mRNA_L-elsbetiae_contig19229.5685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19229.5685.1
Unique NamemRNA_L-elsbetiae_contig19229.5685.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19229.5685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19229contigL-elsbetiae_contig19229:375..2664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1767
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19229.5685.1prot_L-elsbetiae_contig19229.5685.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19229 932..2474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.5224183-UTR-L-elsbetiae_contig19229:374..9311622815798.5224183-UTR-L-elsbetiae_contig19229:374..931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19229 375..931 -
1691683109.8730242-UTR-L-elsbetiae_contig19229:374..9311691683109.8730242-UTR-L-elsbetiae_contig19229:374..931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19229 375..931 -
1622815798.5558362-UTR-L-elsbetiae_contig19229:2474..26641622815798.5558362-UTR-L-elsbetiae_contig19229:2474..2664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19229 2475..2664 -
1691683109.9151378-UTR-L-elsbetiae_contig19229:2474..26641691683109.9151378-UTR-L-elsbetiae_contig19229:2474..2664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19229 2475..2664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.5344896-CDS-L-elsbetiae_contig19229:931..9351622815798.5344896-CDS-L-elsbetiae_contig19229:931..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19229 932..935 -
1691683109.892181-CDS-L-elsbetiae_contig19229:931..9351691683109.892181-CDS-L-elsbetiae_contig19229:931..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19229 932..935 -
1622815798.5455644-CDS-L-elsbetiae_contig19229:1458..24741622815798.5455644-CDS-L-elsbetiae_contig19229:1458..2474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19229 1459..2474 -
1691683109.9043937-CDS-L-elsbetiae_contig19229:1458..24741691683109.9043937-CDS-L-elsbetiae_contig19229:1458..2474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19229 1459..2474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19229.5685.1

>prot_L-elsbetiae_contig19229.5685.1 ID=prot_L-elsbetiae_contig19229.5685.1|Name=mRNA_L-elsbetiae_contig19229.5685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp
MLSLLTPERARHAHSSTGQERCLPAQRARKPGKMPRLCHQAGCTKQRLYG
VGGSGKPEFCSAHKKDGMVNVYSKRCGQQGCAKVSSYGVGGSGKPEFCSA
HKNDGMVDVANKRCGHQGCTKRPSYGVGGSGKPEFCSAHKKEGMMNLKNK
RCVHQGCTKQPSYGVGGSGKPEFCSAHKKDGMVDVANKRCGHQGCTKRPS
YGVDGGGKREFCFAHKKDGMTGVVNRKGCGHQGCTKRPSYGVGGSGKPEF
CSAHKEDGMVNAVSRRKRCGQHVPPTIMGDNKRVRRPPTDLAVAPIPEEA
PQNEITTPSEDDHQQRLWEPDGVKMEPGAFTLGRRGSWR*
back to top

mRNA from alignment at L-elsbetiae_contig19229:375..2664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19229.5685.1 ID=mRNA_L-elsbetiae_contig19229.5685.1|Name=mRNA_L-elsbetiae_contig19229.5685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2290bp|location=Sequence derived from alignment at L-elsbetiae_contig19229:375..2664- (Laminarionema elsbetiae ELsaHSoW15)
ATCCAGGGTACCTACCGCGGGAACCTGTGACCGGTTTAACCGGTACCTGG
TTATTGCCATCACTGAATAAAACTGCGTCGCATTATATGTCAAACCCTGG
TTGATGTCCGCCTCACATTGATTGCCTCAGCCTTGCCTGGCCTGCTCAGG
GGGTGCGCAGGCACGATTTGCGTTCTACATACATACCCTCATGCTTTCCC
TCTTGACCCCTGAGCGTGCGCGGCACGCACACAGCAGCACAGGCCAGGAA
AGATGCCTACCAGCACAGCGGGCGAGAAAGCCAGGAAAGATGCCTAGGTT
GTGCCACCAAGCCGGTTGCACCAAGCAGCGGTTGTATGGCGTGGGCGGTA
GCGGCAAGCCAGAGTTCTGCTCTGCACACAAGAAGGACGGGATGGTGAAC
GTATACAGCAAGAGGTGCGGCCAACAAGGTTGTGCCAAGGTGTCGTCATA
TGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCTGCTCACAAGAATG
ACGGGATGGTGGACGTGGCGAACAAGAGGTGCGGCCATCAAGGTTGCACC
AAGCGCCCGTCATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTC
TGCACACAAGAAGGAAGGGATGATGAACTTGAAGAACAAGAGGTGCGTCC
ATCAGGGTTGCACCAAGCAGCCGTCATATGGCGTGGGCGGTAGCGGCAAG
CCGGAGTTCTGCTCGGCGCACAAGAAGGACGGGATGGTGGACGTGGCGAA
CAAGAGGTGCGGCCATCAGGGTTGCACCAAGCGCCCGTCATATGGCGTGG
ACGGGGGTGGCAAGCGGGAGTTCTGCTTTGCACACAAGAAGGACGGGATG
ACGGGCGTCGTCAACAGGAAGGGTTGCGGCCATCAAGGTTGCACCAAGCG
CCCGTCATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCTGCAC
ATAAGGAAGACGGCATGGTGAATGCCGTCAGCAGGAGGAAGAGGTGCGGC
CAACACGTTCCTCCAACGATTATGGGGGACAACAAGAGGGTCCGCCGGCC
CCCTACCGACTTGGCTGTGGCTCCAATTCCAGAAGAAGCACCGCAAAATG
AAATCACCACCCCATCAGAGGACGACCACCAACAACGACTTTGGGAGCCA
GACGGCGTGAAAATGGAACCGGGGGCATTTACTCTCGGAAGGCGAGGAAG
CTGGAGGTGAATAAAAAAATTAGAGAGTATGCAACCATACTTGGTGCTGC
CGTAGTCTTCTGACCCTTCTTACAGCAATCGTGAGGTATTTTGCATCCAC
CTGTTGTCCCTGTATTAGGACTGGCGATGGTAGGGAAACGTGTTTGTAGA
TTTTTGCTTGCACATAGTGTGAGCACCGTTAATAATAGTCTATAGCGCTG
TCACTTCGCACGGGAACATAGGTTCGAGAGCTCTTTCAGCGGAAGGACGA
GCGTGCTGCGCTCGATAGGCACGCCAAGTGGAAAACTGCTTCCCCGCGCC
GAGTTGCACCCATCCTCCCCGCAATCGAAGACTGATGCATGTTTCCTGGT
CATGCTACATAGTATATCCATGTAAACCAGCAGCAGGTTTAGTATCGTCT
CGTCTTCACATCAGGAGTTGCATGCATACTCTCCCCCCAATGCTGCTCCT
GCTATCCGATAGCTACCGACGTCATTCCGAACCTTTTCAAAATCCCTCGT
TTTTTTGCGATTACCTTTCTTTCCACCAGGTAGTCTGCATCGCGGGCAAA
TAAATCGGATAGCTGCCTGCAGAAGAACGGAAATGCAGCTTCGATAAACG
ATGTTCGATAGTTGACGGCAGTAGCTGTCCTACGGTCGCCGGCATTCACT
CCGTTTGCGCTACCGCTGGGAACTACATGTCGCGAACGCATTACTTACCT
GTGGTGCAATCAGCAGCATAGTTCTCAATCAAGCTCTAGAGCTTGAGCTC
TCCACACGGACTTAAAAAAAGCGTTTCTGCCTGCCTGCCTGGCCAAAAAA
ACCCAGAGATGTACATATCCGGGGTTCGAGCAGGGTACTGACCGGATATA
TCCGCTGTGACCGGGGACCAAAAATCCCCGTCCCCGGGGTGGTATACAAC
GTATACTTCAGATATTTTGGCCGTTCGGAAGAAGCTCGCTGTCTACTCAC
GGTGATGTGTAGTGTGTACTGCGTGCTTGCTGTCACTGCTGATGCTGCTG
CAGCCTGTCTATCGTTGCATTGGCAATGTTGCTGCAATGTTACAACGCGA
CCTTGTGATGCGACAATTTATTTTTTTAACCCTTTTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19229:375..2664-

>mRNA_L-elsbetiae_contig19229.5685.1 ID=mRNA_L-elsbetiae_contig19229.5685.1|Name=mRNA_L-elsbetiae_contig19229.5685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig19229:375..2664- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTCCCTCTTGACCCCTGAGCGTGCGCGGCACGCACACAGCAGCAC
AGGCCAGGAAAGATGCCTACCAGCACAGCGGGCGAGAAAGCCAGGAAAGA
TGCCTAGGTTGTGCCACCAAGCCGGTTGCACCAAGCAGCGGTTGTATGGC
GTGGGCGGTAGCGGCAAGCCAGAGTTCTGCTCTGCACACAAGAAGGACGG
GATGGTGAACGTATACAGCAAGAGGTGCGGCCAACAAGGTTGTGCCAAGG
TGTCGTCATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCTGCT
CACAAGAATGACGGGATGGTGGACGTGGCGAACAAGAGGTGCGGCCATCA
AGGTTGCACCAAGCGCCCGTCATATGGCGTGGGCGGTAGCGGCAAGCCGG
AGTTCTGCTCTGCACACAAGAAGGAAGGGATGATGAACTTGAAGAACAAG
AGGTGCGTCCATCAGGGTTGCACCAAGCAGCCGTCATATGGCGTGGGCGG
TAGCGGCAAGCCGGAGTTCTGCTCGGCGCACAAGAAGGACGGGATGGTGG
ACGTGGCGAACAAGAGGTGCGGCCATCAGGGTTGCACCAAGCGCCCGTCA
TATGGCGTGGACGGGGGTGGCAAGCGGGAGTTCTGCTTTGCACACAAGAA
GGACGGGATGACGGGCGTCGTCAACAGGAAGGGTTGCGGCCATCAAGGTT
GCACCAAGCGCCCGTCATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTC
TGCTCTGCACATAAGGAAGACGGCATGGTGAATGCCGTCAGCAGGAGGAA
GAGGTGCGGCCAACACGTTCCTCCAACGATTATGGGGGACAACAAGAGGG
TCCGCCGGCCCCCTACCGACTTGGCTGTGGCTCCAATTCCAGAAGAAGCA
CCGCAAAATGAAATCACCACCCCATCAGAGGACGACCACCAACAACGACT
TTGGGAGCCAGACGGCGTGAAAATGGAACCGGGGGCATTTACTCTCGGAA
GGCGAGGAAGCTGGAGATGCTTTCCCTCTTGACCCCTGAGCGTGCGCGGC
ACGCACACAGCAGCACAGGCCAGGAAAGATGCCTACCAGCACAGCGGGCG
AGAAAGCCAGGAAAGATGCCTAGGTTGTGCCACCAAGCCGGTTGCACCAA
GCAGCGGTTGTATGGCGTGGGCGGTAGCGGCAAGCCAGAGTTCTGCTCTG
CACACAAGAAGGACGGGATGGTGAACGTATACAGCAAGAGGTGCGGCCAA
CAAGGTTGTGCCAAGGTGTCGTCATATGGCGTGGGCGGTAGCGGCAAGCC
GGAGTTCTGCTCTGCTCACAAGAATGACGGGATGGTGGACGTGGCGAACA
AGAGGTGCGGCCATCAAGGTTGCACCAAGCGCCCGTCATATGGCGTGGGC
GGTAGCGGCAAGCCGGAGTTCTGCTCTGCACACAAGAAGGAAGGGATGAT
GAACTTGAAGAACAAGAGGTGCGTCCATCAGGGTTGCACCAAGCAGCCGT
CATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCGGCGCACAAG
AAGGACGGGATGGTGGACGTGGCGAACAAGAGGTGCGGCCATCAGGGTTG
CACCAAGCGCCCGTCATATGGCGTGGACGGGGGTGGCAAGCGGGAGTTCT
GCTTTGCACACAAGAAGGACGGGATGACGGGCGTCGTCAACAGGAAGGGT
TGCGGCCATCAAGGTTGCACCAAGCGCCCGTCATATGGCGTGGGCGGTAG
CGGCAAGCCGGAGTTCTGCTCTGCACATAAGGAAGACGGCATGGTGAATG
CCGTCAGCAGGAGGAAGAGGTGCGGCCAACACGTTCCTCCAACGATTATG
GGGGACAACAAGAGGGTCCGCCGGCCCCCTACCGACTTGGCTGTGGCTCC
AATTCCAGAAGAAGCACCGCAAAATGAAATCACCACCCCATCAGAGGACG
ACCACCAACAACGACTTTGGGAGCCAGACGGCGTGAAAATGGAACCGGGG
GCATTTACTCTCGGAAGGCGAGGAAGCTGGAGGTAGGTAG
back to top