mRNA_L-elsbetiae_contig19312.5721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19312.5721.1
Unique NamemRNA_L-elsbetiae_contig19312.5721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19312.5721.1 vs. uniprot
Match: A0A6H5K3K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.470e-7
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  805 FDRTGKASAQLAVNAFVVPDGVMNHDILLGTDSWRRFPSREYTDVGDDICLLRLSTEPAPSPLKQAD 1005
            F    + +A+LA NA+VV +GVM+H++LLGTDSW RFP RE +D  +    LRL T   P+     D
Sbjct:  206 FSIVRQPTAKLAANAYVVREGVMSHEVLLGTDSWARFPVRECSDKREGETTLRLKTSLPPTQTPTVD 272
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19312.5721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3K5_9PHAE3.470e-746.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19312contigL-elsbetiae_contig19312:1809..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1019
Cds size1017
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815801.7706368-CDS-L-elsbetiae_contig19312:1808..28251622815801.7706368-CDS-L-elsbetiae_contig19312:1808..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19312 1809..2825 +
1691683111.8251307-CDS-L-elsbetiae_contig19312:1808..28251691683111.8251307-CDS-L-elsbetiae_contig19312:1808..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19312 1809..2825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19312.5721.1prot_L-elsbetiae_contig19312.5721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19312 1809..2825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19312.5721.1

>prot_L-elsbetiae_contig19312.5721.1 ID=prot_L-elsbetiae_contig19312.5721.1|Name=mRNA_L-elsbetiae_contig19312.5721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
VDGNCLERHVQNTGPRSMASTASALPVIVEESQSTAAAELRSTDSCKRGV
TLRRGSGVEETKTCPPLPSPLSAPLPSKIENKSKEKNKNPCSPPSSPVGP
VLTDRTQINMVRPARVNKKNNRQEKSPKHKGFSKRKEISVITSEVGVPSL
PSWFHAKPWLHARSCSDPPDFLAEYQQFKGGVAKLQRSSQVASVNVFAGP
HARLKHKCNALIDTGSCQSFISERVQNAMVAAGAASLAGFRVARKQEWSG
FNRQSLRTNQVGRLTVEFFDRTGKASAQLAVNAFVVPDGVMNHDILLGTD
SWRRFPSREYTDVGDDICLLRLSTEPAPSPLKQADLMPS
back to top

mRNA from alignment at L-elsbetiae_contig19312:1809..2827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19312.5721.1 ID=mRNA_L-elsbetiae_contig19312.5721.1|Name=mRNA_L-elsbetiae_contig19312.5721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1019bp|location=Sequence derived from alignment at L-elsbetiae_contig19312:1809..2827+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGATGGCAACTGTCTGGAGCGCCATGTACAAAATACGGGACCCCGTAG
CATGGCGTCTACAGCGTCTGCGCTCCCAGTAATCGTAGAGGAGTCGCAAT
CCACTGCTGCCGCTGAACTAAGAAGCACAGATAGCTGTAAGAGGGGGGTA
ACTTTGCGACGAGGAAGCGGGGTGGAGGAGACAAAAACTTGCCCTCCACT
GCCTTCGCCGTTGTCAGCCCCGTTGCCGTCAAAAATAGAAAATAAGTCAA
AAGAAAAAAATAAAAATCCGTGCTCGCCGCCGTCTTCGCCGGTTGGCCCC
GTGCTGACTGACCGAACTCAAATCAACATGGTACGGCCCGCACGCGTAAA
TAAAAAAAATAACCGACAAGAGAAATCGCCGAAACACAAAGGATTTTCAA
AGCGTAAAGAAATTTCCGTGATCACCTCAGAAGTGGGCGTTCCTTCCCTC
CCTTCGTGGTTCCATGCGAAGCCATGGCTGCACGCCCGATCGTGTAGCGA
TCCGCCTGATTTTTTAGCCGAGTATCAGCAGTTTAAAGGAGGAGTAGCCA
AACTCCAGCGATCCTCCCAGGTGGCCAGTGTAAACGTTTTTGCGGGGCCA
CATGCTCGGTTGAAACATAAATGTAATGCGTTAATTGACACGGGCTCGTG
CCAATCGTTCATCAGCGAGCGAGTTCAAAATGCCATGGTAGCCGCGGGTG
CCGCGTCTCTCGCTGGTTTTCGAGTAGCCCGCAAGCAAGAATGGTCGGGG
TTCAACAGGCAGTCCCTGCGTACGAATCAAGTAGGAAGACTAACTGTGGA
ATTTTTCGATAGAACCGGTAAAGCGAGCGCCCAGCTTGCCGTCAACGCCT
TCGTCGTTCCCGACGGGGTGATGAACCATGACATTTTACTGGGTACCGAT
AGCTGGCGACGCTTCCCCAGCCGAGAGTATACAGATGTTGGAGACGATAT
TTGTTTGTTGCGATTGAGCACGGAGCCGGCACCGTCCCCTCTCAAGCAGG
CGGATCTGATGCCCTCCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19312:1809..2827+

>mRNA_L-elsbetiae_contig19312.5721.1 ID=mRNA_L-elsbetiae_contig19312.5721.1|Name=mRNA_L-elsbetiae_contig19312.5721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig19312:1809..2827+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGATGGCAACTGTCTGGAGCGCCATGTACAAAATACGGGACCCCGTAG
CATGGCGTCTACAGCGTCTGCGCTCCCAGTAATCGTAGAGGAGTCGCAAT
CCACTGCTGCCGCTGAACTAAGAAGCACAGATAGCTGTAAGAGGGGGGTA
ACTTTGCGACGAGGAAGCGGGGTGGAGGAGACAAAAACTTGCCCTCCACT
GCCTTCGCCGTTGTCAGCCCCGTTGCCGTCAAAAATAGAAAATAAGTCAA
AAGAAAAAAATAAAAATCCGTGCTCGCCGCCGTCTTCGCCGGTTGGCCCC
GTGCTGACTGACCGAACTCAAATCAACATGGTACGGCCCGCACGCGTAAA
TAAAAAAAATAACCGACAAGAGAAATCGCCGAAACACAAAGGATTTTCAA
AGCGTAAAGAAATTTCCGTGATCACCTCAGAAGTGGGCGTTCCTTCCCTC
CCTTCGTGGTTCCATGCGAAGCCATGGCTGCACGCCCGATCGTGTAGCGA
TCCGCCTGATTTTTTAGCCGAGTATCAGCAGTTTAAAGGAGGAGTAGCCA
AACTCCAGCGATCCTCCCAGGTGGCCAGTGTAAACGTTTTTGCGGGGCCA
CATGCTCGGTTGAAACATAAATGTAATGCGTTAATTGACACGGGCTCGTG
CCAATCGTTCATCAGCGAGCGAGTTCAAAATGCCATGGTAGCCGCGGGTG
CCGCGTCTCTCGCTGGTTTTCGAGTAGCCCGCAAGCAAGAATGGTCGGGG
TTCAACAGGCAGTCCCTGCGTACGAATCAAGTAGGAAGACTAACTGTGGA
ATTTTTCGATAGAACCGGTAAAGCGAGCGCCCAGCTTGCCGTCAACGCCT
TCGTCGTTCCCGACGGGGTGATGAACCATGACATTTTACTGGGTACCGAT
AGCTGGCGACGCTTCCCCAGCCGAGAGTATACAGATGTTGGAGACGATAT
TTGTTTGTTGCGATTGAGCACGGAGCCGGCACCGTCCCCTCTCAAGCAGG
CGGATCTGATGCCCTCCGTTGATGGCAACTGTCTGGAGCGCCATGTACAA
AATACGGGACCCCGTAGCATGGCGTCTACAGCGTCTGCGCTCCCAGTAAT
CGTAGAGGAGTCGCAATCCACTGCTGCCGCTGAACTAAGAAGCACAGATA
GCTGTAAGAGGGGGGTAACTTTGCGACGAGGAAGCGGGGTGGAGGAGACA
AAAACTTGCCCTCCACTGCCTTCGCCGTTGTCAGCCCCGTTGCCGTCAAA
AATAGAAAATAAGTCAAAAGAAAAAAATAAAAATCCGTGCTCGCCGCCGT
CTTCGCCGGTTGGCCCCGTGCTGACTGACCGAACTCAAATCAACATGGTA
CGGCCCGCACGCGTAAATAAAAAAAATAACCGACAAGAGAAATCGCCGAA
ACACAAAGGATTTTCAAAGCGTAAAGAAATTTCCGTGATCACCTCAGAAG
TGGGCGTTCCTTCCCTCCCTTCGTGGTTCCATGCGAAGCCATGGCTGCAC
GCCCGATCGTGTAGCGATCCGCCTGATTTTTTAGCCGAGTATCAGCAGTT
TAAAGGAGGAGTAGCCAAACTCCAGCGATCCTCCCAGGTGGCCAGTGTAA
ACGTTTTTGCGGGGCCACATGCTCGGTTGAAACATAAATGTAATGCGTTA
ATTGACACGGGCTCGTGCCAATCGTTCATCAGCGAGCGAGTTCAAAATGC
CATGGTAGCCGCGGGTGCCGCGTCTCTCGCTGGTTTTCGAGTAGCCCGCA
AGCAAGAATGGTCGGGGTTCAACAGGCAGTCCCTGCGTACGAATCAAGTA
GGAAGACTAACTGTGGAATTTTTCGATAGAACCGGTAAAGCGAGCGCCCA
GCTTGCCGTCAACGCCTTCGTCGTTCCCGACGGGGTGATGAACCATGACA
TTTTACTGGGTACCGATAGCTGGCGACGCTTCCCCAGCCGAGAGTATACA
GATGTTGGAGACGATATTTGTTTGTTGCGATTGAGCACGGAGCCGGCACC
GTCCCCTCTCAAGCAGGCGGATCTGATGCCCTCC
back to top