mRNA_L-elsbetiae_contig19213.5682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19213.5682.1
Unique NamemRNA_L-elsbetiae_contig19213.5682.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.570e-30
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 2
Query:  110 CYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHEVREFGRVVAMP 298
            CYICCERRADAV+MECGHGGVCF CAT LAD+PPHLCPVCR  IQE+ KLHE+REFGRVV +P
Sbjct:  781 CYICCERRADAVMMECGHGGVCFTCATTLADSPPHLCPVCRKVIQEVFKLHEIREFGRVVVVP 843          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7S0I1C8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I1C8_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 4.240e-14
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 2
Query:   83 DGVEGPRAVCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHEVREFGRV 286
            D  +G    C+ICC    DAV+MECGHGG+C  CATQ A   P LCP+CR  I  ++K+    E G V
Sbjct:   37 DSDDGEEPTCWICCSGPCDAVLMECGHGGICMDCATQCAKKRPPLCPLCRARILVVVKVGAPDEAGIV 104          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.520e-14
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   98 PRAVCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHEVREFG 280
            P  +CY+CC  R +AV+MECGHGG+CF C   LA   P  CP+CR PI  +L++ E RE G
Sbjct:  536 PSHLCYVCCVSRKNAVIMECGHGGICFECGKSLASRHPRNCPICRAPISAVLRV-ERREPG 595          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: R1BX35_EMIHU (RING-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX35_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 3.330e-12
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:   83 DGVEGPRAV---CYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHEVREFGRVVAMP 298
            DG + P AV   C+IC E   DAV++ECGHGG+C ACA ++      LCP+CR P+ ++++L      G  + MP
Sbjct:   24 DGSDTPDAVEDRCWICYEGPRDAVLLECGHGGICVACARRVFKKRGRLCPMCRQPVSQMVQLQLGDGHGSELEMP 98          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.820e-12
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2
Query:  107 VCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKL 259
            +CYIC     DAV+MECGH GVCF+CA +LA   P  CP+CR PI  +LKL
Sbjct:  429 LCYICYVAPRDAVLMECGHAGVCFSCAQKLAVRHPRSCPICRQPISTVLKL 479          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7J7Q9S5_9CHLO (RING-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9S5_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 9.110e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   41 GGMSSAAASSVGAGDGVEGP-----RAVCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHE 265
            GGM+SAAA++  A   +  P       +C IC + +A  V MECGHGG C+ CA  L   PP  CPVCR PIQ++++L +
Sbjct:  505 GGMASAAAAAGTAAARIASPCGDVDDGLCTICYDSQASCVFMECGHGGYCWRCAHVLFARPPSECPVCRQPIQQVVELED 584          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A699ZH23_HAELA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZH23_HAELA)

HSP 1 Score: 65.9 bits (159), Expect = 3.070e-11
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  107 VCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHEVREFGRV 286
            +C IC ++ +  V ++CGHGG C ACA ++   PP+ CP CR  I+++++L EVR  G+V
Sbjct:  109 LCVICYDKPSSCVFLDCGHGGFCKACAYRIFVRPPNECPTCRQHIEQVVELEEVRPTGQV 168          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A383WG86_TETOB (RING-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WG86_TETOB)

HSP 1 Score: 65.5 bits (158), Expect = 2.800e-10
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 2
Query:  107 VCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKLHE 265
            +C IC +  A  V MECGHGG C+ CA  L   PP  CPVCR PIQ++++L +
Sbjct:  533 LCTICYDNHASCVFMECGHGGYCWRCAHLLFARPPSECPVCRQPIQQVVELED 585          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7S4F120_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F120_CHRCT)

HSP 1 Score: 65.1 bits (157), Expect = 2.940e-10
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  110 CYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKL 259
            C+ICC   ADAV+++CGHGG+C+ACA +     PH+CP+CR  I+ + ++
Sbjct:  245 CWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVVARV 294          
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Match: A0A7S3EPQ4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EPQ4_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-10
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:   80 GDGVEGPRAVCYICCERRADAVVMECGHGGVCFACATQLADTPPHLCPVCRDPIQEILKL 259
            GDG +   ++C IC E + DAV++ECGHGG+C+ACA +        CP+CR P+ +++ +
Sbjct:   24 GDGTD---SLCLICFEGQRDAVLLECGHGGICYACARRCFKKKRRECPMCRQPVTQVVHI 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19213.5682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ86_ECTSI1.570e-3082.54RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0I1C8_9EUKA4.240e-1448.53Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3ZTM6_9STRA8.520e-1452.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1BX35_EMIHU3.330e-1242.67RING-type domain-containing protein n=1 Tax=Emilia... [more]
A0A7S3JUI3_9STRA4.820e-1258.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7J7Q9S5_9CHLO9.110e-1245.00RING-type domain-containing protein n=1 Tax=Scened... [more]
A0A699ZH23_HAELA3.070e-1143.33E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hae... [more]
A0A383WG86_TETOB2.800e-1050.94RING-type domain-containing protein n=1 Tax=Tetrad... [more]
A0A7S4F120_CHRCT2.940e-1048.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3EPQ4_9EUKA3.270e-1041.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19213contigL-elsbetiae_contig19213:1852..2155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.0061908-CDS-L-elsbetiae_contig19213:1851..21541622815798.0061908-CDS-L-elsbetiae_contig19213:1851..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 1852..2154 +
1691683109.5621803-CDS-L-elsbetiae_contig19213:1851..21541691683109.5621803-CDS-L-elsbetiae_contig19213:1851..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 1852..2154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19213.5682.1prot_L-elsbetiae_contig19213.5682.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19213 1852..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19213.5682.1

>prot_L-elsbetiae_contig19213.5682.1 ID=prot_L-elsbetiae_contig19213.5682.1|Name=mRNA_L-elsbetiae_contig19213.5682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
RAARGYAEETELAGGDVVGGGLLGGRRRRGGGAPRRVLHLLRAEGGRGGD
GVRPRRGVLRVRDAAGRHAPPPVSRVPGPHPGDPQAPRGPGVRQSCRHAW
R
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mRNA from alignment at L-elsbetiae_contig19213:1852..2155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19213.5682.1 ID=mRNA_L-elsbetiae_contig19213.5682.1|Name=mRNA_L-elsbetiae_contig19213.5682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=304bp|location=Sequence derived from alignment at L-elsbetiae_contig19213:1852..2155+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCTGCACGGGGGTATGCAGAGGAGACTGAGCTGGCCGGGGGGGATGT CGTCGGCGGCGGCCTCCTCGGTGGGCGCCGGAGACGGGGTGGAGGGGCCC CGCGCCGTGTGCTACATCTGCTGCGAGCGGAGGGCGGACGCGGTGGTGAT GGAGTGCGGCCACGGCGGGGTGTGCTTCGCGTGCGCGACGCAGCTGGCCG ACACGCCCCCCCACCTGTGTCCCGTGTGCCGGGACCCCATCCAGGAGATC CTCAAGCTCCACGAGGTCCGGGAGTTCGGCAGAGTTGTCGCCATGCCTGG CGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19213:1852..2155+

>mRNA_L-elsbetiae_contig19213.5682.1 ID=mRNA_L-elsbetiae_contig19213.5682.1|Name=mRNA_L-elsbetiae_contig19213.5682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig19213:1852..2155+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCTGCACGGGGGTATGCAGAGGAGACTGAGCTGGCCGGGGGGGATGT
CGTCGGCGGCGGCCTCCTCGGTGGGCGCCGGAGACGGGGTGGAGGGGCCC
CGCGCCGTGTGCTACATCTGCTGCGAGCGGAGGGCGGACGCGGTGGTGAT
GGAGTGCGGCCACGGCGGGGTGTGCTTCGCGTGCGCGACGCAGCTGGCCG
ACACGCCCCCCCACCTGTGTCCCGTGTGCCGGGACCCCATCCAGGAGATC
CTCAAGCTCCACGAGGTCCGGGAGTTCGGCAGAGTTGTCGCCATGCCTGG
CGGCGGGCTGCACGGGGGTATGCAGAGGAGACTGAGCTGGCCGGGGGGGA
TGTCGTCGGCGGCGGCCTCCTCGGTGGGCGCCGGAGACGGGGTGGAGGGG
CCCCGCGCCGTGTGCTACATCTGCTGCGAGCGGAGGGCGGACGCGGTGGT
GATGGAGTGCGGCCACGGCGGGGTGTGCTTCGCGTGCGCGACGCAGCTGG
CCGACACGCCCCCCCACCTGTGTCCCGTGTGCCGGGACCCCATCCAGGAG
ATCCTCAAGCTCCACGAGGTCCGGGAGTTCGGCAGAGTTGTCGCCATGCC
TGGCGG
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