mRNA_L-elsbetiae_contig1923.5686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1923.5686.1
Unique NamemRNA_L-elsbetiae_contig1923.5686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1923.5686.1 vs. uniprot
Match: D7G7Z4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.890e-23
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   58 MVPGAGGVRSGKRKAENQRHDSASKKAMEAYYRQAMLGGNDGVARGGGRS--GDNSAEEATDDESEFSSVDGRISPSR-PRGWGAA 306
            MVPGAG  R GKRKAE++R+ SASKKAMEAYY  A   G+ GVA GGGRS  GDNS EEATDDESEFSSVDGR SPS+ P  WG A
Sbjct:    1 MVPGAGVSRHGKRKAEHERNASASKKAMEAYYGHA---GHAGVAAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPSQQPGAWGVA 83
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BLAST of mRNA_L-elsbetiae_contig1923.5686.1 vs. uniprot
Match: A0A6H5L4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.240e-22
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   58 MVPGAGGVRSGKRKAENQRHDSASKKAMEAYYRQAMLGGNDGVARGGGRS--GDNSAEEATDDESEFSSVDGRISPSRPRG-WGAA 306
            MVPGAG VR GKRKAE++R+ SASKK MEAYY  A   G+ GV  GGGRS  GDNS EEATDDESEFSSVDGR SP++  G WGAA
Sbjct:    1 MVPGAGVVRHGKRKAEHERNASASKKVMEAYYGHA---GHAGVVAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPAQQPGTWGAA 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1923.5686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z4_ECTSI1.890e-2372.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I8_9PHAE4.240e-2270.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1923contigL-elsbetiae_contig1923:10089..11097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009550.1
Exons2
Model size520
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.5946612-CDS-L-elsbetiae_contig1923:10088..105501622815798.5946612-CDS-L-elsbetiae_contig1923:10088..10550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 10089..10550 -
1691683109.9267647-CDS-L-elsbetiae_contig1923:10088..105501691683109.9267647-CDS-L-elsbetiae_contig1923:10088..10550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 10089..10550 -
1622815798.6055624-CDS-L-elsbetiae_contig1923:11040..110971622815798.6055624-CDS-L-elsbetiae_contig1923:11040..11097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 11041..11097 -
1691683109.9358757-CDS-L-elsbetiae_contig1923:11040..110971691683109.9358757-CDS-L-elsbetiae_contig1923:11040..11097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 11041..11097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1923.5686.1prot_L-elsbetiae_contig1923.5686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1923 10089..11097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1923.5686.1

>prot_L-elsbetiae_contig1923.5686.1 ID=prot_L-elsbetiae_contig1923.5686.1|Name=mRNA_L-elsbetiae_contig1923.5686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
EAPGTTKTCSRSLLLFKSTMVPGAGGVRSGKRKAENQRHDSASKKAMEAY
YRQAMLGGNDGVARGGGRSGDNSAEEATDDESEFSSVDGRISPSRPRGWG
AAAAAAAQAGGGGHVVGPHGFAVAPGVAFTTPGGYAQHQMHQIGMDSDRG
GSTGASSRWSAYDTPVGHQHYQQ
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mRNA from alignment at L-elsbetiae_contig1923:10089..11097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1923.5686.1 ID=mRNA_L-elsbetiae_contig1923.5686.1|Name=mRNA_L-elsbetiae_contig1923.5686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1009bp|location=Sequence derived from alignment at L-elsbetiae_contig1923:10089..11097- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCTCCTGGCACTACCAAGACCTGCTCTCGGTCACTACTGCTGTTTAA
AAGCACGGTGAGACCAAACCACTTTTGTTCCGATTTCCGCCTGTAGAAAG
AAAAAATAACCGGTGCGTTGTCGCCAGTCGACGGAGCGAGTAGGAGAGAG
CTGTACGGGCTGCCTCTCTACCGTGTCCTCAAAACGAGACTGGTGGCTGT
GTCGGTGCGCTCTATTTTCTGTCTTTGACCCGTTTTCTTGGAGGGAATAC
CGTGAAACGCCCCCGATCATTTTCCCCACCGGCGAGAAAAACCCTTGTTC
CACCTCTCGGTGTTCGGTGTTTATTTTGAGATGACTGCATCCCCGGCGCG
GCGGTAGATAGCTGATTTTCGGTGAGGGCCTACATAGCGATCTAGTCGTG
TATGGCGAGAGCTCATCCAGTCTTCGTTTTCCTGTCTTCTGTCGTCGTCG
TGGGCAGCTTTGTGTTTTCGCGCATTTTCCTCTGTTCTCGATAGGAGACA
ATTAATCGGTCCGGGTCGTTATTTCGTTATTTCCTTGCTTCTCGAAGATG
GTGCCTGGGGCTGGTGGTGTGCGCAGTGGAAAGCGCAAGGCAGAGAATCA
GCGCCACGACAGCGCCTCCAAGAAGGCGATGGAAGCTTACTACCGCCAGG
CGATGCTGGGCGGGAACGACGGCGTAGCTCGGGGCGGCGGGCGCTCCGGC
GACAACAGCGCGGAAGAGGCAACGGACGACGAGAGTGAATTTTCCTCGGT
CGACGGCCGAATATCCCCCTCGCGGCCCAGGGGCTGGGGAGCAGCAGCAG
CGGCGGCAGCGCAAGCTGGAGGAGGAGGGCACGTGGTGGGGCCACACGGC
TTCGCGGTCGCGCCTGGAGTCGCTTTCACCACGCCCGGCGGATACGCACA
GCACCAGATGCACCAGATTGGCATGGATTCCGACAGAGGTGGGTCTACCG
GAGCCAGTAGTAGGTGGTCTGCGTACGATACCCCCGTAGGGCACCAGCAC
TATCAACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1923:10089..11097-

>mRNA_L-elsbetiae_contig1923.5686.1 ID=mRNA_L-elsbetiae_contig1923.5686.1|Name=mRNA_L-elsbetiae_contig1923.5686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1923:10089..11097- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCTCCTGGCACTACCAAGACCTGCTCTCGGTCACTACTGCTGTTTAA
AAGCACGGAAGCTCCTGGCACTACCAAGACCTGCTCTCGGTCACTACTGC
TGTTTAAAAGCACGATGGTGCCTGGGGCTGGTGGTGTGCGCAGTGGAAAG
CGCAAGGCAGAGAATCAGCGCCACGACAGCGCCTCCAAGAAGGCGATGGA
AGCTTACTACCGCCAGGCGATGCTGGGCGGGAACGACGGCGTAGCTCGGG
GCGGCGGGCGCTCCGGCGACAACAGCGCGGAAGAGGCAACGGACGACGAG
AGTGAATTTTCCTCGGTCGACGGCCGAATATCCCCCTCGCGGCCCAGGGG
CTGGGGAGCAGCAGCAGCGGCGGCAGCGCAAGCTGGAGGAGGAGGGCACG
TGGTGGGGCCACACGGCTTCGCGGTCGCGCCTGGAGTCGCTTTCACCACG
CCCGGCGGATACGCACAGCACCAGATGCACCAGATTGGCATGGATTCCGA
CAGAGGTGGGTCTACCGGAGCCAGTAGTAGGTGGTCTGCGTACGATACCC
CCGTAGGGCACCAGCACTATCAACAAATGGTGCCTGGGGCTGGTGGTGTG
CGCAGTGGAAAGCGCAAGGCAGAGAATCAGCGCCACGACAGCGCCTCCAA
GAAGGCGATGGAAGCTTACTACCGCCAGGCGATGCTGGGCGGGAACGACG
GCGTAGCTCGGGGCGGCGGGCGCTCCGGCGACAACAGCGCGGAAGAGGCA
ACGGACGACGAGAGTGAATTTTCCTCGGTCGACGGCCGAATATCCCCCTC
GCGGCCCAGGGGCTGGGGAGCAGCAGCAGCGGCGGCAGCGCAAGCTGGAG
GAGGAGGGCACGTGGTGGGGCCACACGGCTTCGCGGTCGCGCCTGGAGTC
GCTTTCACCACGCCCGGCGGATACGCACAGCACCAGATGCACCAGATTGG
CATGGATTCCGACAGAGGTGGGTCTACCGGAGCCAGTAGTAGGTGGTCTG
CGTACGATACCCCCGTAGGGCACCAGCACTATCAACAA
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