mRNA_L-elsbetiae_contig19363.5737.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19363.5737.1
Unique NamemRNA_L-elsbetiae_contig19363.5737.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19363.5737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19363contigL-elsbetiae_contig19363:1882..2214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.0882206-UTR-L-elsbetiae_contig19363:1881..18991622815803.0882206-UTR-L-elsbetiae_contig19363:1881..1899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19363 1882..1899 +
1691683112.6448793-UTR-L-elsbetiae_contig19363:1881..18991691683112.6448793-UTR-L-elsbetiae_contig19363:1881..1899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19363 1882..1899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.1128964-CDS-L-elsbetiae_contig19363:1899..22141622815803.1128964-CDS-L-elsbetiae_contig19363:1899..2214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19363 1900..2214 +
1691683112.6557846-CDS-L-elsbetiae_contig19363:1899..22141691683112.6557846-CDS-L-elsbetiae_contig19363:1899..2214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19363 1900..2214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19363.5737.1prot_L-elsbetiae_contig19363.5737.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19363 1900..2214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19363.5737.1

>prot_L-elsbetiae_contig19363.5737.1 ID=prot_L-elsbetiae_contig19363.5737.1|Name=mRNA_L-elsbetiae_contig19363.5737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MCCVHHESIINTDEGEHRCNMPHMHRLINNDVYCTNGRCMWEDWASCCVY
SRREWYRASTTTKNIYVRVDLTWTKGQETATNSYISHKHTVRGACAVCRG
DVGVI
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mRNA from alignment at L-elsbetiae_contig19363:1882..2214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19363.5737.1 ID=mRNA_L-elsbetiae_contig19363.5737.1|Name=mRNA_L-elsbetiae_contig19363.5737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig19363:1882..2214+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTTTGCGATATATAGTATGTGCTGCGTGCACCATGAATCCATCATCAA
CACAGATGAAGGTGAACACAGATGTAACATGCCGCACATGCATAGGTTGA
TAAATAATGACGTATATTGTACCAATGGTAGGTGCATGTGGGAGGATTGG
GCTTCCTGTTGCGTTTACAGCAGACGGGAATGGTACAGGGCTTCAACAAC
AACAAAAAATATATATGTTCGTGTCGATCTGACGTGGACAAAGGGACAAG
AGACAGCAACAAATTCATATATATCGCACAAGCATACCGTGCGTGGAGCG
TGTGCCGTGTGCCGAGGTGATGTAGGGGTGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19363:1882..2214+

>mRNA_L-elsbetiae_contig19363.5737.1 ID=mRNA_L-elsbetiae_contig19363.5737.1|Name=mRNA_L-elsbetiae_contig19363.5737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig19363:1882..2214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTGCGTGCACCATGAATCCATCATCAACACAGATGAAGGTGAACA
CAGATGTAACATGCCGCACATGCATAGGTTGATAAATAATGACGTATATT
GTACCAATGGTAGGTGCATGTGGGAGGATTGGGCTTCCTGTTGCGTTTAC
AGCAGACGGGAATGGTACAGGGCTTCAACAACAACAAAAAATATATATGT
TCGTGTCGATCTGACGTGGACAAAGGGACAAGAGACAGCAACAAATTCAT
ATATATCGCACAAGCATACCGTGCGTGGAGCGTGTGCCGTGTGCCGAGGT
GATGTAGGGGTGATCATGTGCTGCGTGCACCATGAATCCATCATCAACAC
AGATGAAGGTGAACACAGATGTAACATGCCGCACATGCATAGGTTGATAA
ATAATGACGTATATTGTACCAATGGTAGGTGCATGTGGGAGGATTGGGCT
TCCTGTTGCGTTTACAGCAGACGGGAATGGTACAGGGCTTCAACAACAAC
AAAAAATATATATGTTCGTGTCGATCTGACGTGGACAAAGGGACAAGAGA
CAGCAACAAATTCATATATATCGCACAAGCATACCGTGCGTGGAGCGTGT
GCCGTGTGCCGAGGTGATGTAGGGGTGATC
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