mRNA_L-elsbetiae_contig1934.5727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1934.5727.1
Unique NamemRNA_L-elsbetiae_contig1934.5727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A6H5JKV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV4_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 2.340e-90
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELFK 414
            VS GVFRSGYPIACNFPFLRRLGL+S+LCLCPESVLPGSL WAK++GV MEMC LGENSPPFVSMPLAAMRKAVDYLSD RNRPVLVHCLTGKTQTGCAIGCLRRRQ+WALGAIFDEY RFAGPSAKPLDMQFIELF+
Sbjct:   73 VSVGVFRSGYPIACNFPFLRRLGLQSILCLCPESVLPGSLEWAKESGVSMEMCDLGENSPPFVSMPLAAMRKAVDYLSDCRNRPVLVHCLTGKTQTGCAIGCLRRRQNWALGAIFDEYTRFAGPSAKPLDMQFIELFE 210          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A835YPN6_9STRA (Tyrosine phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.530e-54
Identity = 81/137 (59.12%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            VS GV+RSGYPIACNF FL+ L LR+VLCLCPES   GSL WAK +G  + +  + +N  PFV M   A+ +A+D ++D ++RP+LVHCLTGK++TGC +GCLRR Q W+L AIFDEY RF+  S   LDMQFIEL+
Sbjct:   62 VSPGVYRSGYPIACNFNFLKGLRLRTVLCLCPESCRRGSLEWAKSSGAALHLVSVSDNKEPFVWMDEQAVAQALDLIADPKSRPILVHCLTGKSRTGCVVGCLRRLQGWSLAAIFDEYLRFSAGSGSLLDMQFIELW 198          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A1Q3BVJ1_CEPFO (Y_phosphatase2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BVJ1_CEPFO)

HSP 1 Score: 150 bits (378), Expect = 3.600e-43
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  G+FRSG+P + NF FL  LGLRS++CLCPE     ++A+ K  G+R+   G+  N  PFV++P   +R+A++ + D RN PVL+HC  GK +TGC +GCLR+ Q W L ++FDEY RFA   A+  D +F+ELF
Sbjct:   52 VDNGIFRSGFPDSANFSFLLTLGLRSIICLCPEPYPETNMAFLKSNGIRLFQFGIENNKEPFVNIPEDTIREALNVVLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLSSVFDEYQRFAAAKARISDQRFMELF 188          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A059CAJ9_EUCGR (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CAJ9_EUCGR)

HSP 1 Score: 149 bits (377), Expect = 4.290e-43
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  GVFRSG+P   NF FL+ LGLRSV+CLCPE    G+  +    G+R+   G+     PF+++P  A+R+A+  L D RN PVL+HC  GK +TGC +GCLR+ Q W L +IFDEY RFAG  A+  D +FIELF
Sbjct:   46 VDGGVFRSGFPDGANFSFLQSLGLRSVICLCPEPYPEGNSEFLAANGIRLFQFGIENCKEPFINIPDEAIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYQRFAGTKARVSDQRFIELF 182          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: L8H378_ACACA (Tyrosine specific protein phosphatase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H378_ACACA)

HSP 1 Score: 148 bits (374), Expect = 5.640e-43
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V+ GV+RSGYP   NFPFL+++GL+S+L LCPE+    +L + +  G+++   G+  N  PFV +P   +R A+  L D RN PV++HC  GK +TGC +GCLR+ Q W+L  IFDEY RFAG   + LD QFIELF
Sbjct:   22 VAPGVYRSGYPNKKNFPFLKKMGLKSILYLCPEAYPDENLEFLEKYGIKLLHFGINGNKEPFVEIPPHVIRNALVDLLDVRNHPVMIHCNKGKHRTGCLVGCLRKSQQWSLAYIFDEYRRFAGSKVRILDQQFIELF 158          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: D2W2E9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W2E9_NAEGR)

HSP 1 Score: 147 bits (370), Expect = 8.890e-43
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = 1
Query:   10 GVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            GVFRSGYP   NFPFL+++GL+S+  LCPE     ++ + +  G+R+   G+  N  PFV +P  A+RKA+  L + +N P+L+HC  GK +TG  +GCLR+ Q+W+L +IFDEY RFAG   + LD QFIEL+
Sbjct:    3 GVFRSGYPNKKNFPFLKKIGLKSICYLCPEQYAHNNMEFCRKVGIRIFQFGIEGNKEPFVHIPEDAIRKAITELLNPKNHPILIHCNKGKHRTGVLVGCLRKTQNWSLTSIFDEYRRFAGSKVRMLDQQFIELY 136          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A2K2BMS1_POPTR (Tyrosine-protein phosphatase domain-containing protein n=7 Tax=Saliceae TaxID=238069 RepID=A0A2K2BMS1_POPTR)

HSP 1 Score: 148 bits (374), Expect = 1.580e-42
Identity = 64/137 (46.72%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  G+FRSG+P + NF FL+ LGLRS++CLCPE     +  + KD G+R+   G+     PFV++P   +R+A+  + D +N P+L+HC  GK +TGC +GCLR+ Q W L +IFDEY RFA   A+  D +F+ELF
Sbjct:   55 VDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYTEATTEFLKDGGIRLYQFGIESYKEPFVNIPQDTIREALQVVLDVKNHPILIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAVAKARVSDQRFMELF 191          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A2P2K1U8_RHIMU (Uncharacterized protein MANES_12G069200 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K1U8_RHIMU)

HSP 1 Score: 148 bits (373), Expect = 1.780e-42
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  GVFRSG+P + NF FL+ LGLRS++CLCPES    ++ + K  G+++   G+     PFV++P   +R+A+  + D+RN PVLVHC  GK +TGC +GCLR+ Q W L +IFDEY RFA   A+  D +FIELF
Sbjct:   44 VDNGVFRSGFPDSANFSFLQTLGLRSIICLCPESYPEANMEFLKANGIKLFQFGIEGYKEPFVNIPDDTIREALKVVLDARNHPVLVHCKRGKHRTGCLVGCLRKLQRWYLSSIFDEYQRFAAAKARVSDQRFIELF 180          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A6J1JK62_CUCMA (probable tyrosine-protein phosphatase At1g05000 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JK62_CUCMA)

HSP 1 Score: 148 bits (373), Expect = 2.440e-42
Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  G+FRSG+P + NF FL+ LGLRS++CLCPES    S+ + K +G+R+   G+     PFV++P   +R+A+  + D RNRPVL+HC  GK +TGC +GC R+ Q W L ++F EY RFA   A+  D +FIELF
Sbjct:   58 VDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPESYPEASMDFLKSSGIRLFQLGIEGTKEPFVNIPDNTIREALKTILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELF 194          
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Match: A0A2K1XWL6_POPTR (Tyrosine-protein phosphatase domain-containing protein n=12 Tax=Saliceae TaxID=238069 RepID=A0A2K1XWL6_POPTR)

HSP 1 Score: 149 bits (375), Expect = 2.470e-42
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRMEMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAIGCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELF 411
            V  G+FRSG+P + NF FL+ LGLRS++CLCPE     +  + KD G+R+   G+     PFV++P   +R+A+  + D++N PVL+HC  GK +TGC +GCLR+ Q W L +IFDEY RFA   A+  D +F+ELF
Sbjct:   61 VDNGIFRSGFPDSANFAFLQTLGLRSIICLCPEPYPEATTEFLKDGGIRLYQFGIEGYKEPFVNIPEDTIREALKVVLDAKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARVSDQRFMELF 197          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1934.5727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV4_9PHAE2.340e-9091.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN6_9STRA3.530e-5459.12Tyrosine phosphatase family-domain-containing prot... [more]
A0A1Q3BVJ1_CEPFO3.600e-4348.18Y_phosphatase2 domain-containing protein n=1 Tax=C... [more]
A0A059CAJ9_EUCGR4.290e-4351.09Tyrosine-protein phosphatase domain-containing pro... [more]
L8H378_ACACA5.640e-4349.64Tyrosine specific protein phosphatase, putative n=... [more]
D2W2E9_NAEGR8.890e-4348.51Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A2K2BMS1_POPTR1.580e-4246.72Tyrosine-protein phosphatase domain-containing pro... [more]
A0A2P2K1U8_RHIMU1.780e-4249.64Uncharacterized protein MANES_12G069200 n=1 Tax=Rh... [more]
A0A6J1JK62_CUCMA2.440e-4248.18probable tyrosine-protein phosphatase At1g05000 n=... [more]
A0A2K1XWL6_POPTR2.470e-4247.45Tyrosine-protein phosphatase domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1934contigL-elsbetiae_contig1934:1656..2467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue3.2e-71
Seed eggNOG ortholog2880.D7FKK3
KEGG koko:K18045
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Ec32 ortholog descriptionProtein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic
Ec32 orthologEc-12_001770.1
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.3306-CDS-L-elsbetiae_contig1934:1655..18901622815802.3306-CDS-L-elsbetiae_contig1934:1655..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1934 1656..1890 +
1691683112.1547706-CDS-L-elsbetiae_contig1934:1655..18901691683112.1547706-CDS-L-elsbetiae_contig1934:1655..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1934 1656..1890 +
1622815802.3418696-CDS-L-elsbetiae_contig1934:2285..24671622815802.3418696-CDS-L-elsbetiae_contig1934:2285..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1934 2286..2467 +
1691683112.165206-CDS-L-elsbetiae_contig1934:2285..24671691683112.165206-CDS-L-elsbetiae_contig1934:2285..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1934 2286..2467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1934.5727.1prot_L-elsbetiae_contig1934.5727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1934 1656..2467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1934.5727.1

>prot_L-elsbetiae_contig1934.5727.1 ID=prot_L-elsbetiae_contig1934.5727.1|Name=mRNA_L-elsbetiae_contig1934.5727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
VSEGVFRSGYPIACNFPFLRRLGLRSVLCLCPESVLPGSLAWAKDAGVRM
EMCGLGENSPPFVSMPLAAMRKAVDYLSDSRNRPVLVHCLTGKTQTGCAI
GCLRRRQDWALGAIFDEYARFAGPSAKPLDMQFIELFK*
back to top

mRNA from alignment at L-elsbetiae_contig1934:1656..2467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1934.5727.1 ID=mRNA_L-elsbetiae_contig1934.5727.1|Name=mRNA_L-elsbetiae_contig1934.5727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=812bp|location=Sequence derived from alignment at L-elsbetiae_contig1934:1656..2467+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCGAGGGTGTTTTCCGAAGCGGTTACCCGATAGCTTGCAATTTCCC TTTCCTTCGTCGACTGGGGCTTCGGAGCGTACTCTGCCTGTGCCCTGAGA GTGTACTCCCTGGATCACTAGCCTGGGCGAAGGATGCAGGAGTGAGAATG GAGATGTGCGGTTTGGGAGAGAACAGCCCGCCATTCGTCTCGATGCCGCT CGCAGCGATGAGAAAAGCGGTGGACTATCTTTCTGGTGAGCGCACAAATA GCTTTTGTATGTTGATAGCTGCCGCTTCAGTACACGTAAAGAGCGCTGCA GGCCTTTTGTATCTAGGCGTAGACGCTACAACGCATCGATACCACAACAG TTACCTCCGCGTTCAGCAGTATCTGCAGGCCGCCGCTTGTCTACAACAAA CAAACCGTTTGTGTCTGGGGCTTCAAATGACCTGGCGTGTTCAGGCGATA GTTGCCGAAGCGTCCGATCTCGACTGCAGACCTTGGATATAATTTCCAGT AGTTTCCAACAGGGTAGGATACCTACTACCCTGCTGGCGGCGGCCACAGA AATGCAATGGCTCTGCCCCCGCACGATTCCAACGGCAGCCAGTTCCACCC CCCCCGCGCGCATGCGTGCAATGCCCGCAGATAGTAGAAATCGACCTGTG CTCGTGCACTGCCTCACTGGCAAGACTCAAACAGGATGCGCGATAGGCTG CCTGCGGCGAAGACAAGACTGGGCGTTGGGTGCTATCTTCGACGAGTATG CGCGCTTCGCGGGACCGTCGGCCAAGCCCTTAGACATGCAGTTTATTGAG CTGTTCAAGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1934:1656..2467+

>mRNA_L-elsbetiae_contig1934.5727.1 ID=mRNA_L-elsbetiae_contig1934.5727.1|Name=mRNA_L-elsbetiae_contig1934.5727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1934:1656..2467+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCGAGGGTGTTTTCCGAAGCGGTTACCCGATAGCTTGCAATTTCCC
TTTCCTTCGTCGACTGGGGCTTCGGAGCGTACTCTGCCTGTGCCCTGAGA
GTGTACTCCCTGGATCACTAGCCTGGGCGAAGGATGCAGGAGTGAGAATG
GAGATGTGCGGTTTGGGAGAGAACAGCCCGCCATTCGTCTCGATGCCGCT
CGCAGCGATGAGAAAAGCGGTGGACTATCTTTCTGGTGTCCGAGGGTGTT
TTCCGAAGCGGTTACCCGATAGCTTGCAATTTCCCTTTCCTTCGTCGACT
GGGGCTTCGGAGCGTACTCTGCCTGTGCCCTGAGAGTGTACTCCCTGGAT
CACTAGCCTGGGCGAAGGATGCAGGAGTGAGAATGGAGATGTGCGGTTTG
GGAGAGAACAGCCCGCCATTCGTCTCGATGCCGCTCGCAGCGATGAGAAA
AGCGGTGGACTATCTTTCTGATAGTAGAAATCGACCTGTGCTCGTGCACT
GCCTCACTGGCAAGACTCAAACAGGATGCGCGATAGGCTGCCTGCGGCGA
AGACAAGACTGGGCGTTGGGTGCTATCTTCGACGAGTATGCGCGCTTCGC
GGGACCGTCGGCCAAGCCCTTAGACATGCAGTTTATTGAGCTGTTCAAGT
GAATAGTAGAAATCGACCTGTGCTCGTGCACTGCCTCACTGGCAAGACTC
AAACAGGATGCGCGATAGGCTGCCTGCGGCGAAGACAAGACTGGGCGTTG
GGTGCTATCTTCGACGAGTATGCGCGCTTCGCGGGACCGTCGGCCAAGCC
CTTAGACATGCAGTTTATTGAGCTGTTCAAGTGA
back to top