTTCCTTTTAAAATAAAACAAAGAATCAAAGATGG
AACCTAACCCATACTAGAGCAAACACTCGATATGGGGTTCAAACGGTATT
CCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAAAACTAAATAT
TAGAAGAATTCAACATCTATCTCCCCTGCAAAGATTTAGATTTGCGAGGT
CGGCCAACAATTTTCCAGCGGGTTTTGTGCAAGACACCAACCATTTTCCC
TTTGGGGGTGCGCTCTTCTTGCGCGCGCGCCCACGGCGTGTGTATGTATG
CATGCATCTTCGCTGCGTTTTATGTCTCGCCAGCAGCGCCTCGGCGCCCT
CGTGTGGGATCTGTCTGTCTGCTCCGTTGCCCCACACTTGAAGAGTATGC
GGGTATGTTGGTGCCCAGCCCGCAACAAGCAAACAGCATCCAAACCAAGC
ATGCGATGCGTTTCTCTGCCCGTCTTTTTTTTCTCTTCTTTTTTTTAAAT
AAACAAAGAATCAAAGATGGAACCTAACCCACACTAGAGCAAAGACTCGA
TATGGGGTTCAAACGGTATTCCCTACATACAGAGACGTAATATTTGGCGA
AGCGAGCAGAAAAACAAACCTAAAAACAAACCTAAGTATCAGAAGAGTTC
AACATCTCCCCTGCAAAGATTTGAGATTTGCGAGGTCGGCCAACATTTTT
TTTTCCGGTACATATGTATGAAAGCGCGTCGGTTTTTTTTTTATATTATT
TGCTGGTTATTTTTTTAAGTATATATTTGCTGATTAATTTATGGTTCTGA
TTGTGTTTAAATAGCAGAAGCCCGCCCGACCGCCTGTTTTTCCTCCTCTT
TTTTTTGCTTCCAATTGAAAACGTTTTTTTATGGCCGCTTGAAAAGGATG
TACGTATGTATGTATGTATGTATGTATGTATGTATGTATGTGTGTACCGT
ATATGCCACAAGATAACGCACCCCCTGGGCCGATTTTCAAAGCTCGGTAA
CTCCGCAACGAGTGTGAGTCTTATTTAGTACTACCAAACGGCGCGTTTTG
GGACAGCTCTTGATGAGACCTTTCCAACGCCACCCTTTTCGGGACTGACA
GCTCCTCTCGCTGTGGAGTACATACGTCCTTGAGCTTTGAAAATCGGTCC
AGGGGGTGTGTTATCTTGCGTCGGAACGGTACGTAGGTACCCCGCCCGCC
CGCGCGTGACGGACGGTTTGATTTGCTTTGCTTCGCTTTGCTTTGCGTTG
CTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTGTGCGACAACGC
GCACGACACGTTTTGGCGCTCTGCTCCTGTGACCCCCCCCCCCCCCCTCC
CCTCCCCAAACCCCCAACCCCCAACCCCCCGACAGGTGGCGGAGGGCATT
GCGTGCGGGATGTGGTACCTGCACCAGCACGAGCCCTTCCCCATCCTGCA
CAGAGACCTCAAGAGCGCGAACTTGCTGCTGGACGAGTGCTTCAACGTCA
AGATTTGCGATTTTGGCTTGGCGAGGTGCGCGCGGGAAGCGGCGGTGGTG
ATGAGAGCGGACCTACAGCAGTAGATTTGATCTTGCTTGCGGCCAAAAAT
ATTATGTAGAAGTAGATAAAGGAGTAGATATATACATATACGAAGTTACT
CATATATCTATGTATACTCAAATACTTCTACGGAGGTATACGAAGTGTAT
CTACCAACCAGGCACACGCAATCGCTACATATCCCGACGAGCGTTGATAT
ACTGCATTGCATTGCCCTCTCGTCCCCTCGTGTTTTATGTACCGCTGTTT
CGCTGCGTTGTTGCTTGTCCCGCTTTGACCTCCTCCTCTTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCCCCCT
CCTCCCCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCCTCCCACGCCTCCCGTCCCTGCACCACCCATTT
ACACCTACACTCGGCCGGTCTTGTCCGCTCGGGGCCGGCTGCGCCTTTTT
CGGCTGCGCCTTTTTCGGCTGCGCCTTTTTCGGCTGCGCCTCTTTCGGCT
TGGGCCTCGGGCCTCTCGGGGGGGGGGCGGGGGCAGGTTAAAGGCCTTCA
CCAGCACCTCGGCGACGATGACGGGGAACTGCGGGACGGTGCAGTGGATG
GCGCCGGAGGTCCTGGCCAGCGAGAGGTACGCGGAGCCGGCGGACGTGTA
CAGCTTCGCCATCGTCTGCTGGGAGCTCCTCTCGCGCGCCTGCCCGTACG
ACGGCATGAGCCAGATCCAGGTATTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1940:1032..6610+

>mRNA_L-elsbetiae_contig1940.5750.1 ID=mRNA_L-elsbetiae_contig1940.5750.1|Name=mRNA_L-elsbetiae_contig1940.5750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:1032..6610+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCGGCGCTCCGACATCCCAACGTGTGCCTCTTCATGGGGGCGTG
CATGGTACCCCCCAACCGGGCGATCGTGACGGAGCTCCTCACCAGGGGGT
CTCTCTGGGAGGCTCTGAGGGCGGACAGAGTCCCTGCGATGCTGGCGGCG
CTCCGACATCCCAACGTGTGCCTCTTCATGGGGGCGTGCATGGTACCCCC
CAACCGGGCGATCGTGACGGAGCTCCTCACCAGGGGGTCTCTCTGGGAGG
CTCTGAGGGCGGACAGAGTCCCTGCGGAGTTGGCGTCATCGGCATCGGCA
GGGTCGCGCCGGAGAAGGGGCGGCGACGGACGCCCCGATGAATCCTCCTC
GACGTTTCTCACCCCGCAGGATTGCTGGCCGTGGTCGGTTGTCGTCAAGG
AGTTGGCGTCATCGGCATCGGCAGGGTCGCGCCGGAGAAGGGGCGGCGAC
GGACGCCCCGATGAATCCTCCTCGACGTTTCTCACCCCGCAGGATTGCTG
GCCGTGGTCGGTTGTCGTCAAGGTGGCGGAGGGCATTGCGTGCGGGATGT
GGTACCTGCACCAGCACGAGCCCTTCCCCATCCTGCACAGAGACCTCAAG
AGCGCGAACTTGCTGCTGGACGAGTGCTTCAACGTCAAGATTTGCGATTT
TGGCTTGGCGAGGTGGCGGAGGGCATTGCGTGCGGGATGTGGTACCTGCA
CCAGCACGAGCCCTTCCCCATCCTGCACAGAGACCTCAAGAGCGCGAACT
TGCTGCTGGACGAGTGCTTCAACGTCAAGATTTGCGATTTTGGCTTGGCG
AGGTTAAAGGCCTTCACCAGCACCTCGGCGACGATGACGGGGAACTGCGG
GACGGTGCAGTGGATGGCGCCGGAGGTCCTGGCCAGCGAGAGGTACGCGG
AGCCGGCGGACGTGTACAGCTTCGCCATCGTCTGCTGGGAGCTCCTCTCG
CGCGCCTGCCCGTACGACGGCATGAGCCAGATCCAGGTATTGTAGGTTAA
AGGCCTTCACCAGCACCTCGGCGACGATGACGGGGAACTGCGGGACGGTG
CAGTGGATGGCGCCGGAGGTCCTGGCCAGCGAGAGGTACGCGGAGCCGGC
GGACGTGTACAGCTTCGCCATCGTCTGCTGGGAGCTCCTCTCGCGCGCCT
GCCCGTACGACGGCATGAGCCAGATCCAGGTATTGTAG
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