mRNA_L-elsbetiae_contig1936.5734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1936.5734.1
Unique NamemRNA_L-elsbetiae_contig1936.5734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1936.5734.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.120e-34
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2 
Query:   29 MSRQRYDDDEDGPPVGVSLLLFILGAVALCIAGVYLRASTLHEREIKISAYEETISAWNSSRSTFGRLSVNVTAHFGVAPPNTTSPGMDP 298
            M R RY+++  GPP  VS LL ILG  ALCIA VYLRASTLH+REIKISAYEETIS W + R TF RLS+NVTAHFGVAP NTTSPG+DP
Sbjct:   31 MPRARYENE--GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDP 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1936.5734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE5.120e-3473.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1936contigL-elsbetiae_contig1936:12950..18869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1936.5734.1prot_L-elsbetiae_contig1936.5734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1936 12950..18869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.9217174-CDS-L-elsbetiae_contig1936:12949..130741622815802.9217174-CDS-L-elsbetiae_contig1936:12949..13074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 12950..13074 -
1691683112.5625641-CDS-L-elsbetiae_contig1936:12949..130741691683112.5625641-CDS-L-elsbetiae_contig1936:12949..13074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 12950..13074 -
1622815802.932892-CDS-L-elsbetiae_contig1936:15063..151641622815802.932892-CDS-L-elsbetiae_contig1936:15063..15164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 15064..15164 -
1691683112.572989-CDS-L-elsbetiae_contig1936:15063..151641691683112.572989-CDS-L-elsbetiae_contig1936:15063..15164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 15064..15164 -
1622815802.9427364-CDS-L-elsbetiae_contig1936:16466..165091622815802.9427364-CDS-L-elsbetiae_contig1936:16466..16509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 16467..16509 -
1691683112.5897863-CDS-L-elsbetiae_contig1936:16466..165091691683112.5897863-CDS-L-elsbetiae_contig1936:16466..16509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 16467..16509 -
1622815802.9532592-CDS-L-elsbetiae_contig1936:18838..188691622815802.9532592-CDS-L-elsbetiae_contig1936:18838..18869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 18839..18869 -
1691683112.6022549-CDS-L-elsbetiae_contig1936:18838..188691691683112.6022549-CDS-L-elsbetiae_contig1936:18838..18869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 18839..18869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1936.5734.1

>prot_L-elsbetiae_contig1936.5734.1 ID=prot_L-elsbetiae_contig1936.5734.1|Name=mRNA_L-elsbetiae_contig1936.5734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
QGLGLRYWQHVQTAVRRRRRRAPRGRVASPLYSRRGGPVHCWGVPQGVYA
ARERDQDFGLRGNHLRLELFPFDVRPPVGQRHGALRGGPAEHHVSGDGP*
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mRNA from alignment at L-elsbetiae_contig1936:12950..18869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1936.5734.1 ID=mRNA_L-elsbetiae_contig1936.5734.1|Name=mRNA_L-elsbetiae_contig1936.5734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5920bp|location=Sequence derived from alignment at L-elsbetiae_contig1936:12950..18869- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGCCTTGGGCTGAGGTATTGGCAACATGGTGAGTGGGTGGATGTTGT
TTAGAGCGTAAGTTGTTTCTTTACCATTTGGCCGGGCGCTTGATTGTGTT
GCTGCTTGGGCTTCTCTACGTGGTACCAAATCTAGATTTTATTGCGGCTG
TACGTAGTACTAGTGTCCAGCAGCGAGCAGCAGCGCGGTCTCGTGTCTTA
TACATACGCGGCCCGCTTTCCTGTCGCTGTAGATTGCCGGATCAGAACTA
AAAGAGCAGTAGGCCACGGCGATCGGTAGGTATAAGACGGGCTTCTATGT
ACTTTTCCCTGATAACCTTGGTATGTATGTAGCAGCCCCCTCTAACCTGA
CACCTGACAGAAGGAAAGCTTTTAGGGTTCTAATCGCGGACCACCTCACT
TCGGGGATTGTGCTGTTGCAGTACACACATCGACTATTTATTTGCACAGT
GGTTAGATTAGAATACATACGCAGGGGGAAGCGGACATTTGGTCTGGCAG
CCAGAGAGAATCCGCTGGAGGCATTGCGTTCCGGTACAAAAGAAAGGTAT
CCGCCATTCGCGTTTATGTGTAGGTCGTGGAGGGGGCGGGGCGGAAGCAG
TGGCGGCAAAAGCTGCTTTGTAGAAAGATTGCTGGGAGGTGCCACGTCTC
AGTGAGTGTCAATTGTGTATCTAGATAGTAAACATGACTGCAGACTGCGT
CCATGTACAGACTTCGTTGTTGGCGAGGGCGGGGAGTGCTGAACCCTGCT
CGCGATAAAAACGCCACAGGCAGGCACCGCAGGAGGGGGTCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCGCCGGGCGGGCTCCCGGCCGCTTCTTA
TGNNNNNNNNNNTTGTTGGGGGGGGGGGGGGGGGGGGAACCCCTCCCCCG
AAAAAAAACCCCCCGGCGGGGCCCGGCGGGGGGGGGCCCCCCCCCCCCCC
CCCTCCTTGTGACCCCGGTTGGATCGTCTAGCTAGTCGTATATCTAAGTG
AAGAAAGGGGGCCAACGGGGCAGACGGCGAATAAGCCAACAATGGGAGGA
AAATAAATAAAAATGAAGTATATTTATAGGGTACACGGTAGAGTTCTTTC
TCTGCCGGATACGACGTTACACCTGTAGGGTTAATTAACCCTTTTAGTAC
TGGAAGCCCGTTTGGAGAAAAAAATGGTGACACCTAAAATTTGCCCACTG
TTCTCGGCCTAGACTTGCAATGGTAGTCTACGGAACCGGTATAACGGCTT
GGGGGCACCCCGCCGAGGGGTGTGAACACCTACCCCCCACTTGCCCTGCA
CACAACTCCACAGCAGTGCTGGAGACACAACTGAGTTGTTGCGGATATAT
TAAAAAACTCGAAGAGCAAAATCGCCGCGATTCGTACCTTCCGCGGCGCC
CTGGCGGTTCAGCCGTTTGAGCCGCACAGCGCACACACCGCTTTGCTGTC
ACTCTTAGGAATCACCGTCTGCTGAGCTTCGAGCGGGTTGCGTCGCCCGC
CACGCTCTATTGTGTGTTGTGAGGGCTGCTTCATGTTTTTACACACGCAC
AGCTCAGCGTTCACGTCATGTCTCTACAGCAGAGAAGTCTGTATTGTCTC
GTACGCTAATACAACTTGTACTGCGTTTCAGTATACTTTTTTTCTCCAAA
CGATTTGGACAGTTTGACTTGCGTTTTGAATACAATTTTTCAATTTTTCT
CCAAATGATGTCGGGGCTCCGCAGCTGCAAAATGGAGAGACTGTTGTTTC
TCGGCCAATCAGTGGGCACCCAGAAGGCGCGATAATATTTTGGCGATAAT
TTTTTTTCAGAGGGCTGGCGTACTAAAAGGGTTAAGGTTAATTTATGTAG
ATCATTCACATCGGGTTAGTTCCTCATCAAATAATAAGTCCTGAGAGGCT
TGTGGCGTCTTTGCATGCGTCTCTACATACGTTTCTTCCTCCGAGGGGGG
GAGGGAGGTCTATGCCGCCCACACCTACATACATACATGCATGCATACAT
ACCTACCCGTATCTGTATGACACACGAAACCCCCAAGGATACCCAGCGAC
AGCAGTATTTAGTGCCTATGGTACATAATATGTAGTACATCCACCCCTGT
AACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCTTCCCCCACCCCGCCGCCGCCCTCCTGGNNNNN
NNNNNCAGCATTATTTAGTGCCTATGGTACATAATATGTAGTACATCCAC
CCCTGTAACCCCCCCCCCCCGTCCCGCATCCCCCCGCATCTCCCCGCTCC
CTACCCATGCTCTGCGTCCGTGTGCAAAATTGGCGCTGCGGCTGCTGGAC
ATCCGAGCAGTCCAGACAGCGGTACGACGACGACGAAGACGGGCCCCCCG
TGGGTGAGGAAAAGTTGTACGCGGTAGGTACGTACGTACGTGGGGTTGGT
TGGTTTTACTCACGGGGAGAAGAAGAATCGAGGAGTAGGAGGAGGAGCGA
ACCCGTGTGCGGTACATAGACATACAGATGTTTTGCCGGAGCAGCACGAG
AGTGTACTACCTATATGTGGGAGGGGGGTCAAAAATCAAATCAATTTTTT
GCCGTATGTAGCAGCACGAGAGTGTACACACGGTAGTAGGCGGGGGGTCA
AATCAAATCCAAACTCGACACACCAGAATGGTGAACTCGGGGACGCGCGA
CTCTTTTGGGGCCAGGAAAACAAGAGTGTAACTCAGAGATCCGTCCCCCC
CACCCCTTTTCGTCAGATTCCCTGCCGGCCCGGCCCGTGCGGGGGGGTGT
ATATACGAACCGTAGGTGACACAAGATACCACACCCCCTGGACCGAACTC
TAGAACTCCATCATTCCGTAACTAAGAAGGTGCCAGCACCAGCAACACAT
GTTCGGACATCCCTCGACTAGATCTTTCCAATGCCACCTCTTTCGGCACT
GGCACTCTTCTTGCTGAGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGG
GTGTGGTATCTTGTGTCACCTACGGTATATACCAACCCCTACAAAACGCC
CCCAAGTTTTCACCGTGGCACAGATGCAGAGAGGAGTGCGTGCGAGGGTG
TGTGTATATATATACCAACTCCTAAAAAACGCCCCCAAGTTTTCACCGTG
GCACAGGCGCAGAGAGAGGTGCGGGGGGGTGTATGTACCAATCCCTAAAA
ACCGCCCCCGATTCTGCACCCGTGGTACACAGGTGCAGGGAGAGGTGGCT
CAACTCCCAACCGAAAAACGGATTCTGAAGCAGGCCATATTTGCTCGTAT
TTTGGTATGTATTTTTGGCATTGTACAATCTCCTGTACCTTCTCTCCTGT
GCGGTCCTGGTTGGGTCGTCTAGCTGAATAGTCGTAGTGGAGGAAGGGGG
CCAGTGAGTGGGGCAGACGCCGAATACATACGCCAATAATGGGAGGGAAC
AAGTGTTAATAAAAATATCCATGTATCTTTTACTTGGTATATGTTTGTTT
CCCTTCTGTTCTCAGTCGCTGCTGTGTGTGTGCACCGCCGTCAACAGCAG
TGTCCTGAATCAAGCCTCCCCCCCCGCCCCCCCCCCCCCCCCCCCCGAAA
CAAAGCAGTGTGTACCCCAGCCAATCTCCCCCCCCCCCCCCCCCCCCCTC
CCCCCGCAACCCCCCCACGAAACATCGGCAATAAAAAACTGAAAACACAA
ACCAGGCGTGTCGCTTCTCCTCTTTATTCTCGGCGCGGTGGCCCTGTGCA
TTGCTGGGGTGTACCTCAGGGCGTCTACGCTGCACGAGAGAGAGATCAAG
ATTTCGGTGAGAGCCTACCAGTAGCCTTAGCCTTCGCACGTTTTTACTAC
TGTAAAATCGGGGCACCAACGAACCCCCGGTCGGCACGACAAATGGGGGG
AGGCGTTTGCGCCGGAAAAGTGTGTTGGAATTAGAGAGGAAAGCTCAGTG
TCTACCTGTTTACCAACCTACCAGTAGCCTTCGCACGTTTTTATACTGGA
AAAGAAATCATACGGTATGTACAAAGTATGGAAATGGCTAATGGGGGGTC
GGTTTGGGGTGAGGGGGTTAGGGGGTTAGGGTTAGAGTTACGGAACCCCT
GCCGGTTCCCGAGGCCTACCTTCCCGCCCCCGACCGCGGGTGCGTGTTTT
GCGTGCGTGCGGCGGTGTGTCTTTTGCCCTCCTCTGTGAGAAGGAAATGC
TTCTTTGTCGCTTATCATCTCCTGGCTTTTGAGATCCTTTTGAGAAGGAA
AGAGAGCACTGCTTAATGAGAAAAGAAGTCAATAAAACGGTCTTTTTTTC
TTCTTTTTTTTTCGCCGCTTTTTTTTAGCATTTTGCCGCTGAATCACACC
CCCCGCGGGCCTCTGGGGGGTACCACTTGCTTACTGCCCGCTGGGTTTTG
CGATCGTTTATGAGGACAGTAGCCTTCGCAGGTTCGTTCTACTGGAAAAC
ACCATATGGGACAAAGTGTGGAAACGGCTTGATGGGGGGTCGGTTTGGGG
GTTAGGGTTACGGTTACGGTTACGGAACCCCCGTCTATTATTTCCCATGT
ATTTATGGGTTAGGGTTAGGGTTACGGAACCCCCGTCTTGTATTTCCCAT
GTATGTAGACAGGAATTCTTCGCGAAGGCTGGCAATTGAAGAACACCGCT
TAGTTGAACGAAGTATTAAGGAAAGGCACACGACAGCCTTGTGTGTGTGT
GTGTGTGTTTTCGCTCCTCTTCCTGCCCTGCCTGCCCGACGCTCAACGAC
CAGGGCCAACTTTAAACCCAACCGTGTCTTAAAAGCCTACCCTATCCAAG
GTCTTGTACAGACCACACGGGGCATTCGTTCATTGCACATGGTGGTGTGT
GGCGGCACACGCCAGGTGTGAAGTGTGTCATGCCCGCCCACCCGCCCGCC
CGCCCGCCGCCCGCGCTATGTAGTAGAATCACGGCGCCCCGCTCTGCCAG
GCCTACCTATTTACGAGAGCGAAGGGACCATCAATCACCGCCTGGGACCC
CGACCGCCAAGGGTACACCTACCCCCAGCTCTTTAGACCGCTCATTAGCA
TTCGCTGGCCCCCCGGACGTTGGATGATGGTGTGAGCCACGCACGACGTG
ACGTGTGTGGGGCTGCCATGCTTCGTTTCCCCACCGCTGCCCGCGCCAAG
TAAACCCTCGGTTCACGACCCTGCCCACCCGCTGCCATCATGCCGGAGGC
CTACGAGCGGAGACCATCTCATATCTGCCCAGAATTTCCTCCGCTAAGCC
TTGATTAACCCCAGCTTCAAAGACCACTCGCGCGTGCCACGCGCGTGTAA
GCTGAGCTGACCCCGGGTGTTTATTTGATTGCATTTGGTGTGTACGTACG
CCGTGCCCGCGTCTTGTCTCCCGACCGCTGCTGCCCGCGCCAGATAAGAT
CTCGGCGCCAGTAGATACCGGTTACACCGCGACAGTAGATCTTTAGGACT
ACGTGCCATATGCGCCCTCTGATTGGTCAAAAGCGTGTGTGCTGTGCGGG
GGACCACGTTCTGACCTGCGGACCACGCGCCCCGCGAAGGCGGCGGCGCA
GCCGCGTTCGCGGCGATTTCTCGGCCCCCCACGGCCCCGGTTGGACGTCG
GTGCGGGTTAAGGGTTGGGCTGGGTGGGTTGGGTTGGGTTGGGTCGGTCA
CGTGTGTTGTCTTTTGTGTTTCTGAGTGTGAACAATCTGCAAAACATTCG
TGCTATTTAGCAAGGAAAGTGCTACAATACTATCACTGCTGTGTAACCCA
ACCTCCTCGGCGCCCTGCTCGCCCGTTGCCGTCATATACCACAAGGCCTA
CGAGGAAACCATCTCCGCCTGGAACTCTTCCCGTTCGACGTTCGGCCGCC
TGTCGGTCAACGTCACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACG
TCTCCGGGGATGGACCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1936:12950..18869-

>mRNA_L-elsbetiae_contig1936.5734.1 ID=mRNA_L-elsbetiae_contig1936.5734.1|Name=mRNA_L-elsbetiae_contig1936.5734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig1936:12950..18869- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGCCTTGGGCTGAGGTATTGGCAACATGCAGGGCCTTGGGCTGAGGT
ATTGGCAACATGTCCAGACAGCGGTACGACGACGACGAAGACGGGCCCCC
CGTGGTCCAGACAGCGGTACGACGACGACGAAGACGGGCCCCCCGTGGGC
GTGTCGCTTCTCCTCTTTATTCTCGGCGCGGTGGCCCTGTGCATTGCTGG
GGTGTACCTCAGGGCGTCTACGCTGCACGAGAGAGAGATCAAGATTTCGG
CGTGTCGCTTCTCCTCTTTATTCTCGGCGCGGTGGCCCTGTGCATTGCTG
GGGTGTACCTCAGGGCGTCTACGCTGCACGAGAGAGAGATCAAGATTTCG
GCCTACGAGGAAACCATCTCCGCCTGGAACTCTTCCCGTTCGACGTTCGG
CCGCCTGTCGGTCAACGTCACGGCGCACTTCGGGGTGGCCCCGCCGAACA
CCACGTCTCCGGGGATGGACCCTAAGCCTACGAGGAAACCATCTCCGCCT
GGAACTCTTCCCGTTCGACGTTCGGCCGCCTGTCGGTCAACGTCACGGCG
CACTTCGGGGTGGCCCCGCCGAACACCACGTCTCCGGGGATGGACCCTAA
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