mRNA_L-elsbetiae_contig19368.5738.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19368.5738.1
Unique NamemRNA_L-elsbetiae_contig19368.5738.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: D7FX39_ECTSI (Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 3.780e-127
Identity = 185/221 (83.71%), Postives = 197/221 (89.14%), Query Frame = 1
Query:    1 QDGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            +DGAGEGGG++DA EF SEKE+AKDFALWK YKPEDG+VFW+T +GKGRPGWHIECSAMAR+FLGDT+DVHAGGIDLVFPHHENEVAQSEGFTGKPFC CWVHNAFVNVDGEKMSKSKGNFLTL  TL TALDVR FRYLVVSSQYRTTLGFS KSL+ AKNT++RLDKLRVAL  AAAA  E E     EVS  LLEVVPKSLEGFDAGMNDDLNTPR A
Sbjct:  180 EDGAGEGGGVNDAAEFESEKEDAKDFALWKGYKPEDGEVFWDTLLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFTGKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLATALDVRAFRYLVVSSQYRTTLGFSMKSLQSAKNTLRRLDKLRVALEAAAAAGNEEERGDASEVSRELLEVVPKSLEGFDAGMNDDLNTPRAA 400          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A6H5J887_9PHAE (Cysteine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J887_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 2.270e-121
Identity = 186/221 (84.16%), Postives = 198/221 (89.59%), Query Frame = 1
Query:    1 QDGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            +DGAGEGGG++DA +F SEKE+AKDFALWK YKPEDG+VFW+T +GKGRPGWHIECSAMAR+FLGDT+DVHAGGIDLVFPHHENEVAQSEGFTGKPFC CWVHNAFVNVDGEKMSKSKGNFLTL  TL TALDVR FRYLVVSSQYRTTLGFS KSLE AKNT++RLDKLRVAL  AAAA  E EG    EVS  LLEVVPKSLEGFDAGMNDDLNTPR A
Sbjct:  876 EDGAGEGGGVNDAADFESEKEDAKDFALWKGYKPEDGEVFWDTSLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFTGKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLGTALDVRAFRYLVVSSQYRTTLGFSMKSLESAKNTLRRLDKLRVALEAAAAAGNEGEGGDAREVSRELLEVVPKSLEGFDAGMNDDLNTPRAA 1096          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A835ZDL4_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA)

HSP 1 Score: 308 bits (789), Expect = 3.780e-100
Identity = 152/221 (68.78%), Postives = 167/221 (75.57%), Query Frame = 1
Query:    1 QDGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            QDGAGEGGGISD  E+ ++KE+AKDFALWKAYKPEDG VFWET +GKGRPGWHIECSAMAR++LGDT+D+HAGGIDLVFPHHENEVAQSEG TGKPFC+CWVHN FVNV GEKMSKSKGNFLTL G L TALDVR FRYLVV+SQYRT L F+   L GAK+ VKRLDK R AL +A                          L  F  GM+DDLN PR A
Sbjct:  172 QDGAGEGGGISDLDEYETDKESAKDFALWKAYKPEDGPVFWETALGKGRPGWHIECSAMARKYLGDTIDIHAGGIDLVFPHHENEVAQSEGATGKPFCNCWVHNGFVNVGGEKMSKSKGNFLTLRGALATALDVRAFRYLVVTSQYRTMLNFTPDVLAGAKSAVKRLDKARAALSKALEGXXXXXXXXXXXXXXXXXXXXXXXLAQFKGGMDDDLNAPRAA 392          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: W7U426_9STRA (Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA)

HSP 1 Score: 303 bits (775), Expect = 5.990e-97
Identity = 148/220 (67.27%), Postives = 176/220 (80.00%), Query Frame = 1
Query:    7 GAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEG-EVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            GA +GGGISDA E+ ++K +AKDFALWKAYK EDG VFWET +GKGRPGWHIECSAMARRFLG TVD+HAGG+DLVFPHHENE+AQSEG +G+ FC CWVHN FVNV+ EKMSKSKGNFLTL G+L T LDVR FRYLVV+SQYR  L F+++ L GA+ T+ RLDK++ AL   A    E +GA EG E+   +  V+ K++ GF+AGM DDLNTPR A
Sbjct:  253 GAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEGASGERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAR---EGKGAEEGGEIDEEMQGVIDKAVAGFEAGMADDLNTPRAA 469          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A7S2S4N2_9STRA (Cysteine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA)

HSP 1 Score: 280 bits (715), Expect = 3.060e-89
Identity = 137/221 (61.99%), Postives = 163/221 (73.76%), Query Frame = 1
Query:    1 QDGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            QDGA EGGG+S + +F  EK + +DFALWKAYKP+DGDV W T +GKGRPGWHIECSAM R F GD+VD+HAGGIDLVFPHHENE+AQSE  TGK FC  WVHN FVNV+ EKMSKSKGNFLTL GT  T L+VR FRY VV+SQYR  L FS ++L  +K+ ++RLD+ R A+ EAA + G A    E   SP +  +V   L+     MNDDLNTPR +
Sbjct:  155 QDGASEGGGMSSSEDF--EKRSPRDFALWKAYKPQDGDVSWTTSLGKGRPGWHIECSAMIREFFGDSVDLHAGGIDLVFPHHENEIAQSEAVTGKQFCRHWVHNGFVNVNNEKMSKSKGNFLTLRGTFKTPLEVRAFRYFVVTSQYRMPLNFSPEALAASKSALQRLDRFRTAVFEAAVSLGPASS--EDAPSPEIQALVESCLDNLQVAMNDDLNTPRAS 371          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A7S0Y3N2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y3N2_HEMAN)

HSP 1 Score: 262 bits (669), Expect = 2.330e-84
Identity = 125/215 (58.14%), Postives = 158/215 (73.49%), Query Frame = 1
Query:   22 GGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPR-CA 663
            GGI+D    G EK  A+DFALWKA+K +DGDV+WET +GKGRPGWHIECSAMARRFLG+++D+HAGG+DL FPHHENE+AQSE F G    + W+HN FVN+D EKMSKS GNFLT+   L +A D R FRY+V++S YR +L F+ + L+G++NT+KRLDK R  L+E +A        GEG+VS  + +   K LE F   + DDLNTPR CA
Sbjct:    1 GGITDPEAEGVEKRGARDFALWKAFKEDDGDVYWETSLGKGRPGWHIECSAMARRFLGESIDIHAGGVDLTFPHHENEIAQSECFCGCKMSNVWMHNGFVNIDNEKMSKSLGNFLTIRDVLKSADDCRAFRYMVIASSYRQSLNFTPEVLQGSRNTIKRLDKWRQKLIEVSAE-------GEGDVSEDVQKAADKCLEQFAVALRDDLNTPRACA 208          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A7S0EPZ0_9CRYP (Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EPZ0_9CRYP)

HSP 1 Score: 265 bits (678), Expect = 8.260e-84
Identity = 135/221 (61.09%), Postives = 160/221 (72.40%), Query Frame = 1
Query:    4 DGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPR-CA 663
            DGA EGGGI+D   F  EK+++KDFALWKAYKPEDG+V WET + KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENE+AQSE + G  +C  WVHN FVN++ EKMSKS GNFLTL        D R FRYLVVSSQYR  L F+   L+GA+NT+KRLDK R  LLE +A SG       GE   ++ E+  K    F+ GM DDLNTPR CA
Sbjct:  258 DGASEGGGITDREGF--EKKSSKDFALWKAYKPEDGEVAWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAYCGCQYCRYWVHNGFVNINNEKMSKSLGNFLTLREAFKDPNDCRAFRYLVVSSQYRAALNFAPDVLQGARNTLKRLDKWRNRLLEVSAESG-------GE---SIAEMASKCRRDFEQGMMDDLNTPRACA 466          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A7S4UT40_GUITH (Cysteine--tRNA ligase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UT40_GUITH)

HSP 1 Score: 263 bits (671), Expect = 3.200e-81
Identity = 132/221 (59.73%), Postives = 157/221 (71.04%), Query Frame = 1
Query:    4 DGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPR-CA 663
            DGA EGGGI+D   F  EK+++KDFALWKAYKPEDG+V WET + KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENE+AQSE + G  +C  WVHN FVN++ EKMSKS GNFLTL        D R FRYLVVSSQYR  L F+   L+GA+NT+KRLDK R  LLE +  SG            ++ E+  K    F+ GM DDLNTPR CA
Sbjct:  292 DGASEGGGITDREGF--EKKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAYCGCQYCRYWVHNGFVNINNEKMSKSLGNFLTLREAFKDPNDCRAFRYLVVSSQYRAALNFAPDVLQGARNTLKRLDKWRNRLLEVSMESG----------GQSIEEMAKKCRSDFEQGMMDDLNTPRACA 500          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: L1I7X3_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7X3_GUITC)

HSP 1 Score: 257 bits (657), Expect = 4.890e-81
Identity = 132/223 (59.19%), Postives = 155/223 (69.51%), Query Frame = 1
Query:    4 DGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPAL--LEVVPKSLEGFDAGMNDDLNTPR-CA 663
            DGA EGGGI+D   F  EK+++KDFALWKAYKPEDG+V WET + KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENE+AQSE + G  +C  WVHN FVN++ EKMSKS GNFLTL        D R FRYLVVSSQYR  L F+   L+GA+NT+KRLDK R    EAA      +   E E       L+V   +    D GM DDLNTPR CA
Sbjct:  186 DGASEGGGITDREGF--EKKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAYCGCQYCRYWVHNGFVNINNEKMSKSLGNFLTLREAFKDPNDCRAFRYLVVSSQYRAALNFAPDVLQGARNTLKRLDKRRREKEEAAEGGRWEDNRMEEEAEERAESLQVEKSAARSLDGGMMDDLNTPRACA 406          
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Match: A0A7S1ZX31_TRICV (Cysteine--tRNA ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX31_TRICV)

HSP 1 Score: 254 bits (648), Expect = 8.330e-78
Identity = 121/209 (57.89%), Postives = 150/209 (71.77%), Query Frame = 1
Query:   43 EFGSEKENAKDFALWKAYKPE--DGDVFWETPIGKGRPGWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSCWVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTLGFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVVPKSLEGFDAGMNDDLNTPRCA 663
            E+ ++KE  +DFALWKAYKP+    D  W+T IG+GRPGWH+ECSAMAR++LGD++DVH GGIDL FPHHENE+AQSEG TGKPFC+CW+HN FVN+  EKMSKSKGNFLTL    P + DVR +RYLVVSS YR  L F+  ++  AK  +KR+D++R  + EA       EG   GE S  + E V K L  FDA + DDL+ PR A
Sbjct:  275 EYDADKEGIRDFALWKAYKPDFDRDDAVWDTAIGRGRPGWHLECSAMARKYLGDSIDVHCGGIDLKFPHHENEIAQSEGATGKPFCACWLHNGFVNIGDEKMSKSKGNFLTLRTACPKSDDVRAYRYLVVSSHYRNPLSFTEAAVGAAKGALKRMDRVREMIGEALEGEESPEG---GEGSGPIAEAVKKELSNFDAAIADDLSMPRAA 480          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19368.5738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX39_ECTSI3.780e-12783.71Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5J887_9PHAE2.270e-12184.16Cysteine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835ZDL4_9STRA3.780e-10068.78Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
W7U426_9STRA5.990e-9767.27Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2S4N2_9STRA3.060e-8961.99Cysteine--tRNA ligase n=1 Tax=Rhizochromulina mari... [more]
A0A7S0Y3N2_HEMAN2.330e-8458.14Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0EPZ0_9CRYP8.260e-8461.09Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia p... [more]
A0A7S4UT40_GUITH3.200e-8159.73Cysteine--tRNA ligase n=1 Tax=Guillardia theta Tax... [more]
L1I7X3_GUITC4.890e-8159.19Cysteine--tRNA ligase n=1 Tax=Guillardia theta (st... [more]
A0A7S1ZX31_TRICV8.330e-7857.89Cysteine--tRNA ligase (Fragment) n=1 Tax=Trieres c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19368contigL-elsbetiae_contig19368:447..2478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue5.9e-67
Seed eggNOG ortholog55529.EKX32351
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.cysteinyl-tRNA aminoacylation
EggNOG OGsCOG0215@1,KOG2007@2759
EC6.1.1.16
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Ec32 ortholog descriptionCysteinyl-tRNA Synthetase
Ec32 orthologEc-10_004180.1
Exons4
Model size663
Cds size663
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19368.5738.1prot_L-elsbetiae_contig19368.5738.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19368 447..2478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.1480398-CDS-L-elsbetiae_contig19368:446..5961622815803.1480398-CDS-L-elsbetiae_contig19368:446..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 447..596 -
1691683112.6668618-CDS-L-elsbetiae_contig19368:446..5961691683112.6668618-CDS-L-elsbetiae_contig19368:446..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 447..596 -
1622815803.1593862-CDS-L-elsbetiae_contig19368:902..11361622815803.1593862-CDS-L-elsbetiae_contig19368:902..1136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 903..1136 -
1691683112.6830065-CDS-L-elsbetiae_contig19368:902..11361691683112.6830065-CDS-L-elsbetiae_contig19368:902..1136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 903..1136 -
1622815803.1732628-CDS-L-elsbetiae_contig19368:1597..17861622815803.1732628-CDS-L-elsbetiae_contig19368:1597..1786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 1598..1786 -
1691683112.6934834-CDS-L-elsbetiae_contig19368:1597..17861691683112.6934834-CDS-L-elsbetiae_contig19368:1597..1786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 1598..1786 -
1622815803.1877024-CDS-L-elsbetiae_contig19368:2388..24781622815803.1877024-CDS-L-elsbetiae_contig19368:2388..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 2389..2478 -
1691683112.7095819-CDS-L-elsbetiae_contig19368:2388..24781691683112.7095819-CDS-L-elsbetiae_contig19368:2388..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19368 2389..2478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19368.5738.1

>prot_L-elsbetiae_contig19368.5738.1 ID=prot_L-elsbetiae_contig19368.5738.1|Name=mRNA_L-elsbetiae_contig19368.5738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
QDGAGEGGGISDATEFGSEKENAKDFALWKAYKPEDGDVFWETPIGKGRP
GWHIECSAMARRFLGDTVDVHAGGIDLVFPHHENEVAQSEGFTGKPFCSC
WVHNAFVNVDGEKMSKSKGNFLTLSGTLPTALDVRGFRYLVVSSQYRTTL
GFSSKSLEGAKNTVKRLDKLRVALLEAAAASGEAEGAGEGEVSPALLEVV
PKSLEGFDAGMNDDLNTPRCA
back to top

mRNA from alignment at L-elsbetiae_contig19368:447..2478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19368.5738.1 ID=mRNA_L-elsbetiae_contig19368.5738.1|Name=mRNA_L-elsbetiae_contig19368.5738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2032bp|location=Sequence derived from alignment at L-elsbetiae_contig19368:447..2478- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACGGAGCGGGCGAGGGTGGAGGCATCAGCGACGCGACTGAGTTCGG GTCGGAAAAGGAAAACGCCAAGGATTTTGCGCTGTGGAAGGTACATCTGT AAAAGACGAGCCTTCCCAGGCCAGCAGTTTACATCATTACCAAGAGTTTC GATACTGAGCCGACGCCGGTCGTCCGCTGCCGAGGATTGTGGTTCCATGC TGTGCTTTGGCGCCCGCCCACCTCTTACGCCGCATCGTTGCCGCTATATT CTTTCGCGCAGCAACTTGGCAGTAGTAGTTTCCTCGGAGGGTATGTTTTT TTCTTGCTCCCGCTCGTCGACCGACCCTGTGTTGAGGTCCGCGTGCAAAC CGCCGCGAGGCGCTTCAAATAACACGAGACCCGAGTGGGGCCCCAGCCCC GCCTCAAAGCCTGAGCGCAATACACGACACTCTTGAGCGATGCTTCCAAA TGTAGGCTATCGACCATCTAGACCGGACACTTTCCCCGCCACAACGCAGC TCCCCCCCGCGCGCCAAAAGGTATGCTTCCAAGACAGTGTTCAACGCCAA CACACACATAGGGCCTCAGTGTTGTTGCTACTGACAAGCGAAGCAAACGA GTGCATGATATACTCGTTTTCCGGCTCCCTCCGGCTCCCTCCCTTTCCCC CTCTCTGCTCGCCCACTGGGGGCAATCTGCCCGCGTCCCCAGGCGTACAA GCCCGAGGACGGCGACGTGTTCTGGGAGACCCCGATCGGGAAGGGCCGGC CCGGATGGCACATCGAGTGCAGCGCCATGGCTCGGCGGTTCCTGGGGGAC ACGGTGGACGTGCACGCGGGGGGCATAGACCTGGTCTTCCCGCACCACGA GAACGAGGTCGCGCAGTCGGAGGGATTCACGGTGAGGGAGGGTGTGAGCG AGCTTGTCAGGTGTGGGTGTGTTGAGGGTTGTCTTGTGTCTTTGATGTCC GCAAGGAGGAAGAGGAGGAGCAGGAGGAGTCCGTACGTTTGGCGCGACGG CGACCACCCTTCGTGGACGAAATCTGGATTCGGCGATCCTGGCCTCCCCG GGCGTGCGCGCTGCGCTCGTTGCGCGGGGCGCTCTCGCCGATTTGCGGGA TCAGGCACGCCCATTCCTTTCCCTAAAGCCCGGGCGGCTTCCCGCACGGC ACGCTGGACTAGCGCGAGTGCCCTGAACACTGCTTTCGGCCCGACCGGGT CGATACCAAACCAAACTGGAAACCTTATCGTACACCATTGCATACCTCGT ATATACCACGCGCGCATCACGTGCATCTGATAAATATGCATCACATACAT ATATCATGCGTACTACATGTGTTATCACATATATGATCGCAGGGGAAGCC CTTCTGCAGCTGCTGGGTGCACAACGCGTTCGTCAATGTGGACGGCGAGA AGATGTCCAAGTCCAAGGGGAACTTCTTGACGCTCAGCGGCACGCTGCCC ACGGCCCTCGACGTGCGGGGGTTTCGATACCTGGTTGTGTCGTCGCAGTA CCGAACGACCCTCGGGTTCTCCAGCAAGTCCTTGGAGGGCGCGAAGAACA CGGTGAAGCGGCTCGACAAGCTGCGGGTGAGCGCGGCGTGGGTTCTGTTA AGGGGTTCGGTGGGGGGCGAGAGGCGACCGGCTCCGCTGACGCGTGGTTT TGTGTTGCTGGTTGGTGTGAGAGCTCGGGGCGGTGCGGTCGTGTTTTGGC GTTTTATTTTTTATTTTTCGCCGTGCGGTGTTGCTTGCGGTCTCGCTGGC TGGTCTTCGCGCGCTTTTTTTGGGCCATGTAAGCAGCTGTTCGTTGCAGC AGTAAATGGCCGATCGGGATTTCGCGAGGTTTCTTTCATGCACCGGTCGT GACCGACCGATCCCCGTGGTTGCGCCCCGCAGGTGGCGCTTTTGGAGGCT GCAGCCGCATCTGGGGAAGCTGAAGGGGCCGGAGAAGGGGAAGTGTCCCC GGCGCTGCTCGAGGTCGTTCCGAAGAGCCTCGAAGGTTTCGACGCCGGCA TGAACGACGACCTCAACACGCCAAGGTGTGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19368:447..2478-

>mRNA_L-elsbetiae_contig19368.5738.1 ID=mRNA_L-elsbetiae_contig19368.5738.1|Name=mRNA_L-elsbetiae_contig19368.5738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig19368:447..2478- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACGGAGCGGGCGAGGGTGGAGGCATCAGCGACGCGACTGAGTTCGG
GTCGGAAAAGGAAAACGCCAAGGATTTTGCGCTGTGGAAGCAGGACGGAG
CGGGCGAGGGTGGAGGCATCAGCGACGCGACTGAGTTCGGGTCGGAAAAG
GAAAACGCCAAGGATTTTGCGCTGTGGAAGGCGTACAAGCCCGAGGACGG
CGACGTGTTCTGGGAGACCCCGATCGGGAAGGGCCGGCCCGGATGGCACA
TCGAGTGCAGCGCCATGGCTCGGCGGTTCCTGGGGGACACGGTGGACGTG
CACGCGGGGGGCATAGACCTGGTCTTCCCGCACCACGAGAACGAGGTCGC
GCAGTCGGAGGGATTCACGGCGTACAAGCCCGAGGACGGCGACGTGTTCT
GGGAGACCCCGATCGGGAAGGGCCGGCCCGGATGGCACATCGAGTGCAGC
GCCATGGCTCGGCGGTTCCTGGGGGACACGGTGGACGTGCACGCGGGGGG
CATAGACCTGGTCTTCCCGCACCACGAGAACGAGGTCGCGCAGTCGGAGG
GATTCACGGGGAAGCCCTTCTGCAGCTGCTGGGTGCACAACGCGTTCGTC
AATGTGGACGGCGAGAAGATGTCCAAGTCCAAGGGGAACTTCTTGACGCT
CAGCGGCACGCTGCCCACGGCCCTCGACGTGCGGGGGTTTCGATACCTGG
TTGTGTCGTCGCAGTACCGAACGACCCTCGGGTTCTCCAGCAAGTCCTTG
GAGGGCGCGAAGAACACGGTGAAGCGGCTCGACAAGCTGCGGGGGAAGCC
CTTCTGCAGCTGCTGGGTGCACAACGCGTTCGTCAATGTGGACGGCGAGA
AGATGTCCAAGTCCAAGGGGAACTTCTTGACGCTCAGCGGCACGCTGCCC
ACGGCCCTCGACGTGCGGGGGTTTCGATACCTGGTTGTGTCGTCGCAGTA
CCGAACGACCCTCGGGTTCTCCAGCAAGTCCTTGGAGGGCGCGAAGAACA
CGGTGAAGCGGCTCGACAAGCTGCGGGTGGCGCTTTTGGAGGCTGCAGCC
GCATCTGGGGAAGCTGAAGGGGCCGGAGAAGGGGAAGTGTCCCCGGCGCT
GCTCGAGGTCGTTCCGAAGAGCCTCGAAGGTTTCGACGCCGGCATGAACG
ACGACCTCAACACGCCAAGGTGTGCTGTGGCGCTTTTGGAGGCTGCAGCC
GCATCTGGGGAAGCTGAAGGGGCCGGAGAAGGGGAAGTGTCCCCGGCGCT
GCTCGAGGTCGTTCCGAAGAGCCTCGAAGGTTTCGACGCCGGCATGAACG
ACGACCTCAACACGCCAAGGTGTGCT
back to top