mRNA_L-elsbetiae_contig193.5712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig193.5712.1
Unique NamemRNA_L-elsbetiae_contig193.5712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig193.5712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig193contigL-elsbetiae_contig193:22516..23269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.2598307-CDS-L-elsbetiae_contig193:22515..227151622815800.2598307-CDS-L-elsbetiae_contig193:22515..22715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 22516..22715 +
1691683110.7764816-CDS-L-elsbetiae_contig193:22515..227151691683110.7764816-CDS-L-elsbetiae_contig193:22515..22715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 22516..22715 +
1622815800.2736888-CDS-L-elsbetiae_contig193:23084..232681622815800.2736888-CDS-L-elsbetiae_contig193:23084..23268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 23085..23268 +
1691683110.7892046-CDS-L-elsbetiae_contig193:23084..232681691683110.7892046-CDS-L-elsbetiae_contig193:23084..23268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 23085..23268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig193.5712.1prot_L-elsbetiae_contig193.5712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig193 22516..23268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig193.5712.1

>prot_L-elsbetiae_contig193.5712.1 ID=prot_L-elsbetiae_contig193.5712.1|Name=mRNA_L-elsbetiae_contig193.5712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
GHSDLFGGEKDCSRGAAACDIEGDGGGAGDIGEPAVGRRKALSRLTLLTG
VDEGMDCIKEEPEQLDISSPTSAETNNAKARASWSGPRVTSDSSTSHCGN
SHDRAGNSSICMGYFESSDAESGGHERE
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mRNA from alignment at L-elsbetiae_contig193:22516..23269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig193.5712.1 ID=mRNA_L-elsbetiae_contig193.5712.1|Name=mRNA_L-elsbetiae_contig193.5712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=754bp|location=Sequence derived from alignment at L-elsbetiae_contig193:22516..23269+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCACTCTGACTTGTTTGGGGGGGAAAAGGACTGCTCGAGGGGTGCGGC
AGCGTGCGACATCGAAGGCGATGGAGGCGGTGCCGGCGATATTGGTGAAC
CAGCAGTGGGGAGGAGGAAGGCGTTGTCGCGGCTTACGTTGCTCACCGGG
GTGGATGAAGGCATGGACTGTATTAAAGAGGAGCCGGAACAGCTGGACAT
GTGAGATTTCGAAGTGCATTTCACAAAACAATATTCGCAAGCCTCTGTTA
TGACCTTGCGCGCTTTGAAATCACAAACTCGCTTGGACGAAGTTGCTCGG
TCGGCATTCGCATATTTCTAATGCTTCAATGCCATTCTTGATGTTCCTAC
TACTCTCGTCATTGGGTGCTGTGGTTGTTGTACATGTACCGCTGCTGTTG
CGGTTGCCGTTGTCACGGTTTGTTGATTAATATCCTTCTCCGTTGTTGGC
ATTATTCGAGTAATCCACTTTCAAGCCACCCTCCACGTTTGTTGTCCGGC
CCGAGAGCGGAAACATCTGGCGTGTGGTACCAAGGACGAGTTCCGGTTCG
TTCGCGCGTGATCTCGCAGATCATCCCCCACCTCCGCCGAGACGAACAAC
GCCAAAGCCAGGGCCAGCTGGAGTGGTCCGCGCGTCACCTCCGACAGCAG
CACGAGCCACTGTGGTAACAGTCACGACCGAGCGGGGAACAGCTCGATTT
GTATGGGCTACTTCGAGAGCTCAGATGCCGAGAGCGGCGGCCACGAGAGG
GAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig193:22516..23269+

>mRNA_L-elsbetiae_contig193.5712.1 ID=mRNA_L-elsbetiae_contig193.5712.1|Name=mRNA_L-elsbetiae_contig193.5712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig193:22516..23269+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCACTCTGACTTGTTTGGGGGGGAAAAGGACTGCTCGAGGGGTGCGGC
AGCGTGCGACATCGAAGGCGATGGAGGCGGTGCCGGCGATATTGGTGAAC
CAGCAGTGGGGAGGAGGAAGGCGTTGTCGCGGCTTACGTTGCTCACCGGG
GTGGATGAAGGCATGGACTGTATTAAAGAGGAGCCGGAACAGCTGGACAT
GGCCACTCTGACTTGTTTGGGGGGGAAAAGGACTGCTCGAGGGGTGCGGC
AGCGTGCGACATCGAAGGCGATGGAGGCGGTGCCGGCGATATTGGTGAAC
CAGCAGTGGGGAGGAGGAAGGCGTTGTCGCGGCTTACGTTGCTCACCGGG
GTGGATGAAGGCATGGACTGTATTAAAGAGGAGCCGGAACAGCTGGACAT
ATCATCCCCCACCTCCGCCGAGACGAACAACGCCAAAGCCAGGGCCAGCT
GGAGTGGTCCGCGCGTCACCTCCGACAGCAGCACGAGCCACTGTGGTAAC
AGTCACGACCGAGCGGGGAACAGCTCGATTTGTATGGGCTACTTCGAGAG
CTCAGATGCCGAGAGCGGCGGCCACGAGAGGGAGATCATCCCCCACCTCC
GCCGAGACGAACAACGCCAAAGCCAGGGCCAGCTGGAGTGGTCCGCGCGT
CACCTCCGACAGCAGCACGAGCCACTGTGGTAACAGTCACGACCGAGCGG
GGAACAGCTCGATTTGTATGGGCTACTTCGAGAGCTCAGATGCCGAGAGC
GGCGGCCACGAGAGGGAG
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