mRNA_L-elsbetiae_contig1938.5742.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1938.5742.1
Unique NamemRNA_L-elsbetiae_contig1938.5742.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: D7FTT1_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT1_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.170e-129
Identity = 210/247 (85.02%), Postives = 228/247 (92.31%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNALGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGSTS-LLAPGNRQLSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQKVTVESEEAAAEAALTSALL 738
            MTPYMTGADVANVCATAGRIAAR+GSD+V LEHFSAAVDRV HGLEKPD+ V++ +K+RTAIHEAGHAV  WMLPWCDEVVKVSIVWRGNALGFSQTA+VERQS+MREMVLD VCMTLAGRAAEEVLC TISGGASSDLR+ASR LYSAITEVGFGST+ LL+PG+RQLSEKVM E+D+EVQTLLAQQYQRAL LIRTHRDKI+SLS  LLE NVVHKADLR+ILG KVTVE+EEAAA AALT  LL
Sbjct:  683 MTPYMTGADVANVCATAGRIAARSGSDAVELEHFSAAVDRVQHGLEKPDREVTEDEKKRTAIHEAGHAVAGWMLPWCDEVVKVSIVWRGNALGFSQTAVVERQSEMREMVLDSVCMTLAGRAAEEVLCGTISGGASSDLRMASRQLYSAITEVGFGSTTGLLSPGHRQLSEKVMGEIDQEVQTLLAQQYQRALALIRTHRDKIDSLSAALLEHNVVHKADLRRILGDKVTVETEEAAAAAALTEGLL 929
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: UPI001BBF08FE (AAA family ATPase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI001BBF08FE)

HSP 1 Score: 171 bits (434), Expect = 3.780e-48
Identity = 98/236 (41.53%), Postives = 144/236 (61.02%), Query Frame = 1 
Query:    4 TPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNA-LGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGF----GSTSLLAPGNRQLSEKVMAE-----VDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQK 681
            TP   GAD+ANVC  A  IAAR G D+V +  F  A+DRV+ GLEK +K+++  +K   A HEAGHAV  W L     ++KV+IV RG A LG++Q    E+     + ++D +CMTL GRAAEE+    IS GA++DL+  +R+ YS +T  G     G+ S   P       K  +E     +DEEV+ ++ Q YQR L L++  R ++E L+K LLE+ V+HK+D+  ++G++
Sbjct:   50 TPGFAGADIANVCNEAALIAARKGKDAVDMSDFQDAIDRVIGGLEKKNKIIAPHEKSIIAYHEAGHAVCGWFLEHAYPLLKVTIVPRGTAALGYAQYTPTEQYLYNTDQLMDQICMTLGGRAAEEIFFGKISTGAANDLQQITRIAYSMVTAYGMNKKVGNVSFYDPSQENTFTKPYSEETGKIIDEEVRGIIDQAYQRTLDLLKERRTEVERLAKELLEKEVLHKSDVESLIGKR 285
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: F0ZXE1_DICPU (AAA domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZXE1_DICPU)

HSP 1 Score: 175 bits (444), Expect = 1.140e-47
Identity = 103/243 (42.39%), Postives = 150/243 (61.73%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRG-NALGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGF----GSTSLLAPGNRQL----SEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQKVTVESEE 702
            +TP  +GAD+ANVC  A  IAAR  +D + LEHF AA+DR++ GLEK +K++S  +K+  A HEAGHAV +W L  C  ++KVSIV RG  ALG++Q    E+  Q +E + D +CM L GR AE++   TI+ GA  DL+  ++M YS I+  G     G  S     N  L    SE+    VDEEV+ LL   Y R   L+  H+D +ES++K+LLE+ V+H  ++  +LG++   +++E
Sbjct:  248 LTPGFSGADIANVCNEAALIAARRNADLITLEHFDAAIDRIIGGLEKKNKVLSPQEKKTVAYHEAGHAVVSWFLKHCHPLLKVSIVPRGVAALGYAQYLPKEQFLQNKEQIFDMMCMALGGRVAEQLTFGTITTGAQDDLQKITKMAYSQISIYGMNEKVGPLSFPRRDNSDLTRPYSEETAELVDEEVRKLLKAAYDRTKELLIEHKDGLESVAKLLLEKEVIHYEEVENVLGKRPFEKTKE 490
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A7X8XXF8_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Flammeovirga agarivorans TaxID=2726742 RepID=A0A7X8XXF8_9BACT)

HSP 1 Score: 177 bits (450), Expect = 1.770e-47
Identity = 104/236 (44.07%), Postives = 149/236 (63.14%), Query Frame = 1 
Query:    4 TPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRG-NALGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGF----GSTSLLAPG-----NRQLSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQK 681
            TP   GA++ANVC  A  IAAR    +V ++ F AA+DRV+ GLEK +K++SK +K   A HEAGHAVT W L   + +VKVSIV RG  ALG++Q    E+     E ++D +CMTL GRAAEE++   IS GA SDL   ++M YS ++  G     G  S   P      +R  SE +  ++DEEV+ L+   Y+R L L+R H D +ESL++ LLE+ V++++DL K++G++
Sbjct:  396 TPGFAGAELANVCNEAALIAARNNKPAVEMDDFMAAIDRVIGGLEKKNKIISKEEKRIVAYHEAGHAVTGWFLEHANPLVKVSIVPRGVAALGYAQYLPKEQYLNTTEEMMDEICMTLGGRAAEEIIFGRISTGALSDLERTTKMAYSMVSIYGMNDKIGHLSFYDPNRSEFSSRPYSEALAEKIDEEVKNLIDAMYKRTLALLRDHSDALESLAQQLLEKEVLYQSDLVKLIGER 631
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A6P5H315_ANACO (ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isoform X1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H315_ANACO)

HSP 1 Score: 177 bits (449), Expect = 2.250e-47
Identity = 99/236 (41.95%), Postives = 143/236 (60.59%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNA-LGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGS-TSLLAPGNRQ-------LSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQK 681
            +TP   GAD+AN+C  A  IAAR+   SV + HF AA+DRV+ GLEK +K++SK ++   A HE+GHAV  W L   D ++KV+I+ RG A LGF+Q    E      E + D  CMTL GRAAEE+L   IS GA  DL   ++M YS +   GF +   LL+   R+        S K  A +D EV+  + + Y+R + L+  H+D I  ++++LLE+ V+H+ DL +ILG++
Sbjct:  415 LTPGFAGADIANMCNEAALIAARSDETSVTMRHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVVGWFLEHADPLLKVTIIPRGTAALGFAQYVPNENLLLTEEQLFDRTCMTLGGRAAEEILLGKISTGAQDDLEKVTKMAYSQVAVYGFSNKVGLLSFPQREDYEPTKPYSNKTAALIDSEVRIFVGRAYERTIQLVEEHKDHIAQVAELLLEKEVIHQEDLLRILGER 650
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A1B1FVG0_9BACT (ATP-dependent zinc metalloprotease FtsH n=3 Tax=Flammeovirga TaxID=59739 RepID=A0A1B1FVG0_9BACT)

HSP 1 Score: 177 bits (449), Expect = 2.350e-47
Identity = 111/257 (43.19%), Postives = 155/257 (60.31%), Query Frame = 1 
Query:    4 TPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRG-NALGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGF----GSTSLLAPG-----NRQLSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILG----------QKVTVESEEAAAE 714
            TP   GA++ANVC  A  IAAR    +V ++ F AA+DRV+ GLEK +K++SK +K   A HEAGHAVT W L   + +VKVSIV RG  ALG++Q    E+     E ++D +CMTL GRAAEE++   IS GA SDL   ++M YS ++  G     G  S   P      +R  SE +  ++DEEV+ L+   YQR L L+R H D +E L++ LLE+ V++++DL K++G          Q+ T E+EE  AE
Sbjct:  398 TPGFAGAELANVCNEAALIAARNNKSAVEMDDFMAAIDRVIGGLEKKNKIISKEEKRIVAYHEAGHAVTGWFLEHANPLVKVSIVPRGVAALGYAQYLPKEQYLNTTEEMMDEICMTLGGRAAEEIIFGRISTGALSDLERTTKMAYSMVSIYGMNNEIGHLSFYDPNRSEFSSRPYSEALAEKIDEEVKKLIEGAYQRTLDLLREHGDALEKLAQQLLEKEVLYQSDLVKLIGERPFDKKTIYQEFTEEAEEKKAE 654
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A427APB8_ENSVE (AAA domain-containing protein n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A427APB8_ENSVE)

HSP 1 Score: 175 bits (443), Expect = 2.520e-47
Identity = 99/237 (41.77%), Postives = 146/237 (61.60%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNA-LGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGS-TSLLAPGNRQ--------LSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQK 681
            +TP   GAD+ANVC  A  IAAR+    V ++HF AA+DR++ GLEK +K+VSK ++   A HEAGHAVT W L   + ++KV+IV RG A LGF+Q    E     +E + D  CMTL GRA+EEVL   IS GA +DL   ++M Y+ +   GF     LL+   R+         S K  A +D EV+  +++ Y+R + LI+ H D +  ++++LLE+ V+H+ DL ++LG++
Sbjct:  255 LTPGFAGADIANVCNEAALIAARSEETQVTMQHFEAAIDRIIGGLEKKNKVVSKLERRTVAYHEAGHAVTGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRASEEVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDGFEMMKPYSNKTGAIIDAEVREWISKAYERTVELIKEHTDHVAQIAELLLEKEVLHQDDLAQVLGER 491
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A5B6ZUD1_DAVIN (Putative FTSH protease 10 n=5 Tax=Pentapetalae TaxID=1437201 RepID=A0A5B6ZUD1_DAVIN)

HSP 1 Score: 172 bits (437), Expect = 5.840e-47
Identity = 100/243 (41.15%), Postives = 147/243 (60.49%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNA-LGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGS-TSLLAPGNRQ--------LSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQKVTVESE 699
            +TP   GAD+ANVC  A  IAAR     V++EHF AA+DRV+ GLEK +K++SK ++   A HE+GHAV  W L   + ++KV+IV RG A LGF+Q    E     +E + D  CMTL GRAAE+VL   IS GA +DL   ++M Y+ +   GF     LL+   R          S K  A +D EV+  +A+ Y+R + LI  H++++  ++++LLE+ V+H+ DL ++LG++    SE
Sbjct:  191 LTPGFAGADIANVCNEAALIAARNEGTQVMMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDAFEMTKPYSSKTGAIIDSEVREWVAKAYERTVQLIEEHKEQVAQIAELLLEKEVLHQDDLVRVLGERPFQSSE 433
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A1U8EGM1_CAPAN (ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isoform X1 n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8EGM1_CAPAN)

HSP 1 Score: 176 bits (445), Expect = 7.600e-47
Identity = 98/239 (41.00%), Postives = 145/239 (60.67%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNALGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGSTSLLAP-----GNRQL-SEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQKVTVESE 699
            +TP   GAD+ANVC  A  +AAR  S  + +EHF AA DRV+ GLEK +K++SK ++   A HE GHAV  W L   + ++KV+I+ RG ALGF+Q    E+  +++E + D  CMTL GRAAE+VL   IS GA  DL+  + M Y+ +   GF     L       G  +L S +  A +D EV+ L+A+ Y   + LI  HR+ +  ++++LLE+ V+H+ DL ++LG++    SE
Sbjct:  391 LTPGFVGADIANVCNEAALLAARRESTIINMEHFEAATDRVIGGLEKKNKVISKLERRTIAYHEPGHAVAGWFLEHAEPLLKVAIIPRGTALGFAQYVNSEKHVKIKEQLFDITCMTLGGRAAEQVLIGKISTGAHDDLKKVTNMTYAQVAVYGFSEEVGLVSFPQTDGTSKLYSNETAALIDNEVRKLVAKAYDHTVQLIEQHREHVAQIAELLLEKEVLHQEDLVQVLGERPFTSSE 629
[Close]
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Match: A0A4S8IV66_MUSBA (AAA domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IV66_MUSBA)

HSP 1 Score: 176 bits (447), Expect = 1.100e-46
Identity = 100/243 (41.15%), Postives = 150/243 (61.73%), Query Frame = 1 
Query:    1 MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDKLVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNA-LGFSQTAMVERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAITEVGFGS-TSLLAPGNRQ--------LSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRDKIESLSKVLLERNVVHKADLRKILGQKVTVESE 699
            +TP   GAD+ANVC  A  IAAR     V ++HF AA+DR++ GLEK +K++SK ++   A HE+GHAV  W L   + ++KV+IV RG A LGF+Q    E     +E + D  CMTL GRA+EEVL   IS GA +DL   ++M Y+ +   GF +   LL+   R          S K  A +DEEV+  +++ Y+R + LI+ H+D++  ++++LLE+ V+H+ DL ++LG++  V SE
Sbjct:  509 LTPGFAGADIANVCNEAALIAARNEGTQVTMQHFEAAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPSENLLLTKEQLFDMTCMTLGGRASEEVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSNKVGLLSFPQRDDTPEMTKPYSSKTGAIIDEEVREWVSKAYERTVALIKEHKDQVIQIAELLLEKEVLHQQDLVRVLGERPFVSSE 751
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1938.5742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTT1_ECTSI1.170e-12985.02AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI001BBF08FE3.780e-4841.53AAA family ATPase n=1 Tax=Chitinophagaceae bacteri... [more]
F0ZXE1_DICPU1.140e-4742.39AAA domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A7X8XXF8_9BACT1.770e-4744.07ATP-dependent zinc metalloprotease FtsH n=1 Tax=Fl... [more]
A0A6P5H315_ANACO2.250e-4741.95ATP-dependent zinc metalloprotease FTSH 8, mitocho... [more]
A0A1B1FVG0_9BACT2.350e-4743.19ATP-dependent zinc metalloprotease FtsH n=3 Tax=Fl... [more]
A0A427APB8_ENSVE2.520e-4741.77AAA domain-containing protein n=3 Tax=Petrosaviida... [more]
A0A5B6ZUD1_DAVIN5.840e-4741.15Putative FTSH protease 10 n=5 Tax=Pentapetalae Tax... [more]
A0A1U8EGM1_CAPAN7.600e-4741.00ATP-dependent zinc metalloprotease FTSH 8, mitocho... [more]
A0A4S8IV66_MUSBA1.100e-4641.15AAA domain-containing protein n=3 Tax=Musa TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1938contigL-elsbetiae_contig1938:9373..15772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.6
Seed ortholog evalue1.9e-110
Seed eggNOG ortholog2880.D7FTT1
KEGG koko:K03798,ko:K08956,ko:K09552
KEGG ModuleM00742
Hectar predicted targeting categoryother localisation
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Exons6
Model size852
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1938.5742.1prot_L-elsbetiae_contig1938.5742.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1938 9373..15772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.4516733-CDS-L-elsbetiae_contig1938:9372..95431622815803.4516733-CDS-L-elsbetiae_contig1938:9372..9543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 9373..9543 -
1691683112.860804-CDS-L-elsbetiae_contig1938:9372..95431691683112.860804-CDS-L-elsbetiae_contig1938:9372..9543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 9373..9543 -
1622815803.466002-CDS-L-elsbetiae_contig1938:11049..111871622815803.466002-CDS-L-elsbetiae_contig1938:11049..11187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 11050..11187 -
1691683112.873864-CDS-L-elsbetiae_contig1938:11049..111871691683112.873864-CDS-L-elsbetiae_contig1938:11049..11187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 11050..11187 -
1622815803.4781356-CDS-L-elsbetiae_contig1938:11863..119511622815803.4781356-CDS-L-elsbetiae_contig1938:11863..11951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 11864..11951 -
1691683112.8847735-CDS-L-elsbetiae_contig1938:11863..119511691683112.8847735-CDS-L-elsbetiae_contig1938:11863..11951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 11864..11951 -
1622815803.4904284-CDS-L-elsbetiae_contig1938:13256..134341622815803.4904284-CDS-L-elsbetiae_contig1938:13256..13434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 13257..13434 -
1691683112.8947427-CDS-L-elsbetiae_contig1938:13256..134341691683112.8947427-CDS-L-elsbetiae_contig1938:13256..13434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 13257..13434 -
1622815803.5051181-CDS-L-elsbetiae_contig1938:14117..142441622815803.5051181-CDS-L-elsbetiae_contig1938:14117..14244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 14118..14244 -
1691683112.9053485-CDS-L-elsbetiae_contig1938:14117..142441691683112.9053485-CDS-L-elsbetiae_contig1938:14117..14244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 14118..14244 -
1622815803.5181777-CDS-L-elsbetiae_contig1938:15622..157721622815803.5181777-CDS-L-elsbetiae_contig1938:15622..15772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 15623..15772 -
1691683112.9172387-CDS-L-elsbetiae_contig1938:15622..157721691683112.9172387-CDS-L-elsbetiae_contig1938:15622..15772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1938 15623..15772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1938.5742.1

>prot_L-elsbetiae_contig1938.5742.1 ID=prot_L-elsbetiae_contig1938.5742.1|Name=mRNA_L-elsbetiae_contig1938.5742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MTPYMTGADVANVCATAGRIAARAGSDSVVLEHFSAAVDRVLHGLEKPDK
LVSKADKERTAIHEAGHAVTAWMLPWCDEVVKVSIVWRGNALGFSQTAMV
ERQSQMREMVLDGVCMTLAGRAAEEVLCSTISGGASSDLRVASRMLYSAI
TEVGFGSTSLLAPGNRQLSEKVMAEVDEEVQTLLAQQYQRALGLIRTHRD
KIESLSKVLLERNVVHKADLRKILGQKVTVESEEAAAEAALTSALLKGGS
HGAPASERGAAAAAPKEDEEAHSIRNTDAPAKV*
back to top

mRNA from alignment at L-elsbetiae_contig1938:9373..15772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1938.5742.1 ID=mRNA_L-elsbetiae_contig1938.5742.1|Name=mRNA_L-elsbetiae_contig1938.5742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6400bp|location=Sequence derived from alignment at L-elsbetiae_contig1938:9373..15772- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCCCTACATGACCGGCGCAGACGTGGCGAACGTGTGCGCGACGGC
GGGCAGGATAGCGGCGAGGGCGGGGTCGGACTCGGTAGTGCTCGAGCACT
TCAGCGCCGCGGTGGACCGGGTGTTGCACGGGCTGGAAAAGCCTGACAAG
GTCAGGGCTCGCCGCTGATGCATGTAAACGTATGCATGCATGTGTGGCCG
CGGTTCAGTACTCTGGCAAGATGTCCCCCTGACAGGGTGCCAGCCAGCCC
ATCAGGCACTACTTGTAAATAGAAATAAACGTGGAGAAGAAAAAAAGAAA
AAGAAAATGTATGTGTGTACATGAAAGGGTTCGATTTCTACTGAATAAGA
AAGGGGTCGATTTATACTTGGTGAGAAAGGGTTTCTACTGATTGACTGAC
TGACTGCTCTTTGAGTTTAAGTTAGCTTTGGGACCACGTGAGTCGGCCGC
ATCAAGTGTTGGAATAGTTGGTGTTATTTTTCACATTAGCTCTCTGTATA
TGTAGTCCAAAACATCCTTGGGGGGACCGTGGTCACAAAACAAGGTGTTG
GGATATGTAGTACTGACATTCAGTCAGTATGGAGGTACTGGGCGGAGAGA
TCGGAACATTTTTTAATGTGAAAAACAACTGGTGGTCATCTTGTGTCGGG
CGATTACTGGATATTAGGTCATTTGTGTCGCAAAACATAGTGGATTCAAA
CACGCCCAATGTAGCTGCTGTGTGTGCTTTGAAGCAGGTTTTGATGTCAA
AAATTGCCAAACAATTTACAAACTAAAATACCTCCCGGAGCAGCATTAGG
CAGTAGTAGATGCTTGCTTGGTTTTGATTTCAAGTTTTTTGTCGGGTGTT
GTTATGACGCCGGCTTCCTTTTGCTTTCCGGTGGCATTTATATATGTATT
GATGGCGATGCCCCCCCCCCCCCAGTTTGTGTTTGGCTTTTATTTTGGGG
TTGTTGGTTTTATTTTTCCTTTTCCTTATCGGTCAGGCNNNNNNNNNNTT
TTGTCGGGTGTTGTTTTGACGCCGGCTTCCTTTTGCTTTCCGGTGGCATT
TTTTTATGTTTTGATGGCGATGCCCCCCCCCCCCCCCCAGTTTGTGTTTG
GCTTTTATTTAGGTATTGTTGGTGTTATTTTCCATTTCCTTGACCAGTCA
GTCTGCCATGGCGTCATGCCTCGGAGAGCGTTTGGTTCGTTGGTGGAGAT
TAGGTTTGATACATGACATGTGTTAAGGTATCACAGGCAGGGGCACCGCA
GGAGGGGGCCCACCCCCCCCACTACCTCCTGTGTGACCCCGGTTGGGTCG
TCTATTTAGCCAGTCGTAGTGGAGCAAGGGGGCCAGTGGGGCAGACGACG
AATATGTCAATAATGGGAGCAAAAAAACAAGATCAAAACTGTTGCTGGAT
GTCTGGATGGTGTCCTTCTCTTTAGGTGTCTCTTTTTTTCCCCCTTGCCT
TTACTAACACTCTCTGGCGTGCGCGCGCGCGTTTGCTGCTTTTACTCCTC
CTGTTGCCTGTTGTCTTGGATCTTCCAGCTAGTCTCGAAAGCGGACAAAG
AGCGCACAGCGATCCACGAGGCTGGCCACGCCGTTACGGCTTGGATGCTG
CCGTGGTGTGATGAGGTCGTGAAGGTCTCCATTGTCTGGCGAGGCAATGC
CCTCGGTAAGCCCCCCCCCCCCCCCCCCCCACTTAATATATCACGAAGCC
CCCATCCCTACGGAATTTCGTTGTTGGAATGTACACGTATTTTTTACGAG
TTTTATGGGGTATTGTATGTGGTTGAAAACGCATTTAGCGGAAACCTGCG
ACGATTTTTTCTTGTTTTCATCCTCGAAAACGTCGACACAAAACTTTGGC
GCAACAGCCGCCGAAAAACGTACTAAATAGTACCCCCCCCCCAAGGATTT
ATGTTAATAACAACCCTCATTTTTCTCAAAACTGGGGTTAGTCCCCGGGA
ACGACTTTTTCGCAGACTGGACATTAATTAAACGCGTGTGTGCCTTGTTT
ATAAAGAGAAAATCAGCCATAAATCAATAACGGAATGCCACCCACATTGA
TTGAGAGAGGGGACTCCGTGGGTGGGGTTTAACCGATATGTACGTGTTCA
ATATCTTCAGGGACGTCATATTGGTCCGCCGGCGGCCGTGTAGAGAAAGC
ACCCACGTCCGAAGAGTCCAACCAGCATCTCCCCTGCAAGCAAAAAGCTC
TGCCAGATGAATTCAACGTGAACATTACTTCCTCTTCTTTCGGTCGTGTG
CCTTTGCTCCGGGGTCTGTCTTCTTCTCTGAATTCAATCTTATTTGCTCG
GGGTCTTTTCTTCTTAAATCTCTTTGTTGTTTTCGCAGGGTTCTCGCAGA
CGGCCATGGTGGAGAGGCAGAGCCAGATGCGGGAGATGGTCTTGGACGGC
GTGTGCATGACACTCGCTGGCCGCGCGGCAGAGGAGGTGCTCTGCTCGAC
CATCAGCGGCGGGGCGTCGTCTGACCTCAGGGTGGCGTCGCGGATGCTAT
ACTCGGCCATCACCGAGTGAGGGCGTGTGTGTGGGCCTTTTTGTCAGTCT
TTCCCTCCCCCTCCTCCTGCTGCTGCCGGATAAATAAGGAAGAAAGTATT
CATCTGTTTTTTTTTTGTAGAAGGTTTTATAGATAAATACGCCTCTCTGT
CTACCATATTATAAAAGCATGTGATTTATTTATTTTTTGCAGCACGACAA
AAAATGATGTGTGTGTATGTGTATGTCTGTATGTATGTCTGTATGTGTGT
ATGTGTGTATGTGTATGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
CTCTCTCTCTCTCTCTCTTTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGAAGGATTATATACCTCGACCGCCCTCTCCGGCT
GATCTGATCAATAGAACGGTCGAATGCTGCAAAATAATGATTTCCCAGGG
TCGCATTGCGTGTCAGTGGAGCGGAGTGCCGCCTCCTCGAAATAATAATT
CTCACGATTTGGACGTTAATATGTACAGAGTCGGTCCACAGCTTGCTTTA
ACCGTTACCACACGTACCCTTGTCTTTCCCGTCTCCTGGCCCCCTCTCAT
CGTAAATTTCCAGATTGTTTCAACACACCAGATTACGTCAGACTTGTTCT
TCTACTTTTTGTGTTTTTGTGTTTGTTTTTTTTTCACATTGCTCGATGGG
CGCTCCTTGCTACGAGGGCATCTTGTTACAAGAGTACTGAGCCGTGGTCA
CACAGAAGGGTTCCTTTCCCCGGGGCCCCCACTCCCCCCTTCTGCGGTGG
CTTGCCTAAGTTTTTTTGTCGCGAAAAGGGTTCAGCCGTCCCTTTCCCTC
GTCGATGGTGAGGTCGAAGTTTGTGTACACACGCTATGTAAGCGTCCTCC
ACTGACGGCCGAAATTGAGAAAAAACTCCCTCATTGCCAGAAGAGCTCGC
TTCCGCCGGGTTTCGAACCCGTGGCCTGCCTGCTAGAAGGTAACGGTGAA
CCAACTAGACTACCGGGGCACACGTGTACATTATGAGTACATAATTACAT
AAATACTACCAAAATTATTAACGTACCGACAGTGAATAGTAGTGGCACCA
TGCATGTCCCTGGCATACCCACCGGTGCAGCCCACATACCCCCCTGTTAT
TCACGTTACCCACTTCATCCCAGTCGAGACCCCCCCCCAAAAAAAAACTG
GAGCTGTTATGCTGTGCCCCCCGCCCCCCCCTGTTGTGCCTCATTTTTGT
TCGTTGTTGTGACCGATCTCTTACCCCTGCCTCGTCCGTGTCCCGGGTCT
GCGTCTTTTCTCCGTGTGTAGGGTGGGGTTCGGCAGCACGAGCCTTCTGG
CCCCCGGCAACCGGCAGCTGTCGGAGAAAGTGATGGCGGAGGTGGACGAA
GAAGTCCAGGTGAAGAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTACT
GCCTAAATACGTACGCTAACGACTGCGCTGCTCGTGCACAGGCATCAATC
AGTAAGAAAGGGTGTTACTTCTATGTAACGTGCCTTGTGCGTTTCTTGGT
TGTTTTTTTTCCCCGCAGACCCTATCGGCGCAGCAGCAGTTGTGCAGTAT
TAGTGCCTTTCTTTCTATTTAGCGTGATTTGTGGTTGGCGGGGCGCGTGG
TGCGTTTCTTGACGCTTTCGTTTCCCGCAGACCCTGTTGGCGCAGCAGTT
GTACAACAACAGCAGTACATACGTATCATCTTTTCTCTCGAACGTGATTT
CTAAATGGGGGCGCGCGTCGTGTTTGTGCGTGCTGATGTTTTTTTGTTTT
ATTGTTGTCTCTTAACTCCAGCCATATGTATGCCTTTGTGAGGGTACACG
CAGTGGCGTTGTAATCGAGTGGTTTGTTCCCATCCTGGGCACTTGTGTAA
GTGACATCTCCTCTTTTACTAACAACAGGCTCAACAAGACATTAGTGTGG
TTTGTCGTCTTGTGTATCTTCCGCAGACCCTGTTAGGCGCAGCAGCTGTA
CAAGCAGTACCTTATTTCTAACGTGATTTTTTTGTTGGCGGGGGTGCGTC
GTGCGTGCGTGTTTTGACGCTTTTGTTTCCCGCAGACCCTGTTGGCGCAG
CAGTACCAGCGCGCCTTGGGCCTCATCCGGACTCACCGTGACAAGATAGA
GAGCCTGTCGAAGGTGCTGCTGGAACGAAACGTTGTGCACAAGGCCGACC
TGCGGAAGATCTTGGGACAAAAGGTGCGTCGTGGGTGGGAGGTGTGGTAG
GTTATGTATGTACCGTAAGTCTACTCGGTTATGGGGGGCAGATCATATCT
CACGAATGGAGTTGCCTACGATGCTGTAGTTATGTTTGGCGGAAAGCTAC
AGATATAGATGTGATGTTGCTCTTTAAAAAACAAAAAAAATGTAATTACT
GAGAATTATCGTGTCAAATTAATTTGACCAATTTTAGGCCGAAATTGCAT
GAAATTTGCCTGTTTTCGTGATAAATTTAGCCGATAACATAATATCGTGT
TTTCAGGCGAGGCGTAGACGTCGCGTCCATGACTAATGTCACTGATCAAG
CGAAACAAAAGGCAAAATTCTCCGTTTAATTATTGCATACAAATTCTCCT
TTTGTAGCGTTTTTCATCCCTTTTCCGGGTTTTCAATTTTATTTTCTCTG
TTCTCCGGAGAGGGCCAAATATGGCCGTTTCAGGGCCGACTACATTGTTT
TCGGCCGTTCATGCATGCGCAGGGTGGTGCGTGCGTGTAAAAAATAAATA
AATACTGGTTTCAACCCCAAAAAAATCGTAGATTCCGAATAAATTAACGC
CGACTGCATCAGACACCGCTAAGAAAAGGGCCTGTCAATCATAACCGAGT
AGACTTGCGGGACAGAGGAAAAGGTGTACTTCTAGTAGGTATGTATGTGT
TCTTGCTAAAAATAATTGTTTTAAAAATAAACAATGAATCAAAGATGGAA
CCTACCCCACACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCC
ATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAGCAACCTAAATAT
CAGAAGAGTTCAACATCTCCCCTGCGACTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGTTGTAGACACACTTGACACTACAAC
CCTCCTTCTCCGCCTTCCCTGACTTGCTGGAAGATTTCTGTCGTAGTTTC
TTCCCTGGACTGGCCAGTTCTGGTTCTGACCCCCGATTGTACTACCGCCC
CCGACTTTTTACCGGCACAATATATCGGCAAGCCGCACAGCAAGCAAGCA
GTCCGGGATTGTTTCGTTGTTGTCGTTGTTGTCGCTGCTGTCGGCTGTCA
TTGTTTGTTGGTCGGGGATATATCTCTACATAGGCTGCCACAAGCAGTGC
GCTGGTGGGCTAGCTCCCCCCTTTTCAATCTATGCATTGCATCTGCTTCT
TTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTTATGGTGGTCGCGCGTGCGCGTGCCTGGGGCCGCCGAGCGCAGGCC
TGGGGCCGCCGAGCGCAGGCCTGGCTCTGGCTCTCTCTGTCGAGCCGAAC
CACTGCCGAGGAACACAGCAGCAATCAGAAGAGCGCCGATCGATTGCATT
CCTGTACAAAACACACATATACATACATGCGCTGTCGATGCGCGCGCGTG
ACCCCCCCCCCCCCCCGACATCCCTGCAGGTTACCGTGGAATCCGAGGAA
GCGGCAGCGGAAGCCGCGCTTACCTCTGCCCTCCTCAAAGGCGGCAGCCA
CGGCGCCCCCGCCTCCGAGCGAGGTGCGGCAGCGGCGGCGCCAAAGGAGG
ATGAGGAGGCGCATAGCATCAGAAATACTGATGCCCCCGCCAAGGTGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1938:9373..15772-

>mRNA_L-elsbetiae_contig1938.5742.1 ID=mRNA_L-elsbetiae_contig1938.5742.1|Name=mRNA_L-elsbetiae_contig1938.5742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig1938:9373..15772- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCCCTACATGACCGGCGCAGACGTGGCGAACGTGTGCGCGACGGC
GGGCAGGATAGCGGCGAGGGCGGGGTCGGACTCGGTAGTGCTCGAGCACT
TCAGCGCCGCGGTGGACCGGGTGTTGCACGGGCTGGAAAAGCCTGACAAG
ATGACGCCCTACATGACCGGCGCAGACGTGGCGAACGTGTGCGCGACGGC
GGGCAGGATAGCGGCGAGGGCGGGGTCGGACTCGGTAGTGCTCGAGCACT
TCAGCGCCGCGGTGGACCGGGTGTTGCACGGGCTGGAAAAGCCTGACAAG
CTAGTCTCGAAAGCGGACAAAGAGCGCACAGCGATCCACGAGGCTGGCCA
CGCCGTTACGGCTTGGATGCTGCCGTGGTGTGATGAGGTCGTGAAGGTCT
CCATTGTCTGGCGAGGCAATGCCCTCGCTAGTCTCGAAAGCGGACAAAGA
GCGCACAGCGATCCACGAGGCTGGCCACGCCGTTACGGCTTGGATGCTGC
CGTGGTGTGATGAGGTCGTGAAGGTCTCCATTGTCTGGCGAGGCAATGCC
CTCGGGTTCTCGCAGACGGCCATGGTGGAGAGGCAGAGCCAGATGCGGGA
GATGGTCTTGGACGGCGTGTGCATGACACTCGCTGGCCGCGCGGCAGAGG
AGGTGCTCTGCTCGACCATCAGCGGCGGGGCGTCGTCTGACCTCAGGGTG
GCGTCGCGGATGCTATACTCGGCCATCACCGAGGTTCTCGCAGACGGCCA
TGGTGGAGAGGCAGAGCCAGATGCGGGAGATGGTCTTGGACGGCGTGTGC
ATGACACTCGCTGGCCGCGCGGCAGAGGAGGTGCTCTGCTCGACCATCAG
CGGCGGGGCGTCGTCTGACCTCAGGGTGGCGTCGCGGATGCTATACTCGG
CCATCACCGAGGTGGGGTTCGGCAGCACGAGCCTTCTGGCCCCCGGCAAC
CGGCAGCTGTCGGAGAAAGTGATGGCGGAGGTGGACGAAGAAGTCCAGGG
TGGGGTTCGGCAGCACGAGCCTTCTGGCCCCCGGCAACCGGCAGCTGTCG
GAGAAAGTGATGGCGGAGGTGGACGAAGAAGTCCAGACCCTGTTGGCGCA
GCAGTACCAGCGCGCCTTGGGCCTCATCCGGACTCACCGTGACAAGATAG
AGAGCCTGTCGAAGGTGCTGCTGGAACGAAACGTTGTGCACAAGGCCGAC
CTGCGGAAGATCTTGGGACAAAAGACCCTGTTGGCGCAGCAGTACCAGCG
CGCCTTGGGCCTCATCCGGACTCACCGTGACAAGATAGAGAGCCTGTCGA
AGGTGCTGCTGGAACGAAACGTTGTGCACAAGGCCGACCTGCGGAAGATC
TTGGGACAAAAGGTTACCGTGGAATCCGAGGAAGCGGCAGCGGAAGCCGC
GCTTACCTCTGCCCTCCTCAAAGGCGGCAGCCACGGCGCCCCCGCCTCCG
AGCGAGGTGCGGCAGCGGCGGCGCCAAAGGAGGATGAGGAGGCGCATAGC
ATCAGAAATACTGATGCCCCCGCCAAGGTGTAGGTTACCGTGGAATCCGA
GGAAGCGGCAGCGGAAGCCGCGCTTACCTCTGCCCTCCTCAAAGGCGGCA
GCCACGGCGCCCCCGCCTCCGAGCGAGGTGCGGCAGCGGCGGCGCCAAAG
GAGGATGAGGAGGCGCATAGCATCAGAAATACTGATGCCCCCGCCAAGGT
GTAG
back to top