mRNA_L-elsbetiae_contig19335.5726.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19335.5726.1
Unique NamemRNA_L-elsbetiae_contig19335.5726.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19335.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19335contigL-elsbetiae_contig19335:1123..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size768
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19335.5726.1prot_L-elsbetiae_contig19335.5726.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19335 1295..1678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.1863463-UTR-L-elsbetiae_contig19335:1122..12941622815802.1863463-UTR-L-elsbetiae_contig19335:1122..1294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19335 1123..1294 +
1691683112.0774908-UTR-L-elsbetiae_contig19335:1122..12941691683112.0774908-UTR-L-elsbetiae_contig19335:1122..1294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19335 1123..1294 +
1622815802.2109237-UTR-L-elsbetiae_contig19335:1678..18901622815802.2109237-UTR-L-elsbetiae_contig19335:1678..1890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19335 1679..1890 +
1691683112.096949-UTR-L-elsbetiae_contig19335:1678..18901691683112.096949-UTR-L-elsbetiae_contig19335:1678..1890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19335 1679..1890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.1970832-CDS-L-elsbetiae_contig19335:1294..16781622815802.1970832-CDS-L-elsbetiae_contig19335:1294..1678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19335 1295..1678 +
1691683112.0889807-CDS-L-elsbetiae_contig19335:1294..16781691683112.0889807-CDS-L-elsbetiae_contig19335:1294..1678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19335 1295..1678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19335.5726.1

>prot_L-elsbetiae_contig19335.5726.1 ID=prot_L-elsbetiae_contig19335.5726.1|Name=mRNA_L-elsbetiae_contig19335.5726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MSIGHLSAAQMSSPRGNTALLLLPGALSLFCRVPGPPPCAREWITLLSCL
RPSVSKPLHFEDKWPLNNGTTYRPCLKKRPAAGGFPKFARARAFFLTRIG
PEMASKSVKRHVNGHEHTHKKKIKNNI*
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mRNA from alignment at L-elsbetiae_contig19335:1123..1890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19335.5726.1 ID=mRNA_L-elsbetiae_contig19335.5726.1|Name=mRNA_L-elsbetiae_contig19335.5726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig19335:1123..1890+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCAAAACCTGACGCGAACGCCCTTTGTGATGCATAAATATACAGGGA
AAAGCCGCGAGCCGTGGAGTAGAAGCTCCCTGCTTGTGTCTCTGCCGATG
GCCAAAGTTAGACCCGAGTGCGCCTTGTTGAAAAAATGAACCAACCAACC
GAGGTGTACGGGTTGGCATCGCATGTCTATAGGACATCTCTCTGCTGCTC
AGATGTCTTCACCACGAGGAAACACAGCTCTACTACTGCTGCCAGGAGCT
CTCTCTCTCTTCTGCCGTGTGCCTGGGCCACCACCCTGTGCCAGGGAGTG
GATAACACTTCTCAGCTGCTTGCGTCCAAGTGTCTCTAAGCCGTTGCATT
TTGAGGACAAATGGCCCTTGAACAACGGAACTACATATAGGCCTTGTTTA
AAGAAAAGACCGGCGGCAGGGGGGTTTCCAAAATTTGCCCGAGCGCGTGC
ATTTTTCCTTACTCGAATCGGTCCCGAAATGGCTTCTAAATCGGTGAAAA
GACATGTGAATGGACACGAACACACGCACAAGAAAAAAATCAAGAACAAT
ATTTAATTCATGGGTCTCAGCAGCAGAGGGTGTTATTTAACATGCAACCG
TCGTTTGATAAGATTGTTTTTTTCTGGCGCTGAGTGACTCCTCGCCATCC
TGTTAAGATATCCGTTCAATAAATTACTGTGTAGTTTGCGAATAATGAGC
CGCACACCCAACCCAACCCAACCAGTACCGGCTCAATACCTTGCAGTAGT
CTGACCAACCCACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19335:1123..1890+

>mRNA_L-elsbetiae_contig19335.5726.1 ID=mRNA_L-elsbetiae_contig19335.5726.1|Name=mRNA_L-elsbetiae_contig19335.5726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig19335:1123..1890+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTATAGGACATCTCTCTGCTGCTCAGATGTCTTCACCACGAGGAAA
CACAGCTCTACTACTGCTGCCAGGAGCTCTCTCTCTCTTCTGCCGTGTGC
CTGGGCCACCACCCTGTGCCAGGGAGTGGATAACACTTCTCAGCTGCTTG
CGTCCAAGTGTCTCTAAGCCGTTGCATTTTGAGGACAAATGGCCCTTGAA
CAACGGAACTACATATAGGCCTTGTTTAAAGAAAAGACCGGCGGCAGGGG
GGTTTCCAAAATTTGCCCGAGCGCGTGCATTTTTCCTTACTCGAATCGGT
CCCGAAATGGCTTCTAAATCGGTGAAAAGACATGTGAATGGACACGAACA
CACGCACAAGAAAAAAATCAAGAACAATATTTAAATGTCTATAGGACATC
TCTCTGCTGCTCAGATGTCTTCACCACGAGGAAACACAGCTCTACTACTG
CTGCCAGGAGCTCTCTCTCTCTTCTGCCGTGTGCCTGGGCCACCACCCTG
TGCCAGGGAGTGGATAACACTTCTCAGCTGCTTGCGTCCAAGTGTCTCTA
AGCCGTTGCATTTTGAGGACAAATGGCCCTTGAACAACGGAACTACATAT
AGGCCTTGTTTAAAGAAAAGACCGGCGGCAGGGGGGTTTCCAAAATTTGC
CCGAGCGCGTGCATTTTTCCTTACTCGAATCGGTCCCGAAATGGCTTCTA
AATCGGTGAAAAGACATGTGAATGGACACGAACACACGCACAAGAAAAAA
ATCAAGAACAATATTTAA
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