mRNA_L-elsbetiae_contig19397.5745.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19397.5745.1
Unique NamemRNA_L-elsbetiae_contig19397.5745.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19397.5745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19397contigL-elsbetiae_contig19397:233..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19397.5745.1prot_L-elsbetiae_contig19397.5745.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19397 233..815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.8559015-CDS-L-elsbetiae_contig19397:232..4161622815803.8559015-CDS-L-elsbetiae_contig19397:232..416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19397 233..416 -
1691683113.1425483-CDS-L-elsbetiae_contig19397:232..4161691683113.1425483-CDS-L-elsbetiae_contig19397:232..416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19397 233..416 -
1622815803.8708289-CDS-L-elsbetiae_contig19397:714..8151622815803.8708289-CDS-L-elsbetiae_contig19397:714..815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19397 715..815 -
1691683113.1514502-CDS-L-elsbetiae_contig19397:714..8151691683113.1514502-CDS-L-elsbetiae_contig19397:714..815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19397 715..815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.8835855-UTR-L-elsbetiae_contig19397:815..8391622815803.8835855-UTR-L-elsbetiae_contig19397:815..839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19397 816..839 -
1691683113.1596844-UTR-L-elsbetiae_contig19397:815..8391691683113.1596844-UTR-L-elsbetiae_contig19397:815..839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19397 816..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19397.5745.1

>prot_L-elsbetiae_contig19397.5745.1 ID=prot_L-elsbetiae_contig19397.5745.1|Name=mRNA_L-elsbetiae_contig19397.5745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MFHSMAEANGAMYLLGGSNGREKLNDAWVSTDGRDWNLVTHDCQWSPRSG
HASICFENSLYVVGGEGGSGKLKDVWRSEDGAHWTRIEVGVTVSP
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mRNA from alignment at L-elsbetiae_contig19397:233..839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19397.5745.1 ID=mRNA_L-elsbetiae_contig19397.5745.1|Name=mRNA_L-elsbetiae_contig19397.5745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=607bp|location=Sequence derived from alignment at L-elsbetiae_contig19397:233..839- (Laminarionema elsbetiae ELsaHSoW15)
TCGAACGCGCCGTGGGGGGGCCGGATGTTCCACTCCATGGCGGAGGCGAA
CGGGGCCATGTACCTCTTGGGCGGCTCGAACGGCCGCGAGAAGCTGAACG
ATGCTTGGGTTTCCACCGACGGAAGGTATATCAATAAACATGTACTGGGA
GTATAATTTATCGCATGAAAATAATACGCAAACTATCAATGCCGCATAAA
TGTTGCATGTATGTAGAAGTATGTAGATTTGGAGTTGATAGAGACGGTGG
TTTTGTTCGGGGGGGGGGGAGTGAGGAACTTTTGTTGATTTGAGAATCCG
TATTCTTGTGGTGTTGTTGTTGTCGCTTGCTGCCAAGAAAGCTCACAATT
TCCTCTTTTTTTTTGTTTTGCGCGCGCGCGTGTGTGTGTGTGGACGAATC
ATCCATCGTGCGGGTGTCGGCAGGGATTGGAATCTCGTGACCCACGACTG
TCAGTGGAGCCCCCGGAGCGGGCACGCCTCGATCTGCTTCGAGAACTCCT
TGTACGTCGTCGGGGGGGAGGGGGGCAGCGGCAAGCTCAAGGACGTGTGG
CGCTCGGAGGACGGGGCGCACTGGACAAGAATAGAGGTGGGCGTTACTGT
TTCGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19397:233..839-

>mRNA_L-elsbetiae_contig19397.5745.1 ID=mRNA_L-elsbetiae_contig19397.5745.1|Name=mRNA_L-elsbetiae_contig19397.5745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig19397:233..839- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCACTCCATGGCGGAGGCGAACGGGGCCATGTACCTCTTGGGCGG
CTCGAACGGCCGCGAGAAGCTGAACGATGCTTGGGTTTCCACCGACGGAA
GATGTTCCACTCCATGGCGGAGGCGAACGGGGCCATGTACCTCTTGGGCG
GCTCGAACGGCCGCGAGAAGCTGAACGATGCTTGGGTTTCCACCGACGGA
AGGGATTGGAATCTCGTGACCCACGACTGTCAGTGGAGCCCCCGGAGCGG
GCACGCCTCGATCTGCTTCGAGAACTCCTTGTACGTCGTCGGGGGGGAGG
GGGGCAGCGGCAAGCTCAAGGACGTGTGGCGCTCGGAGGACGGGGCGCAC
TGGACAAGAATAGAGGTGGGCGTTACTGTTTCGCCTGGATTGGAATCTCG
TGACCCACGACTGTCAGTGGAGCCCCCGGAGCGGGCACGCCTCGATCTGC
TTCGAGAACTCCTTGTACGTCGTCGGGGGGGAGGGGGGCAGCGGCAAGCT
CAAGGACGTGTGGCGCTCGGAGGACGGGGCGCACTGGACAAGAATAGAGG
TGGGCGTTACTGTTTCGCCT
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