mRNA_L-elsbetiae_contig19247.5694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19247.5694.1
Unique NamemRNA_L-elsbetiae_contig19247.5694.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19247.5694.1 vs. uniprot
Match: A0A6H5KG45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG45_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.720e-26
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAESYRHEYAPLSCNIWFLPRPRLVEV 171
            +EVDVVFEEDVGFLGALRDLRR AKCPV+LTAE+YR EYAPLSCNIW LPRPRL EV
Sbjct:   17 EEVDVVFEEDVGFLGALRDLRRAAKCPVILTAETYRREYAPLSCNIWHLPRPRLAEV 73
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BLAST of mRNA_L-elsbetiae_contig19247.5694.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.380e-26
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAESYRHEYAPLSCNIWFLPRPRLVEV 171
            +EVDVVFEEDVGFLGALRDLRR AKCPV+LTAE+YR EYAPLSCNIW LPRPRL E+
Sbjct: 1025 EEVDVVFEEDVGFLGALRDLRRAAKCPVILTAETYRREYAPLSCNIWHLPRPRLAEL 1081
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19247.5694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG45_9PHAE1.720e-2687.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI4.380e-2685.96Similar to chromosome fragility associated gene 1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19247contigL-elsbetiae_contig19247:1281..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue6.2e-22
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-13_004570.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.2434332-CDS-L-elsbetiae_contig19247:1280..14661622815799.2434332-CDS-L-elsbetiae_contig19247:1280..1466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19247 1281..1466 -
1691683110.2715359-CDS-L-elsbetiae_contig19247:1280..14661691683110.2715359-CDS-L-elsbetiae_contig19247:1280..1466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19247 1281..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19247.5694.1prot_L-elsbetiae_contig19247.5694.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19247 1281..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19247.5694.1

>prot_L-elsbetiae_contig19247.5694.1 ID=prot_L-elsbetiae_contig19247.5694.1|Name=mRNA_L-elsbetiae_contig19247.5694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAESYRHEYAPLSCNIWFLP
RPRLVEVCANI*
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mRNA from alignment at L-elsbetiae_contig19247:1281..1466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19247.5694.1 ID=mRNA_L-elsbetiae_contig19247.5694.1|Name=mRNA_L-elsbetiae_contig19247.5694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig19247:1281..1466- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGTGGACGTGGTGTTCGAGGAGGACGTGGGGTTCCTGGGGGCCCT
GAGGGATCTCCGGAGAGGGGCCAAGTGTCCCGTGGTACTGACCGCCGAGT
CGTACAGGCACGAGTACGCCCCGCTGTCGTGCAACATCTGGTTCCTCCCG
CGCCCGAGGCTTGTGGAGGTATGTGCAAATATCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19247:1281..1466-

>mRNA_L-elsbetiae_contig19247.5694.1 ID=mRNA_L-elsbetiae_contig19247.5694.1|Name=mRNA_L-elsbetiae_contig19247.5694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig19247:1281..1466- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGTGGACGTGGTGTTCGAGGAGGACGTGGGGTTCCTGGGGGCCCT
GAGGGATCTCCGGAGAGGGGCCAAGTGTCCCGTGGTACTGACCGCCGAGT
CGTACAGGCACGAGTACGCCCCGCTGTCGTGCAACATCTGGTTCCTCCCG
CGCCCGAGGCTTGTGGAGGTATGTGCAAATATCTGACAGGAAGTGGACGT
GGTGTTCGAGGAGGACGTGGGGTTCCTGGGGGCCCTGAGGGATCTCCGGA
GAGGGGCCAAGTGTCCCGTGGTACTGACCGCCGAGTCGTACAGGCACGAG
TACGCCCCGCTGTCGTGCAACATCTGGTTCCTCCCGCGCCCGAGGCTTGT
GGAGGTATGTGCAAATATCTGA
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