mRNA_L-elsbetiae_contig1928.5705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1928.5705.1
Unique NamemRNA_L-elsbetiae_contig1928.5705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1928.5705.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.650e-10
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 CDLTDDDVEDLATCLDDAGREAIGKLYLEENALTTLPEGLLAGLTGLTAL 153
            C +TD D +DLA+CL+ AG EAI  L+L EN LTTLPEG+   LTGL  L
Sbjct:   46 CGITDADFDDLASCLEAAGPEAITTLFLYENELTTLPEGIFGSLTGLQML 95
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BLAST of mRNA_L-elsbetiae_contig1928.5705.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.490e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 CDLTDDDVEDLATCLDDAGREAIGKLYLEENALTTLPEGLLAGLTGL 144
            C +TD D +DLA+CL+DAG EAI  L L +N LTTLPEG+  GLT L
Sbjct:  162 CGITDADFDDLASCLEDAGPEAITYLSLSQNELTTLPEGIFGGLTAL 208
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BLAST of mRNA_L-elsbetiae_contig1928.5705.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 8.340e-9
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 CDLTDDDVE--DLATCLDDAGREAIGKLYLEENALTTLPEGLLAGLTGLTA 150
            C +TD+DV+  DLA+CLD+AGRE + +L+L  NALTTLP G+  GLT L A
Sbjct:   86 CGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVLDA 136
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BLAST of mRNA_L-elsbetiae_contig1928.5705.1 vs. uniprot
Match: D8LR92_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 CDLTDDDVEDLATCLDDAGREAIGKLYLEENALTTLPEGLLAGLTGLTAL 153
            C +TDDD+ED+ TCLD  GR ++  LY+  N LTT+PEGL  GL  L  L
Sbjct:  203 CGITDDDLEDVETCLDVLGRGSMTALYVRFNYLTTIPEGLFDGLGHLEKL 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1928.5705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KI88_9PHAE1.650e-1060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY3_9PHAE2.490e-961.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL57_ECTSI8.340e-958.82Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D8LR92_ECTSI4.860e-754.00Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1928contigL-elsbetiae_contig1928:4143..4786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.942432-CDS-L-elsbetiae_contig1928:4142..42221622815799.942432-CDS-L-elsbetiae_contig1928:4142..4222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 4143..4222 +
1691683110.5971587-CDS-L-elsbetiae_contig1928:4142..42221691683110.5971587-CDS-L-elsbetiae_contig1928:4142..4222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 4143..4222 +
1622815799.954619-CDS-L-elsbetiae_contig1928:4710..47861622815799.954619-CDS-L-elsbetiae_contig1928:4710..4786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 4711..4786 +
1691683110.6059406-CDS-L-elsbetiae_contig1928:4710..47861691683110.6059406-CDS-L-elsbetiae_contig1928:4710..4786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 4711..4786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1928.5705.1prot_L-elsbetiae_contig1928.5705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1928 4143..4786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1928.5705.1

>prot_L-elsbetiae_contig1928.5705.1 ID=prot_L-elsbetiae_contig1928.5705.1|Name=mRNA_L-elsbetiae_contig1928.5705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
LCDLTDDDVEDLATCLDDAGREAIGKLYLEENALTTLPEGLLAGLTGLTA
L*
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mRNA from alignment at L-elsbetiae_contig1928:4143..4786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1928.5705.1 ID=mRNA_L-elsbetiae_contig1928.5705.1|Name=mRNA_L-elsbetiae_contig1928.5705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=644bp|location=Sequence derived from alignment at L-elsbetiae_contig1928:4143..4786+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGCGATTTAACCGATGACGATGTCGAGGATCTGGCGACATGCTTGGA
CGATGCAGGACGAGAAGCTATTGGAAAACTGTATGTGTGCAGTTGCCCCA
TTGTTGATGTGTGGGTGCATGTTCTGAGTTTAGTGGTTTTTAGCACAAGA
TTTGACGTGCCCTTTAGCGTCTGCGTTACTGAACTCAGCTCAACCACCGC
TTTGACAGGACCCATGTAGATATCTTTCATCTTCGCATAATTGCCCATGA
ACCCTCAAACTCTGTGAAATACGTTCGCGAGATTGCTCATGACATGTCGG
TTCCGACCGCAGTGAACTACTTCAATGGCGTGACGAAAGTACGACATTCT
CCGGCCTAAGCTGCTTCATGGTGCGAACGAATGATTGATTTGCATTGGGA
ACCGGGCCCAGCTGGTCACCCGGCGGGGTACTGTCCGTGACCTTGCCGGT
TCACTCCATTACCATGGGCTCGCAACGTCTTGTGGATCACCATGTGCGGC
GGCAGGAAGAGATTATCCGCCAACTTGTCGTGTCTGCTCCGCTCATCGCC
TTCTCTCGACACCCATAGGTATTTAGAAGAGAACGCCCTTACCACCCTGC
CGGAGGGGCTATTGGCGGGCCTCACGGGCCTCACAGCTCTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1928:4143..4786+

>mRNA_L-elsbetiae_contig1928.5705.1 ID=mRNA_L-elsbetiae_contig1928.5705.1|Name=mRNA_L-elsbetiae_contig1928.5705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig1928:4143..4786+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGCGATTTAACCGATGACGATGTCGAGGATCTGGCGACATGCTTGGA
CGATGCAGGACGAGAAGCTATTGGAAAACTCTCTGCGATTTAACCGATGA
CGATGTCGAGGATCTGGCGACATGCTTGGACGATGCAGGACGAGAAGCTA
TTGGAAAACTGTATTTAGAAGAGAACGCCCTTACCACCCTGCCGGAGGGG
CTATTGGCGGGCCTCACGGGCCTCACAGCTCTGTAAGTATTTAGAAGAGA
ACGCCCTTACCACCCTGCCGGAGGGGCTATTGGCGGGCCTCACGGGCCTC
ACAGCTCTGTAA
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