mRNA_L-elsbetiae_contig1929.5708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1929.5708.1
Unique NamemRNA_L-elsbetiae_contig1929.5708.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1929.5708.1 vs. uniprot
Match: D7FWE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.220e-22
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 QVIAEVQLYHEQARLIVAGKLLAGVDLYLESGQHAGRAEVKAALALLGGELKASFDELRQRAAECSSTLDDWHS 222
            ++IAEVQL  EQARL+VAG+LLA VD YL SGQHAGR EVK A ALL GELK  FDE+RQRAAEC S+LDDW S
Sbjct:   19 ELIAEVQLCREQARLLVAGRLLAAVDRYLASGQHAGRQEVKEAHALLAGELKPLFDEVRQRAAECQSSLDDWQS 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1929.5708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWE7_ECTSI3.220e-2274.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1929contigL-elsbetiae_contig1929:12529..13721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4.2e-21
Seed eggNOG ortholog2880.D7FWE7
Preferred namePCTP
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005543,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008289,GO:0008525,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0010876,GO:0015711,GO:0015748,GO:0015914,GO:0016125,GO:0019637,GO:0031210,GO:0033036,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046470,GO:0046474,GO:0046486,GO:0050997,GO:0051179,GO:0051234,GO:0070405,GO:0071702,GO:0071704,GO:0090407,GO:0097164,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902652
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size908
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1929.5708.1prot_L-elsbetiae_contig1929.5708.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1929 12529..13071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.1920586-CDS-L-elsbetiae_contig1929:12528..127501622815800.1920586-CDS-L-elsbetiae_contig1929:12528..12750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1929 12529..12750 +
1691683110.7371626-CDS-L-elsbetiae_contig1929:12528..127501691683110.7371626-CDS-L-elsbetiae_contig1929:12528..12750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1929 12529..12750 +
1622815800.2057242-CDS-L-elsbetiae_contig1929:13035..130711622815800.2057242-CDS-L-elsbetiae_contig1929:13035..13071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1929 13036..13071 +
1691683110.7523353-CDS-L-elsbetiae_contig1929:13035..130711691683110.7523353-CDS-L-elsbetiae_contig1929:13035..13071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1929 13036..13071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.2193344-UTR-L-elsbetiae_contig1929:13071..137211622815800.2193344-UTR-L-elsbetiae_contig1929:13071..13721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1929 13072..13721 +
1691683110.7638996-UTR-L-elsbetiae_contig1929:13071..137211691683110.7638996-UTR-L-elsbetiae_contig1929:13071..13721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1929 13072..13721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1929.5708.1

>prot_L-elsbetiae_contig1929.5708.1 ID=prot_L-elsbetiae_contig1929.5708.1|Name=mRNA_L-elsbetiae_contig1929.5708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
QVIAEVQLYHEQARLIVAGKLLAGVDLYLESGQHAGRAEVKAALALLGGE
LKASFDELRQRAAECSSTLDDWHSAQVGRQPTQQQ*
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mRNA from alignment at L-elsbetiae_contig1929:12529..13721+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1929.5708.1 ID=mRNA_L-elsbetiae_contig1929.5708.1|Name=mRNA_L-elsbetiae_contig1929.5708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1193bp|location=Sequence derived from alignment at L-elsbetiae_contig1929:12529..13721+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTATCGCAGAGGTTCAGCTGTATCACGAGCAAGCGCGACTGATTGT
CGCCGGCAAGTTGTTAGCAGGTGTCGACCTGTACTTGGAATCTGGGCAAC
ATGCTGGAAGAGCGGAGGTGAAGGCAGCTCTTGCTCTGCTGGGAGGGGAG
CTAAAGGCGTCGTTTGACGAGCTCCGGCAAAGGGCAGCCGAATGCTCGTC
GACACTCGACGACTGGCATTCGGTTAGTGCCAAAATGCATTCAATATTGT
TTGCGTGTCCCATGCGTTCGCACTCATTCACATGGTACAGCCACCGTTTT
GGTCTCTCGTGTTCGGGATAGACTGGCGTCGAGCCTGCTGTCATGGTTGT
TCACGCATGTTGTTCATATCTTACAAAGTAGAGCGGTTTTGCGTCCCATC
TGCGAACAGACATTTCCAGGCGAACGAAGGTAGCTGTTGGTAACACCCTG
ACGCAAAAATCCACCGCCCACTGACGTGTGTGTATACTCCATTGAGGTGG
TTCTCAGGCCCAGGTAGGGAGACAGCCAACCCAGCAACAGTAGCGGCATA
GCAATTGCTCCGATCCGAGTGGCACCCACAGATGTCACATCGTAACAGCA
GTTCACCTCCTGTACATGGCAACGCAAGGCGAAGACGCGGTTGGATAATG
TCGCAAATACGGCGTACCAGAATGGGTAACAAATATCGATAGCGCCCGAT
CTCTCTTCAACGTTAGAGATGGATCCGCATTTGGACAGCTCACAGGTGCA
GGTGTGGAGGAGAGACCGGGAACACACCAGTCAAATGTAAAACAAGCTCT
TGTGTCCTTTCAATTTGCAATAGTAGGGCCCCCGAGGGCGATGGAGCTTT
GTATTCCAGCTTTGTAGACTTTGACAAGTGTCAAGACCGCAGGAACGCGA
AAGGGTTCCACTTGTGTGGTGATTCGATTTTTTTGTTTTTGTTCCCGATC
TATTCTGGCCTACATATCTTGTCTGCCTTCTCCCCTTCGGTGCACACACA
CATTTTTTGGTGTAGGTGCACTTACGCTTGCGGCGTATGCCCCCGAACAG
CTGACTAGACGTACCACTCGGAGTCACGCCCACACCATTTTTTCCTGCGG
TGCTTGCCTTGATTTTCTTCGCGAGAAGAGTTCAGTCGCCCCTTTCCCTC
GTCACCGGTGAAATCGAAGTTTGTGTCCTCACGAGCTTTTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1929:12529..13721+

>mRNA_L-elsbetiae_contig1929.5708.1 ID=mRNA_L-elsbetiae_contig1929.5708.1|Name=mRNA_L-elsbetiae_contig1929.5708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig1929:12529..13721+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTATCGCAGAGGTTCAGCTGTATCACGAGCAAGCGCGACTGATTGT
CGCCGGCAAGTTGTTAGCAGGTGTCGACCTGTACTTGGAATCTGGGCAAC
ATGCTGGAAGAGCGGAGGTGAAGGCAGCTCTTGCTCTGCTGGGAGGGGAG
CTAAAGGCGTCGTTTGACGAGCTCCGGCAAAGGGCAGCCGAATGCTCGTC
GACACTCGACGACTGGCATTCGCAGGTTATCGCAGAGGTTCAGCTGTATC
ACGAGCAAGCGCGACTGATTGTCGCCGGCAAGTTGTTAGCAGGTGTCGAC
CTGTACTTGGAATCTGGGCAACATGCTGGAAGAGCGGAGGTGAAGGCAGC
TCTTGCTCTGCTGGGAGGGGAGCTAAAGGCGTCGTTTGACGAGCTCCGGC
AAAGGGCAGCCGAATGCTCGTCGACACTCGACGACTGGCATTCGGCCCAG
GTAGGGAGACAGCCAACCCAGCAACAGTAGGCCCAGGTAGGGAGACAGCC
AACCCAGCAACAGTAG
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