mRNA_L-elsbetiae_contig1926.5702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1926.5702.1
Unique NamemRNA_L-elsbetiae_contig1926.5702.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1926.5702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1926contigL-elsbetiae_contig1926:20927..22576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size933
Cds size930
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1926.5702.1prot_L-elsbetiae_contig1926.5702.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1926 20929..22576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.596679-CDS-L-elsbetiae_contig1926:20928..211061622815799.596679-CDS-L-elsbetiae_contig1926:20928..21106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 20929..21106 -
1691683110.4474747-CDS-L-elsbetiae_contig1926:20928..211061691683110.4474747-CDS-L-elsbetiae_contig1926:20928..21106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 20929..21106 -
1622815799.6112025-CDS-L-elsbetiae_contig1926:21422..216701622815799.6112025-CDS-L-elsbetiae_contig1926:21422..21670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 21423..21670 -
1691683110.4575484-CDS-L-elsbetiae_contig1926:21422..216701691683110.4575484-CDS-L-elsbetiae_contig1926:21422..21670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 21423..21670 -
1622815799.6240835-CDS-L-elsbetiae_contig1926:22072..225761622815799.6240835-CDS-L-elsbetiae_contig1926:22072..22576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 22073..22576 -
1691683110.4673486-CDS-L-elsbetiae_contig1926:22072..225761691683110.4673486-CDS-L-elsbetiae_contig1926:22072..22576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1926 22073..22576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1926.5702.1

>prot_L-elsbetiae_contig1926.5702.1 ID=prot_L-elsbetiae_contig1926.5702.1|Name=mRNA_L-elsbetiae_contig1926.5702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=310bp
ENLCSSFFDSAGTPRSGGTSTWEPGSSSKSGTIAVMAGADEIQEAKEEPI
KAKPSDVDVGQILGLVSPDPQELPTRTICWGGQESFTRTEEPSRFFPDDA
CNDSSSIGAGDDGGNEQSGSMLELDRSDTDSDDGVDEFINCEDGSVEGIM
AALNRESTTLERSGDTVQVQEVAAAAIDESKKQEDMLPAEERVTVPEAVV
ESDTRAGVIEKAPRWTIGQKMAVIVVALATFVLGAITIGVVVHGYRASIF
RNSSTAVTVYVQPTARNAAGLDRVTDEPALGSQARHVGRTAAASATAVIG
PLTSHRSLSS
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mRNA from alignment at L-elsbetiae_contig1926:20927..22576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1926.5702.1 ID=mRNA_L-elsbetiae_contig1926.5702.1|Name=mRNA_L-elsbetiae_contig1926.5702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig1926:20927..22576- (Laminarionema elsbetiae ELsaHSoW15)
GAGAACTTGTGCTCGAGCTTTTTCGATAGTGCCGGGACCCCTAGGTCGGG
AGGAACGTCGACGTGGGAGCCGGGGTCTAGCTCGAAGTCGGGCACGATTG
CCGTGATGGCGGGGGCCGACGAGATACAAGAGGCGAAGGAAGAGCCCATC
AAGGCGAAGCCCTCGGACGTCGACGTGGGCCAGATTCTAGGTTTAGTAAG
CCCCGATCCACAGGAGTTGCCCACCCGCACGATCTGCTGGGGTGGCCAAG
AGAGCTTCACCAGGACTGAGGAGCCTTCGAGGTTTTTCCCCGACGATGCG
TGCAATGATTCGAGTTCCATAGGTGCAGGGGACGATGGCGGTAACGAGCA
ATCAGGGTCCATGCTGGAACTCGATCGTAGCGACACCGACTCTGATGACG
GGGTTGACGAGTTCATCAACTGCGAAGACGGTAGCGTTGAAGGAATCATG
GCTGCTCTCAACAGAGAGAGTACCACGCTGGAGCGTTCTGGCGACACGGT
GCAGGTATCTCTTTCAGTCTGTGGTTGTTGCGGGTTGTGGAGGTATTTTT
CAAGCGCAGGGACTCATTTGGTATAACAATTCTCCTATGTAAAACAAAAT
GACAGCTAGCTGTGGCCTTACGCTGCCGTGTCCCTCGAGCAAGTTTCATT
CAAAAGCAGAAAGTTCGATCGGCGCTCGTTATTCCTCCCCACAACATGCT
ATAAAGAGGACGTCCCTTGAGTGTGTGGTTTCTTTAGATATGCCAACCAC
GCGTAGTACTGTCGGTTAACAGGCGATCGCCAACTGGAAAGCCACCCGAG
GGCGATGAAAGCCTTCGACCTTTCTCATGAACGCGCTTGTAGATATATCA
ACATCCAAACATTGCCCAACATTCGCTCCGTGGGTCTGTTGTTGCATGAT
ACGCAGGTGCAAGAAGTCGCCGCAGCTGCGATCGACGAGAGCAAGAAGCA
AGAAGACATGCTTCCCGCTGAGGAACGCGTGACCGTACCCGAAGCCGTTG
TTGAATCGGACACGAGAGCGGGGGTTATCGAAAAGGCGCCTCGGTGGACC
ATCGGCCAGAAGATGGCAGTCATCGTTGTGGCCCTGGCGACATTTGTGCT
TGGAGCAATCACCATCGGTGTTGTTGTGCACGGATACAGAGCCTCTATTT
TTAGGTACGTACGAAATTGTAGAATGTCTGTGATACGCGAGACCACTACA
TGGAGTCGAGTGCATACCAATGAGCTCAATGAAGTTGACGGTGAGGCACA
TGTGTTTCTTCATGTATGTCCAGCAAAGGTCACTCTTGATAGGCCAGCCA
GCGAAGGTGGACCACCGTCGCTACGGTGCCTCGCTGGCATATGCAATTTG
TGCGATGCGTTGTGGTTGGAGCTCAGGCTGCTCTGTAGCTACAATAACAG
TTTGGAAGGATGCTGTTAGCTGACTTGACGACCGTCCTGCTGCGCAACCT
ATTTATTTCGCCATCGGCAGGAACTCTTCTACAGCGGTGACAGTTTACGT
CCAACCCACGGCCAGAAACGCGGCTGGGCTCGACCGTGTGACCGACGAAC
CCGCTTTGGGCTCGCAGGCCCGCCACGTGGGTCGAACGGCTGCCGCGTCA
GCAACAGCAGTGATTGGTCCGCTCACTTCGCACCGTTCTCTGTCCAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1926:20927..22576-

>mRNA_L-elsbetiae_contig1926.5702.1 ID=mRNA_L-elsbetiae_contig1926.5702.1|Name=mRNA_L-elsbetiae_contig1926.5702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1860bp|location=Sequence derived from alignment at L-elsbetiae_contig1926:20927..22576- (Laminarionema elsbetiae ELsaHSoW15)
GAGAACTTGTGCTCGAGCTTTTTCGATAGTGCCGGGACCCCTAGGTCGGG
AGGAACGTCGACGTGGGAGCCGGGGTCTAGCTCGAAGTCGGGCACGATTG
CCGTGATGGCGGGGGCCGACGAGATACAAGAGGCGAAGGAAGAGCCCATC
AAGGCGAAGCCCTCGGACGTCGACGTGGGCCAGATTCTAGGTTTAGTAAG
CCCCGATCCACAGGAGTTGCCCACCCGCACGATCTGCTGGGGTGGCCAAG
AGAGCTTCACCAGGACTGAGGAGCCTTCGAGGTTTTTCCCCGACGATGCG
TGCAATGATTCGAGTTCCATAGGTGCAGGGGACGATGGCGGTAACGAGCA
ATCAGGGTCCATGCTGGAACTCGATCGTAGCGACACCGACTCTGATGACG
GGGTTGACGAGTTCATCAACTGCGAAGACGGTAGCGTTGAAGGAATCATG
GCTGCTCTCAACAGAGAGAGTACCACGCTGGAGCGTTCTGGCGACACGGT
GCAGGAGAACTTGTGCTCGAGCTTTTTCGATAGTGCCGGGACCCCTAGGT
CGGGAGGAACGTCGACGTGGGAGCCGGGGTCTAGCTCGAAGTCGGGCACG
ATTGCCGTGATGGCGGGGGCCGACGAGATACAAGAGGCGAAGGAAGAGCC
CATCAAGGCGAAGCCCTCGGACGTCGACGTGGGCCAGATTCTAGGTTTAG
TAAGCCCCGATCCACAGGAGTTGCCCACCCGCACGATCTGCTGGGGTGGC
CAAGAGAGCTTCACCAGGACTGAGGAGCCTTCGAGGTTTTTCCCCGACGA
TGCGTGCAATGATTCGAGTTCCATAGGTGCAGGGGACGATGGCGGTAACG
AGCAATCAGGGTCCATGCTGGAACTCGATCGTAGCGACACCGACTCTGAT
GACGGGGTTGACGAGTTCATCAACTGCGAAGACGGTAGCGTTGAAGGAAT
CATGGCTGCTCTCAACAGAGAGAGTACCACGCTGGAGCGTTCTGGCGACA
CGGTGCAGGTGCAAGAAGTCGCCGCAGCTGCGATCGACGAGAGCAAGAAG
CAAGAAGACATGCTTCCCGCTGAGGAACGCGTGACCGTACCCGAAGCCGT
TGTTGAATCGGACACGAGAGCGGGGGTTATCGAAAAGGCGCCTCGGTGGA
CCATCGGCCAGAAGATGGCAGTCATCGTTGTGGCCCTGGCGACATTTGTG
CTTGGAGCAATCACCATCGGTGTTGTTGTGCACGGATACAGAGCCTCTAT
TTTTAGGTGCAAGAAGTCGCCGCAGCTGCGATCGACGAGAGCAAGAAGCA
AGAAGACATGCTTCCCGCTGAGGAACGCGTGACCGTACCCGAAGCCGTTG
TTGAATCGGACACGAGAGCGGGGGTTATCGAAAAGGCGCCTCGGTGGACC
ATCGGCCAGAAGATGGCAGTCATCGTTGTGGCCCTGGCGACATTTGTGCT
TGGAGCAATCACCATCGGTGTTGTTGTGCACGGATACAGAGCCTCTATTT
TTAGGAACTCTTCTACAGCGGTGACAGTTTACGTCCAACCCACGGCCAGA
AACGCGGCTGGGCTCGACCGTGTGACCGACGAACCCGCTTTGGGCTCGCA
GGCCCGCCACGTGGGTCGAACGGCTGCCGCGTCAGCAACAGCAGTGATTG
GTCCGCTCACTTCGCACCGTTCTCTGTCCAGCGAACTCTTCTACAGCGGT
GACAGTTTACGTCCAACCCACGGCCAGAAACGCGGCTGGGCTCGACCGTG
TGACCGACGAACCCGCTTTGGGCTCGCAGGCCCGCCACGTGGGTCGAACG
GCTGCCGCGTCAGCAACAGCAGTGATTGGTCCGCTCACTTCGCACCGTTC
TCTGTCCAGC
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