mRNA_L-elsbetiae_contig19358.5732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19358.5732.1
Unique NamemRNA_L-elsbetiae_contig19358.5732.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19358.5732.1 vs. uniprot
Match: D7FR19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR19_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-18
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  100 MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIR 207
            MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIR
Sbjct:    1 MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIR 36
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19358.5732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR19_ECTSI1.140e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19358contigL-elsbetiae_contig19358:88..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FR19
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBPC@1,2S5NA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-09_002870.1
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.8303816-CDS-L-elsbetiae_contig19358:87..2941622815802.8303816-CDS-L-elsbetiae_contig19358:87..294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19358 88..294 +
1691683112.524565-CDS-L-elsbetiae_contig19358:87..2941691683112.524565-CDS-L-elsbetiae_contig19358:87..294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19358 88..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19358.5732.1prot_L-elsbetiae_contig19358.5732.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19358 88..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19358.5732.1

>prot_L-elsbetiae_contig19358.5732.1 ID=prot_L-elsbetiae_contig19358.5732.1|Name=mRNA_L-elsbetiae_contig19358.5732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
PPPPQPPSPPHPPREQGEKCQVCGHKGKGKIYQMLTDMPCEKGLNFRFFD
QRTNKQWFKGYWALARIIR
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mRNA from alignment at L-elsbetiae_contig19358:88..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19358.5732.1 ID=mRNA_L-elsbetiae_contig19358.5732.1|Name=mRNA_L-elsbetiae_contig19358.5732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig19358:88..294+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCCCCCCCCAACCTCCATCTCCACCTCACCCCCCGCGGGAGCAGGG
AGAGAAGTGCCAGGTGTGCGGGCACAAGGGCAAGGGCAAGATCTACCAGA
TGCTGACGGACATGCCCTGTGAGAAGGGGCTAAACTTCCGGTTTTTCGAC
CAGCGCACCAACAAGCAGTGGTTCAAGGGCTACTGGGCTCTCGCGCGCAT
CATCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19358:88..294+

>mRNA_L-elsbetiae_contig19358.5732.1 ID=mRNA_L-elsbetiae_contig19358.5732.1|Name=mRNA_L-elsbetiae_contig19358.5732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig19358:88..294+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCCCCCCCCAACCTCCATCTCCACCTCACCCCCCGCGGGAGCAGGG
AGAGAAGTGCCAGGTGTGCGGGCACAAGGGCAAGGGCAAGATCTACCAGA
TGCTGACGGACATGCCCTGTGAGAAGGGGCTAAACTTCCGGTTTTTCGAC
CAGCGCACCAACAAGCAGTGGTTCAAGGGCTACTGGGCTCTCGCGCGCAT
CATCCGACCCCCCCCCCCCCAACCTCCATCTCCACCTCACCCCCCGCGGG
AGCAGGGAGAGAAGTGCCAGGTGTGCGGGCACAAGGGCAAGGGCAAGATC
TACCAGATGCTGACGGACATGCCCTGTGAGAAGGGGCTAAACTTCCGGTT
TTTCGACCAGCGCACCAACAAGCAGTGGTTCAAGGGCTACTGGGCTCTCG
CGCGCATCATCCGA
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