mRNA_L-elsbetiae_contig19334.5725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19334.5725.1
Unique NamemRNA_L-elsbetiae_contig19334.5725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19334.5725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19334contigL-elsbetiae_contig19334:114..1625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size464
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19334.5725.1prot_L-elsbetiae_contig19334.5725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19334 202..1625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.104106-UTR-L-elsbetiae_contig19334:113..2011622815802.104106-UTR-L-elsbetiae_contig19334:113..201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19334 114..201 -
1691683112.0355637-UTR-L-elsbetiae_contig19334:113..2011691683112.0355637-UTR-L-elsbetiae_contig19334:113..201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19334 114..201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.1156785-CDS-L-elsbetiae_contig19334:201..2331622815802.1156785-CDS-L-elsbetiae_contig19334:201..233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 202..233 -
1691683112.0468295-CDS-L-elsbetiae_contig19334:201..2331691683112.0468295-CDS-L-elsbetiae_contig19334:201..233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 202..233 -
1622815802.1262739-CDS-L-elsbetiae_contig19334:525..6991622815802.1262739-CDS-L-elsbetiae_contig19334:525..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 526..699 -
1691683112.0599146-CDS-L-elsbetiae_contig19334:525..6991691683112.0599146-CDS-L-elsbetiae_contig19334:525..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 526..699 -
1622815802.1448247-CDS-L-elsbetiae_contig19334:1456..16251622815802.1448247-CDS-L-elsbetiae_contig19334:1456..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 1457..1625 -
1691683112.0686636-CDS-L-elsbetiae_contig19334:1456..16251691683112.0686636-CDS-L-elsbetiae_contig19334:1456..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19334 1457..1625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19334.5725.1

>prot_L-elsbetiae_contig19334.5725.1 ID=prot_L-elsbetiae_contig19334.5725.1|Name=mRNA_L-elsbetiae_contig19334.5725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
DAPRAQQRGQRRRRAFRRWCHRPRRLQPSDRLHGLHPGQDSSLRRGRKSA
QGVPGRSSVPLYTISPRASSTSQTPRCLTRSTPRLGTAPRPTPTPTPSAR
ATAVPSASKGSSIFGDVFGDFLPR*
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mRNA from alignment at L-elsbetiae_contig19334:114..1625-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19334.5725.1 ID=mRNA_L-elsbetiae_contig19334.5725.1|Name=mRNA_L-elsbetiae_contig19334.5725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig19334:114..1625- (Laminarionema elsbetiae ELsaHSoW15)
GATGCACCGCGAGCGCAGCAGCGCGGGCAGAGACGACGACGAGCCTTCAG
AAGATGGTGCCACCGACCCCGCAGGCTTCAACCGAGCGACCGCCTTCACG
GACTCCATCCAGGGCAAGACTCTTCCCTTCGGCGGGGGCGGAAAAGTGCA
CAAGGAGTTCCTGGCCGAAGTAAGTTTATTTAATGTGTGCTGTCTTTCCC
CCTGTAGCCCTATAGAGAATTATTTGACATGCCTTCTTTTTTGGTACGAG
CCAAGTTTTTTCTACACTTTTGCTCGCCGCCTGCGACCACATCTTACCGA
AATGTTGTTGAACAAACACATGAGTACCACGGGTGGGTTTGGGAATGTTT
TTTTCGCGGTTGAAGTTTGGCACACCCGTACTTGACTGCGGGCGTCTTCT
ACCAGCATTGTGCATGTGTGTGTGTCCTTCCCATCTATTTTGGCCACAGT
CCCCCCAAGTGGAGACGTGTAAAACACATTGCGGTGTACGTAGAGGTACT
ACACTTTGCAGTGCATTTGTCTGTACAACTAGAACCAAACGGAGTCACAC
AGGGGGAGGTGAACACGGGAGCTCTTTATTCTTTTTTGTTTTATGTTTTT
GCCCCACCTTCCTCCTGCGGTTAATATTGTGCATGCAACCCTCTAATTGT
CCAAGTTCTTAGTTTTCGTTGAAACTATTTGTCCAGGACACACTTAGTCG
CGCACATTTTTTGCAAAATAAGGTGCCAAGCTGTGCAGTGATGTGACAGT
CTTGCGAAAGTTCTAATGTTCGTTCCGGCACCCCCCACTCGTGACAGTAC
CCTTTCGCAACCTAGCATGCCACCTTCGCATAACTACTTTGGATGGCCCG
TCTCATTCATGCCGATCTCTCCGTTTGTCTTCTCCGCTTATATCGTTCCG
CCATCTCGACAACCATGCCCTTTCAGGTTCCGTTCCACTATACACAATTT
CGCCAAGGGCGTCCTCGACGTCGCAAACTCCGAGGTGTTTGACACGATCA
ACGCCGAGACTGGGGACGGCGCCGAGGCCAACGCCAACGCCAACGCCGTC
GGCGAGAGCGACGGCAGTACCTTCAGCCTCGAAGGGTAGCTCAATCTTCG
GTGAGATGGGTATTCATCTATTCAACCCTTTTTTGACACTCTGGGTAAGA
CAACGACGAATGCGTGTTTTTAGTTTTTAGGGCGTTGCATGGTGTACTAC
GTACTTGCCGTTATTGAGGAACACGATCATTGACTCTTGGTGGCTTTTTC
AGATGTACGGTGCATCGAATCGTACAAACATTTTCTTGGATGCATGCAAC
CACATACATTGTTCAACCCCCCGATCCTGCCCGACGTTCTAACGCCCGCT
TTATCCTCTTCTTTTTGATCTCGTCGGTACGTTTTGCCCAAGGTGATGTC
TTTGGCGATTTTCTTCCCCGTTGACTGCCCCGTCGATGCAGTTCGACAAC
TTCTGCCGCTGCACAAGCTTCCTCTCAAACTTCAGCCACAAAGCGAGTGG
ACGCATTGTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19334:114..1625-

>mRNA_L-elsbetiae_contig19334.5725.1 ID=mRNA_L-elsbetiae_contig19334.5725.1|Name=mRNA_L-elsbetiae_contig19334.5725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig19334:114..1625- (Laminarionema elsbetiae ELsaHSoW15)
GATGCACCGCGAGCGCAGCAGCGCGGGCAGAGACGACGACGAGCCTTCAG
AAGATGGTGCCACCGACCCCGCAGGCTTCAACCGAGCGACCGCCTTCACG
GACTCCATCCAGGGCAAGACTCTTCCCTTCGGCGGGGGCGGAAAAGTGCA
CAAGGAGTTCCTGGCCGAAGATGCACCGCGAGCGCAGCAGCGCGGGCAGA
GACGACGACGAGCCTTCAGAAGATGGTGCCACCGACCCCGCAGGCTTCAA
CCGAGCGACCGCCTTCACGGACTCCATCCAGGGCAAGACTCTTCCCTTCG
GCGGGGGCGGAAAAGTGCACAAGGAGTTCCTGGCCGAAGTTCCGTTCCAC
TATACACAATTTCGCCAAGGGCGTCCTCGACGTCGCAAACTCCGAGGTGT
TTGACACGATCAACGCCGAGACTGGGGACGGCGCCGAGGCCAACGCCAAC
GCCAACGCCGTCGGCGAGAGCGACGGCAGTACCTTCAGCCTCGAAGGGTA
GCTCAATCTTCGGTTCCGTTCCACTATACACAATTTCGCCAAGGGCGTCC
TCGACGTCGCAAACTCCGAGGTGTTTGACACGATCAACGCCGAGACTGGG
GACGGCGCCGAGGCCAACGCCAACGCCAACGCCGTCGGCGAGAGCGACGG
CAGTACCTTCAGCCTCGAAGGGTAGCTCAATCTTCGGTGATGTCTTTGGC
GATTTTCTTCCCCGTTGAGTGATGTCTTTGGCGATTTTCTTCCCCGTTGA
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